HEADER SIGNALING PROTEIN 24-SEP-18 6HQ3 TITLE STRUCTURE OF EAL ENZYME BD1971 - HALFSITE-OCCUPIED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: EAL ENZYME BD1971; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS (STRAIN ATCC 15356 / SOURCE 3 DSM 50701 / NCIB 9529 / HD100); SOURCE 4 ORGANISM_TAXID: 264462; SOURCE 5 GENE: BD1971; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EAL, CYCLIC-DI-GMP, CAMP, BDELLOVIBRIO, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.LOVERING,I.T.CADBY REVDAT 3 11-SEP-19 6HQ3 1 JRNL REVDAT 2 14-AUG-19 6HQ3 1 JRNL REVDAT 1 31-JUL-19 6HQ3 0 JRNL AUTH I.T.CADBY,S.M.BASFORD,R.NOTTINGHAM,R.MEEK,R.LOWRY,C.LAMBERT, JRNL AUTH 2 M.TRIDGETT,R.TILL,R.AHMAD,R.FUNG,L.HOBLEY,W.S.HUGHES, JRNL AUTH 3 P.J.MOYNIHAN,R.E.SOCKETT,A.L.LOVERING JRNL TITL NUCLEOTIDE SIGNALING PATHWAY CONVERGENCE IN A CAMP-SENSING JRNL TITL 2 BACTERIAL C-DI-GMP PHOSPHODIESTERASE. JRNL REF EMBO J. V. 38 00772 2019 JRNL REFN ESSN 1460-2075 JRNL PMID 31355487 JRNL DOI 10.15252/EMBJ.2018100772 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 13219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 665 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 973 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3790 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.58000 REMARK 3 B22 (A**2) : -2.60000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.379 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.341 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.322 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3504 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3612 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4716 ; 1.586 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8274 ; 1.015 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 6.200 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;35.675 ;24.177 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 710 ;17.949 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3840 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 734 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 110 B 5 110 6104 0.130 0.050 REMARK 3 2 A 6 113 C 6 113 6420 0.110 0.050 REMARK 3 3 A 5 110 D 5 110 6060 0.130 0.050 REMARK 3 4 B 6 110 C 6 110 6096 0.130 0.050 REMARK 3 5 B 5 111 D 5 111 6376 0.100 0.050 REMARK 3 6 C 6 110 D 6 110 6118 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -36.3520 -14.7820 13.4420 REMARK 3 T TENSOR REMARK 3 T11: 0.4453 T22: 0.1292 REMARK 3 T33: 0.1205 T12: -0.0394 REMARK 3 T13: 0.1472 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.0756 L22: 6.5468 REMARK 3 L33: 2.7969 L12: -0.4330 REMARK 3 L13: -0.0298 L23: 1.7609 REMARK 3 S TENSOR REMARK 3 S11: -0.1541 S12: -0.3549 S13: -0.0133 REMARK 3 S21: 0.3885 S22: 0.1904 S23: 0.5661 REMARK 3 S31: 0.2051 S32: -0.1413 S33: -0.0363 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0900 2.8040 3.7040 REMARK 3 T TENSOR REMARK 3 T11: 0.5469 T22: 0.0244 REMARK 3 T33: 0.0563 T12: 0.0197 REMARK 3 T13: 0.1375 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 5.2128 L22: 3.9245 REMARK 3 L33: 1.7421 L12: 1.8001 REMARK 3 L13: -0.2474 L23: 0.5230 REMARK 3 S TENSOR REMARK 3 S11: -0.1427 S12: -0.1433 S13: 0.2096 REMARK 3 S21: -0.0578 S22: 0.1996 S23: 0.1335 REMARK 3 S31: 0.2250 S32: 0.0175 S33: -0.0569 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 114 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9900 -16.4010 -12.8510 REMARK 3 T TENSOR REMARK 3 T11: 0.7558 T22: 0.2334 REMARK 3 T33: 0.0401 T12: -0.1174 REMARK 3 T13: 0.1474 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.5073 L22: 6.8005 REMARK 3 L33: 2.6252 L12: 0.6143 REMARK 3 L13: -0.2234 L23: 1.1620 REMARK 3 S TENSOR REMARK 3 S11: -0.0728 S12: 0.5291 S13: 0.1366 REMARK 3 S21: -0.9764 S22: 0.0465 S23: -0.1369 REMARK 3 S31: -0.0625 S32: -0.0156 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 111 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9640 -33.2210 10.5200 REMARK 3 T TENSOR REMARK 3 T11: 0.7140 T22: 0.0935 REMARK 3 T33: 0.1884 T12: -0.0294 REMARK 3 T13: 0.1301 T23: -0.0988 REMARK 3 L TENSOR REMARK 3 L11: 3.6998 L22: 3.1194 REMARK 3 L33: 3.1526 L12: -1.7585 REMARK 3 L13: 0.9838 L23: -1.0398 REMARK 3 S TENSOR REMARK 3 S11: -0.2507 S12: -0.0678 S13: -0.0464 REMARK 3 S21: 0.1130 S22: 0.3559 S23: -0.4093 REMARK 3 S31: 0.2169 S32: 0.2313 S33: -0.1052 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6HQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13884 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 36.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.90100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: FULL LENGTH PROTEIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M K NITRATE PH 6.9 2.5MM CAMP 20% REMARK 280 W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.29000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.29000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 60.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 4 REMARK 465 LYS B 112 REMARK 465 ASN B 113 REMARK 465 ILE B 114 REMARK 465 ALA C 4 REMARK 465 ALA C 5 REMARK 465 ALA D 4 REMARK 465 LYS D 112 REMARK 465 ASN D 113 REMARK 465 ILE D 114 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG D 33 O LEU D 74 2556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP D 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HQ2 RELATED DB: PDB REMARK 900 APO FORM DBREF 6HQ3 A 4 114 UNP Q6MLN6 Q6MLN6_BDEBA 4 114 DBREF 6HQ3 B 4 114 UNP Q6MLN6 Q6MLN6_BDEBA 4 114 DBREF 6HQ3 C 4 114 UNP Q6MLN6 Q6MLN6_BDEBA 4 114 DBREF 6HQ3 D 4 114 UNP Q6MLN6 Q6MLN6_BDEBA 4 114 SEQRES 1 A 111 ALA ALA GLN SER VAL ASP ILE HIS LYS ASP GLN ILE ILE SEQRES 2 A 111 PHE SER GLU GLY ASP ALA GLY ASP CYS ALA TYR ILE ILE SEQRES 3 A 111 GLU LYS GLY ARG VAL LEU ILE TYR LEU THR LYS ASP LYS SEQRES 4 A 111 GLU GLU ILE PRO LEU THR ILE LEU GLY GLU GLY GLU ILE SEQRES 5 A 111 PHE GLY GLU MET ALA LEU ILE ASP ASN GLN ASN ARG SER SEQRES 6 A 111 ALA SER VAL ARG ALA LEU GLU ASP VAL ARG LEU ALA ILE SEQRES 7 A 111 VAL THR LYS GLN GLN VAL LEU GLU ARG VAL SER THR ALA SEQRES 8 A 111 ASP LYS VAL VAL GLN LEU LEU MET ARG VAL LEU LEU LYS SEQRES 9 A 111 ARG LEU ARG ARG LYS ASN ILE SEQRES 1 B 111 ALA ALA GLN SER VAL ASP ILE HIS LYS ASP GLN ILE ILE SEQRES 2 B 111 PHE SER GLU GLY ASP ALA GLY ASP CYS ALA TYR ILE ILE SEQRES 3 B 111 GLU LYS GLY ARG VAL LEU ILE TYR LEU THR LYS ASP LYS SEQRES 4 B 111 GLU GLU ILE PRO LEU THR ILE LEU GLY GLU GLY GLU ILE SEQRES 5 B 111 PHE GLY GLU MET ALA LEU ILE ASP ASN GLN ASN ARG SER SEQRES 6 B 111 ALA SER VAL ARG ALA LEU GLU ASP VAL ARG LEU ALA ILE SEQRES 7 B 111 VAL THR LYS GLN GLN VAL LEU GLU ARG VAL SER THR ALA SEQRES 8 B 111 ASP LYS VAL VAL GLN LEU LEU MET ARG VAL LEU LEU LYS SEQRES 9 B 111 ARG LEU ARG ARG LYS ASN ILE SEQRES 1 C 111 ALA ALA GLN SER VAL ASP ILE HIS LYS ASP GLN ILE ILE SEQRES 2 C 111 PHE SER GLU GLY ASP ALA GLY ASP CYS ALA TYR ILE ILE SEQRES 3 C 111 GLU LYS GLY ARG VAL LEU ILE TYR LEU THR LYS ASP LYS SEQRES 4 C 111 GLU GLU ILE PRO LEU THR ILE LEU GLY GLU GLY GLU ILE SEQRES 5 C 111 PHE GLY GLU MET ALA LEU ILE ASP ASN GLN ASN ARG SER SEQRES 6 C 111 ALA SER VAL ARG ALA LEU GLU ASP VAL ARG LEU ALA ILE SEQRES 7 C 111 VAL THR LYS GLN GLN VAL LEU GLU ARG VAL SER THR ALA SEQRES 8 C 111 ASP LYS VAL VAL GLN LEU LEU MET ARG VAL LEU LEU LYS SEQRES 9 C 111 ARG LEU ARG ARG LYS ASN ILE SEQRES 1 D 111 ALA ALA GLN SER VAL ASP ILE HIS LYS ASP GLN ILE ILE SEQRES 2 D 111 PHE SER GLU GLY ASP ALA GLY ASP CYS ALA TYR ILE ILE SEQRES 3 D 111 GLU LYS GLY ARG VAL LEU ILE TYR LEU THR LYS ASP LYS SEQRES 4 D 111 GLU GLU ILE PRO LEU THR ILE LEU GLY GLU GLY GLU ILE SEQRES 5 D 111 PHE GLY GLU MET ALA LEU ILE ASP ASN GLN ASN ARG SER SEQRES 6 D 111 ALA SER VAL ARG ALA LEU GLU ASP VAL ARG LEU ALA ILE SEQRES 7 D 111 VAL THR LYS GLN GLN VAL LEU GLU ARG VAL SER THR ALA SEQRES 8 D 111 ASP LYS VAL VAL GLN LEU LEU MET ARG VAL LEU LEU LYS SEQRES 9 D 111 ARG LEU ARG ARG LYS ASN ILE HET CMP B 901 22 HET CMP D 901 22 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 5 CMP 2(C10 H12 N5 O6 P) HELIX 1 AA1 GLY A 57 ASN A 64 1 8 HELIX 2 AA2 LYS A 84 THR A 93 1 10 HELIX 3 AA3 ASP A 95 ILE A 114 1 20 HELIX 4 AA4 GLU B 58 ASP B 63 1 6 HELIX 5 AA5 LYS B 84 THR B 93 1 10 HELIX 6 AA6 ASP B 95 ARG B 111 1 17 HELIX 7 AA7 GLY C 57 ASN C 64 1 8 HELIX 8 AA8 LYS C 84 THR C 93 1 10 HELIX 9 AA9 ASP C 95 ILE C 114 1 20 HELIX 10 AB1 GLU D 58 ASP D 63 1 6 HELIX 11 AB2 LYS D 84 THR D 93 1 10 HELIX 12 AB3 ASP D 95 ARG D 111 1 17 SHEET 1 AA1 4 SER A 7 ILE A 10 0 SHEET 2 AA1 4 VAL A 77 THR A 83 -1 O VAL A 77 N ILE A 10 SHEET 3 AA1 4 CYS A 25 LYS A 31 -1 N ILE A 28 O ALA A 80 SHEET 4 AA1 4 ILE A 55 PHE A 56 -1 O PHE A 56 N TYR A 27 SHEET 1 AA2 4 ILE A 15 PHE A 17 0 SHEET 2 AA2 4 SER A 70 ALA A 73 -1 O VAL A 71 N PHE A 17 SHEET 3 AA2 4 VAL A 34 LYS A 40 -1 N TYR A 37 O SER A 70 SHEET 4 AA2 4 GLU A 43 LEU A 50 -1 O ILE A 45 N LEU A 38 SHEET 1 AA3 4 SER B 7 ILE B 10 0 SHEET 2 AA3 4 VAL B 77 THR B 83 -1 O VAL B 77 N ILE B 10 SHEET 3 AA3 4 CYS B 25 LYS B 31 -1 N ILE B 28 O ALA B 80 SHEET 4 AA3 4 ILE B 55 PHE B 56 -1 O PHE B 56 N TYR B 27 SHEET 1 AA4 4 ILE B 15 PHE B 17 0 SHEET 2 AA4 4 SER B 70 ALA B 73 -1 O VAL B 71 N PHE B 17 SHEET 3 AA4 4 VAL B 34 LYS B 40 -1 N TYR B 37 O SER B 70 SHEET 4 AA4 4 GLU B 43 LEU B 50 -1 O ILE B 45 N LEU B 38 SHEET 1 AA5 4 SER C 7 ILE C 10 0 SHEET 2 AA5 4 VAL C 77 THR C 83 -1 O VAL C 77 N ILE C 10 SHEET 3 AA5 4 CYS C 25 LYS C 31 -1 N ILE C 28 O ALA C 80 SHEET 4 AA5 4 ILE C 55 PHE C 56 -1 O PHE C 56 N TYR C 27 SHEET 1 AA6 4 ILE C 15 PHE C 17 0 SHEET 2 AA6 4 SER C 70 ALA C 73 -1 O VAL C 71 N PHE C 17 SHEET 3 AA6 4 VAL C 34 LYS C 40 -1 N TYR C 37 O SER C 70 SHEET 4 AA6 4 GLU C 43 LEU C 50 -1 O ILE C 45 N LEU C 38 SHEET 1 AA7 4 SER D 7 ILE D 10 0 SHEET 2 AA7 4 VAL D 77 THR D 83 -1 O VAL D 77 N ILE D 10 SHEET 3 AA7 4 CYS D 25 LYS D 31 -1 N ILE D 28 O ALA D 80 SHEET 4 AA7 4 ILE D 55 PHE D 56 -1 O PHE D 56 N TYR D 27 SHEET 1 AA8 4 ILE D 15 PHE D 17 0 SHEET 2 AA8 4 SER D 70 ALA D 73 -1 O VAL D 71 N PHE D 17 SHEET 3 AA8 4 VAL D 34 LYS D 40 -1 N TYR D 37 O SER D 70 SHEET 4 AA8 4 GLU D 43 LEU D 50 -1 O ILE D 45 N LEU D 38 SITE 1 AC1 10 PHE B 17 GLY B 57 GLU B 58 MET B 59 SITE 2 AC1 10 ALA B 60 ARG B 67 SER B 68 ALA B 69 SITE 3 AC1 10 ARG C 108 ARG C 111 SITE 1 AC2 11 ARG A 108 ARG A 111 PHE D 17 PHE D 56 SITE 2 AC2 11 GLY D 57 GLU D 58 MET D 59 ALA D 60 SITE 3 AC2 11 ARG D 67 SER D 68 ALA D 69 CRYST1 94.580 120.750 56.300 90.00 116.80 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010573 0.000000 0.005341 0.00000 SCALE2 0.000000 0.008282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019899 0.00000