data_6HQ3 # _entry.id 6HQ3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.314 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6HQ3 WWPDB D_1200012068 # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'apo form' _pdbx_database_related.db_id 6HQ2 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6HQ3 _pdbx_database_status.recvd_initial_deposition_date 2018-09-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lovering, A.L.' 1 ? 'Cadby, I.T.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Embo J.' _citation.journal_id_ASTM EMJODG _citation.journal_id_CSD 0897 _citation.journal_id_ISSN 1460-2075 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 38 _citation.language ? _citation.page_first e100772 _citation.page_last e100772 _citation.title 'Nucleotide signaling pathway convergence in a cAMP-sensing bacterial c-di-GMP phosphodiesterase.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.15252/embj.2018100772 _citation.pdbx_database_id_PubMed 31355487 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cadby, I.T.' 1 ? primary 'Basford, S.M.' 2 ? primary 'Nottingham, R.' 3 ? primary 'Meek, R.' 4 ? primary 'Lowry, R.' 5 ? primary 'Lambert, C.' 6 0000-0002-1844-457X primary 'Tridgett, M.' 7 ? primary 'Till, R.' 8 ? primary 'Ahmad, R.' 9 ? primary 'Fung, R.' 10 ? primary 'Hobley, L.' 11 0000-0002-2153-0946 primary 'Hughes, W.S.' 12 ? primary 'Moynihan, P.J.' 13 0000-0003-4182-6223 primary 'Sockett, R.E.' 14 0000-0002-6271-2674 primary 'Lovering, A.L.' 15 0000-0002-1856-7975 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 116.800 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6HQ3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 94.580 _cell.length_a_esd ? _cell.length_b 120.750 _cell.length_b_esd ? _cell.length_c 56.300 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EAL Enzyme Bd1971' 12523.563 4 ? ? ? ? 2 non-polymer syn "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 329.206 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAQSVDIHKDQIIFSEGDAGDCAYIIEKGRVLIYLTKDKEEIPLTILGEGEIFGEMALIDNQNRSASVRALEDVRLAIVT KQQVLERVSTADKVVQLLMRVLLKRLRRKNI ; _entity_poly.pdbx_seq_one_letter_code_can ;AAQSVDIHKDQIIFSEGDAGDCAYIIEKGRVLIYLTKDKEEIPLTILGEGEIFGEMALIDNQNRSASVRALEDVRLAIVT KQQVLERVSTADKVVQLLMRVLLKRLRRKNI ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 GLN n 1 4 SER n 1 5 VAL n 1 6 ASP n 1 7 ILE n 1 8 HIS n 1 9 LYS n 1 10 ASP n 1 11 GLN n 1 12 ILE n 1 13 ILE n 1 14 PHE n 1 15 SER n 1 16 GLU n 1 17 GLY n 1 18 ASP n 1 19 ALA n 1 20 GLY n 1 21 ASP n 1 22 CYS n 1 23 ALA n 1 24 TYR n 1 25 ILE n 1 26 ILE n 1 27 GLU n 1 28 LYS n 1 29 GLY n 1 30 ARG n 1 31 VAL n 1 32 LEU n 1 33 ILE n 1 34 TYR n 1 35 LEU n 1 36 THR n 1 37 LYS n 1 38 ASP n 1 39 LYS n 1 40 GLU n 1 41 GLU n 1 42 ILE n 1 43 PRO n 1 44 LEU n 1 45 THR n 1 46 ILE n 1 47 LEU n 1 48 GLY n 1 49 GLU n 1 50 GLY n 1 51 GLU n 1 52 ILE n 1 53 PHE n 1 54 GLY n 1 55 GLU n 1 56 MET n 1 57 ALA n 1 58 LEU n 1 59 ILE n 1 60 ASP n 1 61 ASN n 1 62 GLN n 1 63 ASN n 1 64 ARG n 1 65 SER n 1 66 ALA n 1 67 SER n 1 68 VAL n 1 69 ARG n 1 70 ALA n 1 71 LEU n 1 72 GLU n 1 73 ASP n 1 74 VAL n 1 75 ARG n 1 76 LEU n 1 77 ALA n 1 78 ILE n 1 79 VAL n 1 80 THR n 1 81 LYS n 1 82 GLN n 1 83 GLN n 1 84 VAL n 1 85 LEU n 1 86 GLU n 1 87 ARG n 1 88 VAL n 1 89 SER n 1 90 THR n 1 91 ALA n 1 92 ASP n 1 93 LYS n 1 94 VAL n 1 95 VAL n 1 96 GLN n 1 97 LEU n 1 98 LEU n 1 99 MET n 1 100 ARG n 1 101 VAL n 1 102 LEU n 1 103 LEU n 1 104 LYS n 1 105 ARG n 1 106 LEU n 1 107 ARG n 1 108 ARG n 1 109 LYS n 1 110 ASN n 1 111 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 111 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Bd1971 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 264462 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6MLN6_BDEBA _struct_ref.pdbx_db_accession Q6MLN6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAQSVDIHKDQIIFSEGDAGDCAYIIEKGRVLIYLTKDKEEIPLTILGEGEIFGEMALIDNQNRSASVRALEDVRLAIVT KQQVLERVSTADKVVQLLMRVLLKRLRRKNI ; _struct_ref.pdbx_align_begin 4 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6HQ3 A 1 ? 111 ? Q6MLN6 4 ? 114 ? 4 114 2 1 6HQ3 B 1 ? 111 ? Q6MLN6 4 ? 114 ? 4 114 3 1 6HQ3 C 1 ? 111 ? Q6MLN6 4 ? 114 ? 4 114 4 1 6HQ3 D 1 ? 111 ? Q6MLN6 4 ? 114 ? 4 114 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CMP non-polymer . "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 'CYCLIC AMP; CAMP' 'C10 H12 N5 O6 P' 329.206 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6HQ3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2M K Nitrate pH 6.9 2.5mM cAMP 20% w/v PEG 3350 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-01-22 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6HQ3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.790 _reflns.d_resolution_low 36.330 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13884 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.500 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.200 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.105 _reflns.pdbx_Rpim_I_all 0.058 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 44245 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.790 2.860 ? ? ? ? ? ? 1031 99.300 ? ? ? ? 0.901 ? ? ? ? ? ? ? ? 2.700 ? ? ? ? 1.131 0.674 ? 1 1 0.518 ? 12.480 36.330 ? ? ? ? ? ? 159 94.200 ? ? ? ? 0.036 ? ? ? ? ? ? ? ? 3.100 ? ? ? ? 0.044 0.025 ? 2 1 0.998 ? # _refine.aniso_B[1][1] 2.5800 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 2.1500 _refine.aniso_B[2][2] -2.6000 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -1.4200 _refine.B_iso_max 166.540 _refine.B_iso_mean 103.4710 _refine.B_iso_min 77.640 _refine.correlation_coeff_Fo_to_Fc 0.9560 _refine.correlation_coeff_Fo_to_Fc_free 0.9260 _refine.details 'U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6HQ3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7900 _refine.ls_d_res_low 36.33 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13219 _refine.ls_number_reflns_R_free 665 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.5000 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2143 _refine.ls_R_factor_R_free 0.2594 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2122 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'full length protein' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.3790 _refine.pdbx_solvent_vdw_probe_radii 1.0000 _refine.pdbx_solvent_ion_probe_radii 0.9000 _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 42.3220 _refine.overall_SU_ML 0.3410 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.7900 _refine_hist.d_res_low 36.33 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3478 _refine_hist.pdbx_number_residues_total 434 _refine_hist.pdbx_B_iso_mean_ligand 92.45 _refine_hist.pdbx_number_atoms_protein 3434 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.019 3504 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 3612 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.586 2.007 4716 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.015 3.000 8274 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.200 5.000 430 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 35.675 24.177 158 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.949 15.000 710 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 18.873 15.000 36 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.100 0.200 572 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 3840 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 734 ? r_gen_planes_other ? ? # loop_ _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'X-RAY DIFFRACTION' 1 1 'interatomic distance' A 6104 0.130 0.050 ? ? ? 2 'X-RAY DIFFRACTION' 1 2 'interatomic distance' B 6104 0.130 0.050 ? ? ? 3 'X-RAY DIFFRACTION' 2 1 'interatomic distance' A 6420 0.110 0.050 ? ? ? 4 'X-RAY DIFFRACTION' 2 2 'interatomic distance' C 6420 0.110 0.050 ? ? ? 5 'X-RAY DIFFRACTION' 3 1 'interatomic distance' A 6060 0.130 0.050 ? ? ? 6 'X-RAY DIFFRACTION' 3 2 'interatomic distance' D 6060 0.130 0.050 ? ? ? 7 'X-RAY DIFFRACTION' 4 1 'interatomic distance' B 6096 0.130 0.050 ? ? ? 8 'X-RAY DIFFRACTION' 4 2 'interatomic distance' C 6096 0.130 0.050 ? ? ? 9 'X-RAY DIFFRACTION' 5 1 'interatomic distance' B 6376 0.100 0.050 ? ? ? 10 'X-RAY DIFFRACTION' 5 2 'interatomic distance' D 6376 0.100 0.050 ? ? ? 11 'X-RAY DIFFRACTION' 6 1 'interatomic distance' C 6118 0.130 0.050 ? ? ? 12 'X-RAY DIFFRACTION' 6 2 'interatomic distance' D 6118 0.130 0.050 ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.7900 _refine_ls_shell.d_res_low 2.8620 _refine_ls_shell.number_reflns_all 1030 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_R_work 973 _refine_ls_shell.percent_reflns_obs 99.0400 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3270 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.3790 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 2 1 A 2 2 C 3 1 A 3 2 D 4 1 B 4 2 C 5 1 B 5 2 D 6 1 C 6 2 D # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 0 0 A 5 A 110 ? ? ? ? ? ? ? ? ? 1 2 0 0 B 5 B 110 ? ? ? ? ? ? ? ? ? 2 1 0 0 A 6 A 113 ? ? ? ? ? ? ? ? ? 2 2 0 0 C 6 C 113 ? ? ? ? ? ? ? ? ? 3 1 0 0 A 5 A 110 ? ? ? ? ? ? ? ? ? 3 2 0 0 D 5 D 110 ? ? ? ? ? ? ? ? ? 4 1 0 0 B 6 B 110 ? ? ? ? ? ? ? ? ? 4 2 0 0 C 6 C 110 ? ? ? ? ? ? ? ? ? 5 1 0 0 B 5 B 111 ? ? ? ? ? ? ? ? ? 5 2 0 0 D 5 D 111 ? ? ? ? ? ? ? ? ? 6 1 0 0 C 6 C 110 ? ? ? ? ? ? ? ? ? 6 2 0 0 D 6 D 110 ? ? ? ? ? ? ? ? ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? 4 ? 5 ? 6 ? # _struct.entry_id 6HQ3 _struct.title 'Structure of EAL Enzyme Bd1971 - halfsite-occupied form' _struct.pdbx_descriptor 'EAL Enzyme Bd1971' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6HQ3 _struct_keywords.text 'EAL, cyclic-di-GMP, cAMP, Bdellovibrio, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 54 ? ASN A 61 ? GLY A 57 ASN A 64 1 ? 8 HELX_P HELX_P2 AA2 LYS A 81 ? THR A 90 ? LYS A 84 THR A 93 1 ? 10 HELX_P HELX_P3 AA3 ASP A 92 ? ILE A 111 ? ASP A 95 ILE A 114 1 ? 20 HELX_P HELX_P4 AA4 GLU B 55 ? ASP B 60 ? GLU B 58 ASP B 63 1 ? 6 HELX_P HELX_P5 AA5 LYS B 81 ? THR B 90 ? LYS B 84 THR B 93 1 ? 10 HELX_P HELX_P6 AA6 ASP B 92 ? ARG B 108 ? ASP B 95 ARG B 111 1 ? 17 HELX_P HELX_P7 AA7 GLY C 54 ? ASN C 61 ? GLY C 57 ASN C 64 1 ? 8 HELX_P HELX_P8 AA8 LYS C 81 ? THR C 90 ? LYS C 84 THR C 93 1 ? 10 HELX_P HELX_P9 AA9 ASP C 92 ? ILE C 111 ? ASP C 95 ILE C 114 1 ? 20 HELX_P HELX_P10 AB1 GLU D 55 ? ASP D 60 ? GLU D 58 ASP D 63 1 ? 6 HELX_P HELX_P11 AB2 LYS D 81 ? THR D 90 ? LYS D 84 THR D 93 1 ? 10 HELX_P HELX_P12 AB3 ASP D 92 ? ARG D 108 ? ASP D 95 ARG D 111 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? AA7 ? 4 ? AA8 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 4 ? ILE A 7 ? SER A 7 ILE A 10 AA1 2 VAL A 74 ? THR A 80 ? VAL A 77 THR A 83 AA1 3 CYS A 22 ? LYS A 28 ? CYS A 25 LYS A 31 AA1 4 ILE A 52 ? PHE A 53 ? ILE A 55 PHE A 56 AA2 1 ILE A 12 ? PHE A 14 ? ILE A 15 PHE A 17 AA2 2 SER A 67 ? ALA A 70 ? SER A 70 ALA A 73 AA2 3 VAL A 31 ? LYS A 37 ? VAL A 34 LYS A 40 AA2 4 GLU A 40 ? LEU A 47 ? GLU A 43 LEU A 50 AA3 1 SER B 4 ? ILE B 7 ? SER B 7 ILE B 10 AA3 2 VAL B 74 ? THR B 80 ? VAL B 77 THR B 83 AA3 3 CYS B 22 ? LYS B 28 ? CYS B 25 LYS B 31 AA3 4 ILE B 52 ? PHE B 53 ? ILE B 55 PHE B 56 AA4 1 ILE B 12 ? PHE B 14 ? ILE B 15 PHE B 17 AA4 2 SER B 67 ? ALA B 70 ? SER B 70 ALA B 73 AA4 3 VAL B 31 ? LYS B 37 ? VAL B 34 LYS B 40 AA4 4 GLU B 40 ? LEU B 47 ? GLU B 43 LEU B 50 AA5 1 SER C 4 ? ILE C 7 ? SER C 7 ILE C 10 AA5 2 VAL C 74 ? THR C 80 ? VAL C 77 THR C 83 AA5 3 CYS C 22 ? LYS C 28 ? CYS C 25 LYS C 31 AA5 4 ILE C 52 ? PHE C 53 ? ILE C 55 PHE C 56 AA6 1 ILE C 12 ? PHE C 14 ? ILE C 15 PHE C 17 AA6 2 SER C 67 ? ALA C 70 ? SER C 70 ALA C 73 AA6 3 VAL C 31 ? LYS C 37 ? VAL C 34 LYS C 40 AA6 4 GLU C 40 ? LEU C 47 ? GLU C 43 LEU C 50 AA7 1 SER D 4 ? ILE D 7 ? SER D 7 ILE D 10 AA7 2 VAL D 74 ? THR D 80 ? VAL D 77 THR D 83 AA7 3 CYS D 22 ? LYS D 28 ? CYS D 25 LYS D 31 AA7 4 ILE D 52 ? PHE D 53 ? ILE D 55 PHE D 56 AA8 1 ILE D 12 ? PHE D 14 ? ILE D 15 PHE D 17 AA8 2 SER D 67 ? ALA D 70 ? SER D 70 ALA D 73 AA8 3 VAL D 31 ? LYS D 37 ? VAL D 34 LYS D 40 AA8 4 GLU D 40 ? LEU D 47 ? GLU D 43 LEU D 50 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 7 ? N ILE A 10 O VAL A 74 ? O VAL A 77 AA1 2 3 O ALA A 77 ? O ALA A 80 N ILE A 25 ? N ILE A 28 AA1 3 4 N TYR A 24 ? N TYR A 27 O PHE A 53 ? O PHE A 56 AA2 1 2 N PHE A 14 ? N PHE A 17 O VAL A 68 ? O VAL A 71 AA2 2 3 O SER A 67 ? O SER A 70 N TYR A 34 ? N TYR A 37 AA2 3 4 N LEU A 35 ? N LEU A 38 O ILE A 42 ? O ILE A 45 AA3 1 2 N ILE B 7 ? N ILE B 10 O VAL B 74 ? O VAL B 77 AA3 2 3 O ALA B 77 ? O ALA B 80 N ILE B 25 ? N ILE B 28 AA3 3 4 N TYR B 24 ? N TYR B 27 O PHE B 53 ? O PHE B 56 AA4 1 2 N PHE B 14 ? N PHE B 17 O VAL B 68 ? O VAL B 71 AA4 2 3 O SER B 67 ? O SER B 70 N TYR B 34 ? N TYR B 37 AA4 3 4 N LEU B 35 ? N LEU B 38 O ILE B 42 ? O ILE B 45 AA5 1 2 N ILE C 7 ? N ILE C 10 O VAL C 74 ? O VAL C 77 AA5 2 3 O ALA C 77 ? O ALA C 80 N ILE C 25 ? N ILE C 28 AA5 3 4 N TYR C 24 ? N TYR C 27 O PHE C 53 ? O PHE C 56 AA6 1 2 N PHE C 14 ? N PHE C 17 O VAL C 68 ? O VAL C 71 AA6 2 3 O SER C 67 ? O SER C 70 N TYR C 34 ? N TYR C 37 AA6 3 4 N LEU C 35 ? N LEU C 38 O ILE C 42 ? O ILE C 45 AA7 1 2 N ILE D 7 ? N ILE D 10 O VAL D 74 ? O VAL D 77 AA7 2 3 O ALA D 77 ? O ALA D 80 N ILE D 25 ? N ILE D 28 AA7 3 4 N TYR D 24 ? N TYR D 27 O PHE D 53 ? O PHE D 56 AA8 1 2 N PHE D 14 ? N PHE D 17 O VAL D 68 ? O VAL D 71 AA8 2 3 O SER D 67 ? O SER D 70 N TYR D 34 ? N TYR D 37 AA8 3 4 N LEU D 35 ? N LEU D 38 O ILE D 42 ? O ILE D 45 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CMP 901 ? 10 'binding site for residue CMP B 901' AC2 Software D CMP 901 ? 11 'binding site for residue CMP D 901' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 PHE B 14 ? PHE B 17 . ? 1_555 ? 2 AC1 10 GLY B 54 ? GLY B 57 . ? 1_555 ? 3 AC1 10 GLU B 55 ? GLU B 58 . ? 1_555 ? 4 AC1 10 MET B 56 ? MET B 59 . ? 1_555 ? 5 AC1 10 ALA B 57 ? ALA B 60 . ? 1_555 ? 6 AC1 10 ARG B 64 ? ARG B 67 . ? 1_555 ? 7 AC1 10 SER B 65 ? SER B 68 . ? 1_555 ? 8 AC1 10 ALA B 66 ? ALA B 69 . ? 1_555 ? 9 AC1 10 ARG C 105 ? ARG C 108 . ? 1_555 ? 10 AC1 10 ARG C 108 ? ARG C 111 . ? 1_555 ? 11 AC2 11 ARG A 105 ? ARG A 108 . ? 1_555 ? 12 AC2 11 ARG A 108 ? ARG A 111 . ? 1_555 ? 13 AC2 11 PHE D 14 ? PHE D 17 . ? 1_555 ? 14 AC2 11 PHE D 53 ? PHE D 56 . ? 1_555 ? 15 AC2 11 GLY D 54 ? GLY D 57 . ? 1_555 ? 16 AC2 11 GLU D 55 ? GLU D 58 . ? 1_555 ? 17 AC2 11 MET D 56 ? MET D 59 . ? 1_555 ? 18 AC2 11 ALA D 57 ? ALA D 60 . ? 1_555 ? 19 AC2 11 ARG D 64 ? ARG D 67 . ? 1_555 ? 20 AC2 11 SER D 65 ? SER D 68 . ? 1_555 ? 21 AC2 11 ALA D 66 ? ALA D 69 . ? 1_555 ? # _atom_sites.entry_id 6HQ3 _atom_sites.fract_transf_matrix[1][1] 0.010573 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005341 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008282 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019899 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 4 4 ALA ALA A . n A 1 2 ALA 2 5 5 ALA ALA A . n A 1 3 GLN 3 6 6 GLN GLN A . n A 1 4 SER 4 7 7 SER SER A . n A 1 5 VAL 5 8 8 VAL VAL A . n A 1 6 ASP 6 9 9 ASP ASP A . n A 1 7 ILE 7 10 10 ILE ILE A . n A 1 8 HIS 8 11 11 HIS HIS A . n A 1 9 LYS 9 12 12 LYS LYS A . n A 1 10 ASP 10 13 13 ASP ASP A . n A 1 11 GLN 11 14 14 GLN GLN A . n A 1 12 ILE 12 15 15 ILE ILE A . n A 1 13 ILE 13 16 16 ILE ILE A . n A 1 14 PHE 14 17 17 PHE PHE A . n A 1 15 SER 15 18 18 SER SER A . n A 1 16 GLU 16 19 19 GLU GLU A . n A 1 17 GLY 17 20 20 GLY GLY A . n A 1 18 ASP 18 21 21 ASP ASP A . n A 1 19 ALA 19 22 22 ALA ALA A . n A 1 20 GLY 20 23 23 GLY GLY A . n A 1 21 ASP 21 24 24 ASP ASP A . n A 1 22 CYS 22 25 25 CYS CYS A . n A 1 23 ALA 23 26 26 ALA ALA A . n A 1 24 TYR 24 27 27 TYR TYR A . n A 1 25 ILE 25 28 28 ILE ILE A . n A 1 26 ILE 26 29 29 ILE ILE A . n A 1 27 GLU 27 30 30 GLU GLU A . n A 1 28 LYS 28 31 31 LYS LYS A . n A 1 29 GLY 29 32 32 GLY GLY A . n A 1 30 ARG 30 33 33 ARG ARG A . n A 1 31 VAL 31 34 34 VAL VAL A . n A 1 32 LEU 32 35 35 LEU LEU A . n A 1 33 ILE 33 36 36 ILE ILE A . n A 1 34 TYR 34 37 37 TYR TYR A . n A 1 35 LEU 35 38 38 LEU LEU A . n A 1 36 THR 36 39 39 THR THR A . n A 1 37 LYS 37 40 40 LYS LYS A . n A 1 38 ASP 38 41 41 ASP ASP A . n A 1 39 LYS 39 42 42 LYS LYS A . n A 1 40 GLU 40 43 43 GLU GLU A . n A 1 41 GLU 41 44 44 GLU GLU A . n A 1 42 ILE 42 45 45 ILE ILE A . n A 1 43 PRO 43 46 46 PRO PRO A . n A 1 44 LEU 44 47 47 LEU LEU A . n A 1 45 THR 45 48 48 THR THR A . n A 1 46 ILE 46 49 49 ILE ILE A . n A 1 47 LEU 47 50 50 LEU LEU A . n A 1 48 GLY 48 51 51 GLY GLY A . n A 1 49 GLU 49 52 52 GLU GLU A . n A 1 50 GLY 50 53 53 GLY GLY A . n A 1 51 GLU 51 54 54 GLU GLU A . n A 1 52 ILE 52 55 55 ILE ILE A . n A 1 53 PHE 53 56 56 PHE PHE A . n A 1 54 GLY 54 57 57 GLY GLY A . n A 1 55 GLU 55 58 58 GLU GLU A . n A 1 56 MET 56 59 59 MET MET A . n A 1 57 ALA 57 60 60 ALA ALA A . n A 1 58 LEU 58 61 61 LEU LEU A . n A 1 59 ILE 59 62 62 ILE ILE A . n A 1 60 ASP 60 63 63 ASP ASP A . n A 1 61 ASN 61 64 64 ASN ASN A . n A 1 62 GLN 62 65 65 GLN GLN A . n A 1 63 ASN 63 66 66 ASN ASN A . n A 1 64 ARG 64 67 67 ARG ARG A . n A 1 65 SER 65 68 68 SER SER A . n A 1 66 ALA 66 69 69 ALA ALA A . n A 1 67 SER 67 70 70 SER SER A . n A 1 68 VAL 68 71 71 VAL VAL A . n A 1 69 ARG 69 72 72 ARG ARG A . n A 1 70 ALA 70 73 73 ALA ALA A . n A 1 71 LEU 71 74 74 LEU LEU A . n A 1 72 GLU 72 75 75 GLU GLU A . n A 1 73 ASP 73 76 76 ASP ASP A . n A 1 74 VAL 74 77 77 VAL VAL A . n A 1 75 ARG 75 78 78 ARG ARG A . n A 1 76 LEU 76 79 79 LEU LEU A . n A 1 77 ALA 77 80 80 ALA ALA A . n A 1 78 ILE 78 81 81 ILE ILE A . n A 1 79 VAL 79 82 82 VAL VAL A . n A 1 80 THR 80 83 83 THR THR A . n A 1 81 LYS 81 84 84 LYS LYS A . n A 1 82 GLN 82 85 85 GLN GLN A . n A 1 83 GLN 83 86 86 GLN GLN A . n A 1 84 VAL 84 87 87 VAL VAL A . n A 1 85 LEU 85 88 88 LEU LEU A . n A 1 86 GLU 86 89 89 GLU GLU A . n A 1 87 ARG 87 90 90 ARG ARG A . n A 1 88 VAL 88 91 91 VAL VAL A . n A 1 89 SER 89 92 92 SER SER A . n A 1 90 THR 90 93 93 THR THR A . n A 1 91 ALA 91 94 94 ALA ALA A . n A 1 92 ASP 92 95 95 ASP ASP A . n A 1 93 LYS 93 96 96 LYS LYS A . n A 1 94 VAL 94 97 97 VAL VAL A . n A 1 95 VAL 95 98 98 VAL VAL A . n A 1 96 GLN 96 99 99 GLN GLN A . n A 1 97 LEU 97 100 100 LEU LEU A . n A 1 98 LEU 98 101 101 LEU LEU A . n A 1 99 MET 99 102 102 MET MET A . n A 1 100 ARG 100 103 103 ARG ARG A . n A 1 101 VAL 101 104 104 VAL VAL A . n A 1 102 LEU 102 105 105 LEU LEU A . n A 1 103 LEU 103 106 106 LEU LEU A . n A 1 104 LYS 104 107 107 LYS LYS A . n A 1 105 ARG 105 108 108 ARG ARG A . n A 1 106 LEU 106 109 109 LEU LEU A . n A 1 107 ARG 107 110 110 ARG ARG A . n A 1 108 ARG 108 111 111 ARG ARG A . n A 1 109 LYS 109 112 112 LYS LYS A . n A 1 110 ASN 110 113 113 ASN ASN A . n A 1 111 ILE 111 114 114 ILE ILE A . n B 1 1 ALA 1 4 ? ? ? B . n B 1 2 ALA 2 5 5 ALA ALA B . n B 1 3 GLN 3 6 6 GLN GLN B . n B 1 4 SER 4 7 7 SER SER B . n B 1 5 VAL 5 8 8 VAL VAL B . n B 1 6 ASP 6 9 9 ASP ASP B . n B 1 7 ILE 7 10 10 ILE ILE B . n B 1 8 HIS 8 11 11 HIS HIS B . n B 1 9 LYS 9 12 12 LYS LYS B . n B 1 10 ASP 10 13 13 ASP ASP B . n B 1 11 GLN 11 14 14 GLN GLN B . n B 1 12 ILE 12 15 15 ILE ILE B . n B 1 13 ILE 13 16 16 ILE ILE B . n B 1 14 PHE 14 17 17 PHE PHE B . n B 1 15 SER 15 18 18 SER SER B . n B 1 16 GLU 16 19 19 GLU GLU B . n B 1 17 GLY 17 20 20 GLY GLY B . n B 1 18 ASP 18 21 21 ASP ASP B . n B 1 19 ALA 19 22 22 ALA ALA B . n B 1 20 GLY 20 23 23 GLY GLY B . n B 1 21 ASP 21 24 24 ASP ASP B . n B 1 22 CYS 22 25 25 CYS CYS B . n B 1 23 ALA 23 26 26 ALA ALA B . n B 1 24 TYR 24 27 27 TYR TYR B . n B 1 25 ILE 25 28 28 ILE ILE B . n B 1 26 ILE 26 29 29 ILE ILE B . n B 1 27 GLU 27 30 30 GLU GLU B . n B 1 28 LYS 28 31 31 LYS LYS B . n B 1 29 GLY 29 32 32 GLY GLY B . n B 1 30 ARG 30 33 33 ARG ARG B . n B 1 31 VAL 31 34 34 VAL VAL B . n B 1 32 LEU 32 35 35 LEU LEU B . n B 1 33 ILE 33 36 36 ILE ILE B . n B 1 34 TYR 34 37 37 TYR TYR B . n B 1 35 LEU 35 38 38 LEU LEU B . n B 1 36 THR 36 39 39 THR THR B . n B 1 37 LYS 37 40 40 LYS LYS B . n B 1 38 ASP 38 41 41 ASP ASP B . n B 1 39 LYS 39 42 42 LYS LYS B . n B 1 40 GLU 40 43 43 GLU GLU B . n B 1 41 GLU 41 44 44 GLU GLU B . n B 1 42 ILE 42 45 45 ILE ILE B . n B 1 43 PRO 43 46 46 PRO PRO B . n B 1 44 LEU 44 47 47 LEU LEU B . n B 1 45 THR 45 48 48 THR THR B . n B 1 46 ILE 46 49 49 ILE ILE B . n B 1 47 LEU 47 50 50 LEU LEU B . n B 1 48 GLY 48 51 51 GLY GLY B . n B 1 49 GLU 49 52 52 GLU GLU B . n B 1 50 GLY 50 53 53 GLY GLY B . n B 1 51 GLU 51 54 54 GLU GLU B . n B 1 52 ILE 52 55 55 ILE ILE B . n B 1 53 PHE 53 56 56 PHE PHE B . n B 1 54 GLY 54 57 57 GLY GLY B . n B 1 55 GLU 55 58 58 GLU GLU B . n B 1 56 MET 56 59 59 MET MET B . n B 1 57 ALA 57 60 60 ALA ALA B . n B 1 58 LEU 58 61 61 LEU LEU B . n B 1 59 ILE 59 62 62 ILE ILE B . n B 1 60 ASP 60 63 63 ASP ASP B . n B 1 61 ASN 61 64 64 ASN ASN B . n B 1 62 GLN 62 65 65 GLN GLN B . n B 1 63 ASN 63 66 66 ASN ASN B . n B 1 64 ARG 64 67 67 ARG ARG B . n B 1 65 SER 65 68 68 SER SER B . n B 1 66 ALA 66 69 69 ALA ALA B . n B 1 67 SER 67 70 70 SER SER B . n B 1 68 VAL 68 71 71 VAL VAL B . n B 1 69 ARG 69 72 72 ARG ARG B . n B 1 70 ALA 70 73 73 ALA ALA B . n B 1 71 LEU 71 74 74 LEU LEU B . n B 1 72 GLU 72 75 75 GLU GLU B . n B 1 73 ASP 73 76 76 ASP ASP B . n B 1 74 VAL 74 77 77 VAL VAL B . n B 1 75 ARG 75 78 78 ARG ARG B . n B 1 76 LEU 76 79 79 LEU LEU B . n B 1 77 ALA 77 80 80 ALA ALA B . n B 1 78 ILE 78 81 81 ILE ILE B . n B 1 79 VAL 79 82 82 VAL VAL B . n B 1 80 THR 80 83 83 THR THR B . n B 1 81 LYS 81 84 84 LYS LYS B . n B 1 82 GLN 82 85 85 GLN GLN B . n B 1 83 GLN 83 86 86 GLN GLN B . n B 1 84 VAL 84 87 87 VAL VAL B . n B 1 85 LEU 85 88 88 LEU LEU B . n B 1 86 GLU 86 89 89 GLU GLU B . n B 1 87 ARG 87 90 90 ARG ARG B . n B 1 88 VAL 88 91 91 VAL VAL B . n B 1 89 SER 89 92 92 SER SER B . n B 1 90 THR 90 93 93 THR THR B . n B 1 91 ALA 91 94 94 ALA ALA B . n B 1 92 ASP 92 95 95 ASP ASP B . n B 1 93 LYS 93 96 96 LYS LYS B . n B 1 94 VAL 94 97 97 VAL VAL B . n B 1 95 VAL 95 98 98 VAL VAL B . n B 1 96 GLN 96 99 99 GLN GLN B . n B 1 97 LEU 97 100 100 LEU LEU B . n B 1 98 LEU 98 101 101 LEU LEU B . n B 1 99 MET 99 102 102 MET MET B . n B 1 100 ARG 100 103 103 ARG ARG B . n B 1 101 VAL 101 104 104 VAL VAL B . n B 1 102 LEU 102 105 105 LEU LEU B . n B 1 103 LEU 103 106 106 LEU LEU B . n B 1 104 LYS 104 107 107 LYS LYS B . n B 1 105 ARG 105 108 108 ARG ARG B . n B 1 106 LEU 106 109 109 LEU LEU B . n B 1 107 ARG 107 110 110 ARG ARG B . n B 1 108 ARG 108 111 111 ARG ARG B . n B 1 109 LYS 109 112 ? ? ? B . n B 1 110 ASN 110 113 ? ? ? B . n B 1 111 ILE 111 114 ? ? ? B . n C 1 1 ALA 1 4 ? ? ? C . n C 1 2 ALA 2 5 ? ? ? C . n C 1 3 GLN 3 6 6 GLN GLN C . n C 1 4 SER 4 7 7 SER SER C . n C 1 5 VAL 5 8 8 VAL VAL C . n C 1 6 ASP 6 9 9 ASP ASP C . n C 1 7 ILE 7 10 10 ILE ILE C . n C 1 8 HIS 8 11 11 HIS HIS C . n C 1 9 LYS 9 12 12 LYS LYS C . n C 1 10 ASP 10 13 13 ASP ASP C . n C 1 11 GLN 11 14 14 GLN GLN C . n C 1 12 ILE 12 15 15 ILE ILE C . n C 1 13 ILE 13 16 16 ILE ILE C . n C 1 14 PHE 14 17 17 PHE PHE C . n C 1 15 SER 15 18 18 SER SER C . n C 1 16 GLU 16 19 19 GLU GLU C . n C 1 17 GLY 17 20 20 GLY GLY C . n C 1 18 ASP 18 21 21 ASP ASP C . n C 1 19 ALA 19 22 22 ALA ALA C . n C 1 20 GLY 20 23 23 GLY GLY C . n C 1 21 ASP 21 24 24 ASP ASP C . n C 1 22 CYS 22 25 25 CYS CYS C . n C 1 23 ALA 23 26 26 ALA ALA C . n C 1 24 TYR 24 27 27 TYR TYR C . n C 1 25 ILE 25 28 28 ILE ILE C . n C 1 26 ILE 26 29 29 ILE ILE C . n C 1 27 GLU 27 30 30 GLU GLU C . n C 1 28 LYS 28 31 31 LYS LYS C . n C 1 29 GLY 29 32 32 GLY GLY C . n C 1 30 ARG 30 33 33 ARG ARG C . n C 1 31 VAL 31 34 34 VAL VAL C . n C 1 32 LEU 32 35 35 LEU LEU C . n C 1 33 ILE 33 36 36 ILE ILE C . n C 1 34 TYR 34 37 37 TYR TYR C . n C 1 35 LEU 35 38 38 LEU LEU C . n C 1 36 THR 36 39 39 THR THR C . n C 1 37 LYS 37 40 40 LYS LYS C . n C 1 38 ASP 38 41 41 ASP ASP C . n C 1 39 LYS 39 42 42 LYS LYS C . n C 1 40 GLU 40 43 43 GLU GLU C . n C 1 41 GLU 41 44 44 GLU GLU C . n C 1 42 ILE 42 45 45 ILE ILE C . n C 1 43 PRO 43 46 46 PRO PRO C . n C 1 44 LEU 44 47 47 LEU LEU C . n C 1 45 THR 45 48 48 THR THR C . n C 1 46 ILE 46 49 49 ILE ILE C . n C 1 47 LEU 47 50 50 LEU LEU C . n C 1 48 GLY 48 51 51 GLY GLY C . n C 1 49 GLU 49 52 52 GLU GLU C . n C 1 50 GLY 50 53 53 GLY GLY C . n C 1 51 GLU 51 54 54 GLU GLU C . n C 1 52 ILE 52 55 55 ILE ILE C . n C 1 53 PHE 53 56 56 PHE PHE C . n C 1 54 GLY 54 57 57 GLY GLY C . n C 1 55 GLU 55 58 58 GLU GLU C . n C 1 56 MET 56 59 59 MET MET C . n C 1 57 ALA 57 60 60 ALA ALA C . n C 1 58 LEU 58 61 61 LEU LEU C . n C 1 59 ILE 59 62 62 ILE ILE C . n C 1 60 ASP 60 63 63 ASP ASP C . n C 1 61 ASN 61 64 64 ASN ASN C . n C 1 62 GLN 62 65 65 GLN GLN C . n C 1 63 ASN 63 66 66 ASN ASN C . n C 1 64 ARG 64 67 67 ARG ARG C . n C 1 65 SER 65 68 68 SER SER C . n C 1 66 ALA 66 69 69 ALA ALA C . n C 1 67 SER 67 70 70 SER SER C . n C 1 68 VAL 68 71 71 VAL VAL C . n C 1 69 ARG 69 72 72 ARG ARG C . n C 1 70 ALA 70 73 73 ALA ALA C . n C 1 71 LEU 71 74 74 LEU LEU C . n C 1 72 GLU 72 75 75 GLU GLU C . n C 1 73 ASP 73 76 76 ASP ASP C . n C 1 74 VAL 74 77 77 VAL VAL C . n C 1 75 ARG 75 78 78 ARG ARG C . n C 1 76 LEU 76 79 79 LEU LEU C . n C 1 77 ALA 77 80 80 ALA ALA C . n C 1 78 ILE 78 81 81 ILE ILE C . n C 1 79 VAL 79 82 82 VAL VAL C . n C 1 80 THR 80 83 83 THR THR C . n C 1 81 LYS 81 84 84 LYS LYS C . n C 1 82 GLN 82 85 85 GLN GLN C . n C 1 83 GLN 83 86 86 GLN GLN C . n C 1 84 VAL 84 87 87 VAL VAL C . n C 1 85 LEU 85 88 88 LEU LEU C . n C 1 86 GLU 86 89 89 GLU GLU C . n C 1 87 ARG 87 90 90 ARG ARG C . n C 1 88 VAL 88 91 91 VAL VAL C . n C 1 89 SER 89 92 92 SER SER C . n C 1 90 THR 90 93 93 THR THR C . n C 1 91 ALA 91 94 94 ALA ALA C . n C 1 92 ASP 92 95 95 ASP ASP C . n C 1 93 LYS 93 96 96 LYS LYS C . n C 1 94 VAL 94 97 97 VAL VAL C . n C 1 95 VAL 95 98 98 VAL VAL C . n C 1 96 GLN 96 99 99 GLN GLN C . n C 1 97 LEU 97 100 100 LEU LEU C . n C 1 98 LEU 98 101 101 LEU LEU C . n C 1 99 MET 99 102 102 MET MET C . n C 1 100 ARG 100 103 103 ARG ARG C . n C 1 101 VAL 101 104 104 VAL VAL C . n C 1 102 LEU 102 105 105 LEU LEU C . n C 1 103 LEU 103 106 106 LEU LEU C . n C 1 104 LYS 104 107 107 LYS LYS C . n C 1 105 ARG 105 108 108 ARG ARG C . n C 1 106 LEU 106 109 109 LEU LEU C . n C 1 107 ARG 107 110 110 ARG ARG C . n C 1 108 ARG 108 111 111 ARG ARG C . n C 1 109 LYS 109 112 112 LYS LYS C . n C 1 110 ASN 110 113 113 ASN ASN C . n C 1 111 ILE 111 114 114 ILE ILE C . n D 1 1 ALA 1 4 ? ? ? D . n D 1 2 ALA 2 5 5 ALA ALA D . n D 1 3 GLN 3 6 6 GLN GLN D . n D 1 4 SER 4 7 7 SER SER D . n D 1 5 VAL 5 8 8 VAL VAL D . n D 1 6 ASP 6 9 9 ASP ASP D . n D 1 7 ILE 7 10 10 ILE ILE D . n D 1 8 HIS 8 11 11 HIS HIS D . n D 1 9 LYS 9 12 12 LYS LYS D . n D 1 10 ASP 10 13 13 ASP ASP D . n D 1 11 GLN 11 14 14 GLN GLN D . n D 1 12 ILE 12 15 15 ILE ILE D . n D 1 13 ILE 13 16 16 ILE ILE D . n D 1 14 PHE 14 17 17 PHE PHE D . n D 1 15 SER 15 18 18 SER SER D . n D 1 16 GLU 16 19 19 GLU GLU D . n D 1 17 GLY 17 20 20 GLY GLY D . n D 1 18 ASP 18 21 21 ASP ASP D . n D 1 19 ALA 19 22 22 ALA ALA D . n D 1 20 GLY 20 23 23 GLY GLY D . n D 1 21 ASP 21 24 24 ASP ASP D . n D 1 22 CYS 22 25 25 CYS CYS D . n D 1 23 ALA 23 26 26 ALA ALA D . n D 1 24 TYR 24 27 27 TYR TYR D . n D 1 25 ILE 25 28 28 ILE ILE D . n D 1 26 ILE 26 29 29 ILE ILE D . n D 1 27 GLU 27 30 30 GLU GLU D . n D 1 28 LYS 28 31 31 LYS LYS D . n D 1 29 GLY 29 32 32 GLY GLY D . n D 1 30 ARG 30 33 33 ARG ARG D . n D 1 31 VAL 31 34 34 VAL VAL D . n D 1 32 LEU 32 35 35 LEU LEU D . n D 1 33 ILE 33 36 36 ILE ILE D . n D 1 34 TYR 34 37 37 TYR TYR D . n D 1 35 LEU 35 38 38 LEU LEU D . n D 1 36 THR 36 39 39 THR THR D . n D 1 37 LYS 37 40 40 LYS LYS D . n D 1 38 ASP 38 41 41 ASP ASP D . n D 1 39 LYS 39 42 42 LYS LYS D . n D 1 40 GLU 40 43 43 GLU GLU D . n D 1 41 GLU 41 44 44 GLU GLU D . n D 1 42 ILE 42 45 45 ILE ILE D . n D 1 43 PRO 43 46 46 PRO PRO D . n D 1 44 LEU 44 47 47 LEU LEU D . n D 1 45 THR 45 48 48 THR THR D . n D 1 46 ILE 46 49 49 ILE ILE D . n D 1 47 LEU 47 50 50 LEU LEU D . n D 1 48 GLY 48 51 51 GLY GLY D . n D 1 49 GLU 49 52 52 GLU GLU D . n D 1 50 GLY 50 53 53 GLY GLY D . n D 1 51 GLU 51 54 54 GLU GLU D . n D 1 52 ILE 52 55 55 ILE ILE D . n D 1 53 PHE 53 56 56 PHE PHE D . n D 1 54 GLY 54 57 57 GLY GLY D . n D 1 55 GLU 55 58 58 GLU GLU D . n D 1 56 MET 56 59 59 MET MET D . n D 1 57 ALA 57 60 60 ALA ALA D . n D 1 58 LEU 58 61 61 LEU LEU D . n D 1 59 ILE 59 62 62 ILE ILE D . n D 1 60 ASP 60 63 63 ASP ASP D . n D 1 61 ASN 61 64 64 ASN ASN D . n D 1 62 GLN 62 65 65 GLN GLN D . n D 1 63 ASN 63 66 66 ASN ASN D . n D 1 64 ARG 64 67 67 ARG ARG D . n D 1 65 SER 65 68 68 SER SER D . n D 1 66 ALA 66 69 69 ALA ALA D . n D 1 67 SER 67 70 70 SER SER D . n D 1 68 VAL 68 71 71 VAL VAL D . n D 1 69 ARG 69 72 72 ARG ARG D . n D 1 70 ALA 70 73 73 ALA ALA D . n D 1 71 LEU 71 74 74 LEU LEU D . n D 1 72 GLU 72 75 75 GLU GLU D . n D 1 73 ASP 73 76 76 ASP ASP D . n D 1 74 VAL 74 77 77 VAL VAL D . n D 1 75 ARG 75 78 78 ARG ARG D . n D 1 76 LEU 76 79 79 LEU LEU D . n D 1 77 ALA 77 80 80 ALA ALA D . n D 1 78 ILE 78 81 81 ILE ILE D . n D 1 79 VAL 79 82 82 VAL VAL D . n D 1 80 THR 80 83 83 THR THR D . n D 1 81 LYS 81 84 84 LYS LYS D . n D 1 82 GLN 82 85 85 GLN GLN D . n D 1 83 GLN 83 86 86 GLN GLN D . n D 1 84 VAL 84 87 87 VAL VAL D . n D 1 85 LEU 85 88 88 LEU LEU D . n D 1 86 GLU 86 89 89 GLU GLU D . n D 1 87 ARG 87 90 90 ARG ARG D . n D 1 88 VAL 88 91 91 VAL VAL D . n D 1 89 SER 89 92 92 SER SER D . n D 1 90 THR 90 93 93 THR THR D . n D 1 91 ALA 91 94 94 ALA ALA D . n D 1 92 ASP 92 95 95 ASP ASP D . n D 1 93 LYS 93 96 96 LYS LYS D . n D 1 94 VAL 94 97 97 VAL VAL D . n D 1 95 VAL 95 98 98 VAL VAL D . n D 1 96 GLN 96 99 99 GLN GLN D . n D 1 97 LEU 97 100 100 LEU LEU D . n D 1 98 LEU 98 101 101 LEU LEU D . n D 1 99 MET 99 102 102 MET MET D . n D 1 100 ARG 100 103 103 ARG ARG D . n D 1 101 VAL 101 104 104 VAL VAL D . n D 1 102 LEU 102 105 105 LEU LEU D . n D 1 103 LEU 103 106 106 LEU LEU D . n D 1 104 LYS 104 107 107 LYS LYS D . n D 1 105 ARG 105 108 108 ARG ARG D . n D 1 106 LEU 106 109 109 LEU LEU D . n D 1 107 ARG 107 110 110 ARG ARG D . n D 1 108 ARG 108 111 111 ARG ARG D . n D 1 109 LYS 109 112 ? ? ? D . n D 1 110 ASN 110 113 ? ? ? D . n D 1 111 ILE 111 114 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CMP 1 901 901 CMP CMP B . F 2 CMP 1 901 901 CMP CMP D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,F 2 1 B,C,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3290 ? 1 MORE -25 ? 1 'SSA (A^2)' 12050 ? 2 'ABSA (A^2)' 3220 ? 2 MORE -25 ? 2 'SSA (A^2)' 11890 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-07-31 2 'Structure model' 1 1 2019-08-14 3 'Structure model' 1 2 2019-09-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_citation.journal_volume' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -36.3520 -14.7820 13.4420 0.4453 0.1292 0.1205 -0.0394 0.1472 0.0357 2.0756 6.5468 2.7969 -0.4330 -0.0298 1.7609 -0.1541 0.1904 -0.0363 -0.3549 -0.0133 0.5661 0.3885 0.2051 -0.1413 'X-RAY DIFFRACTION' 2 ? refined -15.0900 2.8040 3.7040 0.5469 0.0244 0.0563 0.0197 0.1375 0.0063 5.2128 3.9245 1.7421 1.8001 -0.2474 0.5230 -0.1427 0.1996 -0.0569 -0.1433 0.2096 0.1335 -0.0578 0.2250 0.0175 'X-RAY DIFFRACTION' 3 ? refined -22.9900 -16.4010 -12.8510 0.7558 0.2334 0.0401 -0.1174 0.1474 0.0195 2.5073 6.8005 2.6252 0.6143 -0.2234 1.1620 -0.0728 0.0465 0.0262 0.5291 0.1366 -0.1369 -0.9764 -0.0625 -0.0156 'X-RAY DIFFRACTION' 4 ? refined -17.9640 -33.2210 10.5200 0.7140 0.0935 0.1884 -0.0294 0.1301 -0.0988 3.6998 3.1194 3.1526 -1.7585 0.9838 -1.0398 -0.2507 0.3559 -0.1052 -0.0678 -0.0464 -0.4093 0.1130 0.2169 0.2313 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 4 A 114 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 5 B 111 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 6 C 114 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 5 D 111 ? ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.3.11 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0151 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 D _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 33 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 LEU _pdbx_validate_symm_contact.auth_seq_id_2 74 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_556 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B ALA 4 ? B ALA 1 2 1 Y 1 B LYS 112 ? B LYS 109 3 1 Y 1 B ASN 113 ? B ASN 110 4 1 Y 1 B ILE 114 ? B ILE 111 5 1 Y 1 C ALA 4 ? C ALA 1 6 1 Y 1 C ALA 5 ? C ALA 2 7 1 Y 1 D ALA 4 ? D ALA 1 8 1 Y 1 D LYS 112 ? D LYS 109 9 1 Y 1 D ASN 113 ? D ASN 110 10 1 Y 1 D ILE 114 ? D ILE 111 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _pdbx_entity_nonpoly.comp_id CMP # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #