HEADER TRANSCRIPTION 22-SEP-18 6HPW TITLE CRYSTAL STRUCTURE OF ENL (MLLT1) IN COMPLEX WITH COMPOUND 20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ENL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: YEATS DOMAIN-CONTAINING PROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MLLT1, ENL, LTG19, YEATS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS YEATS DOMAIN, INHIBITOR COMPLEX, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.HEIDENREICH,A.CHAIKUAD,M.MOUSTAKIM,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,P.E.BRENNAN,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 24-JAN-24 6HPW 1 REMARK REVDAT 3 24-APR-19 6HPW 1 JRNL REVDAT 2 05-DEC-18 6HPW 1 JRNL REVDAT 1 28-NOV-18 6HPW 0 JRNL AUTH D.HEIDENREICH,M.MOUSTAKIM,J.SCHMIDT,D.MERK,P.E.BRENNAN, JRNL AUTH 2 O.FEDOROV,A.CHAIKUAD,S.KNAPP JRNL TITL STRUCTURE-BASED APPROACH TOWARD IDENTIFICATION OF INHIBITORY JRNL TITL 2 FRAGMENTS FOR ELEVEN-NINETEEN-LEUKEMIA PROTEIN (ENL). JRNL REF J.MED.CHEM. V. 61 10929 2018 JRNL REFN ISSN 0022-2623 JRNL PMID 30407816 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01457 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 641 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.51000 REMARK 3 B22 (A**2) : -1.51000 REMARK 3 B33 (A**2) : 3.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.139 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1270 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1182 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1704 ; 1.538 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2740 ; 1.242 ; 1.602 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ; 8.065 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;25.294 ;21.127 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 210 ;12.677 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.981 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 147 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1473 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 285 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 572 ; 1.555 ; 2.126 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 571 ; 1.552 ; 2.120 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 716 ; 2.382 ; 3.179 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 716 ; 2.380 ; 3.183 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 698 ; 2.527 ; 2.586 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 699 ; 2.526 ; 2.590 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 989 ; 3.609 ; 3.689 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1306 ; 7.210 ;25.713 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1306 ; 7.209 ;25.697 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1380 -3.8620 12.7300 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: 0.0123 REMARK 3 T33: 0.2994 T12: -0.0073 REMARK 3 T13: 0.0029 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.7902 L22: 7.4027 REMARK 3 L33: 1.8150 L12: -1.1700 REMARK 3 L13: 0.2686 L23: -1.2013 REMARK 3 S TENSOR REMARK 3 S11: 0.0893 S12: -0.1029 S13: -0.1182 REMARK 3 S21: -0.1105 S22: -0.0191 S23: 0.2782 REMARK 3 S31: -0.0283 S32: -0.0204 S33: -0.0702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13292 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.85500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J9S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.81150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 24.36900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 24.36900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.71725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 24.36900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 24.36900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.90575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 24.36900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 24.36900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 98.71725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 24.36900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 24.36900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.90575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.81150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 145 REMARK 465 GLU A 146 REMARK 465 GLY A 147 REMARK 465 ALA A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 MET A 144 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 103 O1 EDO A 206 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 24 -37.88 -38.69 REMARK 500 LYS A 61 65.57 39.73 REMARK 500 ASN A 115 82.12 -151.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GKT A 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HPX RELATED DB: PDB REMARK 900 RELATED ID: 6HPY RELATED DB: PDB REMARK 900 RELATED ID: 6HPZ RELATED DB: PDB REMARK 900 RELATED ID: 6HQ0 RELATED DB: PDB DBREF 6HPW A 1 148 UNP Q03111 ENL_HUMAN 1 148 SEQADV 6HPW SER A 0 UNP Q03111 EXPRESSION TAG SEQADV 6HPW HIS A 149 UNP Q03111 EXPRESSION TAG SEQADV 6HPW HIS A 150 UNP Q03111 EXPRESSION TAG SEQADV 6HPW HIS A 151 UNP Q03111 EXPRESSION TAG SEQADV 6HPW HIS A 152 UNP Q03111 EXPRESSION TAG SEQADV 6HPW HIS A 153 UNP Q03111 EXPRESSION TAG SEQADV 6HPW HIS A 154 UNP Q03111 EXPRESSION TAG SEQRES 1 A 155 SER MET ASP ASN GLN CYS THR VAL GLN VAL ARG LEU GLU SEQRES 2 A 155 LEU GLY HIS ARG ALA GLN LEU ARG LYS LYS PRO THR THR SEQRES 3 A 155 GLU GLY PHE THR HIS ASP TRP MET VAL PHE VAL ARG GLY SEQRES 4 A 155 PRO GLU GLN CYS ASP ILE GLN HIS PHE VAL GLU LYS VAL SEQRES 5 A 155 VAL PHE TRP LEU HIS ASP SER PHE PRO LYS PRO ARG ARG SEQRES 6 A 155 VAL CYS LYS GLU PRO PRO TYR LYS VAL GLU GLU SER GLY SEQRES 7 A 155 TYR ALA GLY PHE ILE MET PRO ILE GLU VAL HIS PHE LYS SEQRES 8 A 155 ASN LYS GLU GLU PRO ARG LYS VAL CYS PHE THR TYR ASP SEQRES 9 A 155 LEU PHE LEU ASN LEU GLU GLY ASN PRO PRO VAL ASN HIS SEQRES 10 A 155 LEU ARG CYS GLU LYS LEU THR PHE ASN ASN PRO THR THR SEQRES 11 A 155 GLU PHE ARG TYR LYS LEU LEU ARG ALA GLY GLY VAL MET SEQRES 12 A 155 VAL MET PRO GLU GLY ALA HIS HIS HIS HIS HIS HIS HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET EDO A 208 4 HET GKT A 209 27 HETNAM EDO 1,2-ETHANEDIOL HETNAM GKT 3-IODANYL-4-METHYL-~{N}-[2-(PIPERIDIN-1-YLMETHYL)- HETNAM 2 GKT 3~{H}-BENZIMIDAZOL-5-YL]BENZAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 8(C2 H6 O2) FORMUL 10 GKT C21 H23 I N4 O FORMUL 11 HOH *59(H2 O) HELIX 1 AA1 ASP A 43 HIS A 46 5 4 HELIX 2 AA2 THR A 128 ALA A 138 1 11 SHEET 1 AA1 4 TYR A 71 GLY A 77 0 SHEET 2 AA1 4 HIS A 30 ARG A 37 -1 N TRP A 32 O GLU A 75 SHEET 3 AA1 4 THR A 6 LEU A 19 -1 N GLN A 18 O ASP A 31 SHEET 4 AA1 4 VAL A 114 ASN A 125 -1 O ARG A 118 N LEU A 13 SHEET 1 AA2 4 TYR A 71 GLY A 77 0 SHEET 2 AA2 4 HIS A 30 ARG A 37 -1 N TRP A 32 O GLU A 75 SHEET 3 AA2 4 THR A 6 LEU A 19 -1 N GLN A 18 O ASP A 31 SHEET 4 AA2 4 VAL A 141 MET A 142 -1 O VAL A 141 N GLN A 8 SHEET 1 AA3 4 ARG A 63 CYS A 66 0 SHEET 2 AA3 4 VAL A 48 TRP A 54 -1 N PHE A 53 O ARG A 64 SHEET 3 AA3 4 PHE A 81 PHE A 89 -1 O HIS A 88 N LYS A 50 SHEET 4 AA3 4 LYS A 97 LEU A 104 -1 O TYR A 102 N MET A 83 CISPEP 1 PRO A 69 PRO A 70 0 -1.72 CISPEP 2 GLU A 94 PRO A 95 0 -10.46 SITE 1 AC1 8 VAL A 9 ARG A 10 CYS A 42 ILE A 44 SITE 2 AC1 8 PHE A 47 ALA A 138 GLY A 139 GLY A 140 SITE 1 AC2 6 ARG A 20 ASP A 31 GLU A 75 SER A 76 SITE 2 AC2 6 EDO A 203 HOH A 301 SITE 1 AC3 5 GLN A 18 ASP A 31 ASP A 57 EDO A 202 SITE 2 AC3 5 EDO A 204 SITE 1 AC4 3 GLN A 18 ASP A 31 EDO A 203 SITE 1 AC5 3 LYS A 50 ARG A 63 VAL A 65 SITE 1 AC6 3 ASP A 103 PHE A 105 HOH A 326 SITE 1 AC7 3 PHE A 100 THR A 101 ARG A 118 SITE 1 AC8 5 PRO A 95 THR A 123 HOH A 305 HOH A 322 SITE 2 AC8 5 HOH A 331 SITE 1 AC9 13 PHE A 28 HIS A 56 SER A 58 PHE A 59 SITE 2 AC9 13 PRO A 60 GLU A 75 SER A 76 GLY A 77 SITE 3 AC9 13 TYR A 78 ALA A 79 GLY A 80 ARG A 132 SITE 4 AC9 13 HOH A 335 CRYST1 48.738 48.738 131.623 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007597 0.00000