HEADER SIGNALING PROTEIN 24-SEP-18 6HQ4 TITLE STRUCTURE OF EAL ENZYME BD1971 - CAMP BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: EAL ENZYME BD1971; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS (STRAIN ATCC 15356 / SOURCE 3 DSM 50701 / NCIB 9529 / HD100); SOURCE 4 ORGANISM_TAXID: 264462; SOURCE 5 GENE: BD1971; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EAL, CYCLIC-DI-GMP, CAMP, BDELLOVIBRIO, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.LOVERING,I.T.CADBY REVDAT 4 01-MAY-24 6HQ4 1 REMARK REVDAT 3 11-SEP-19 6HQ4 1 JRNL REVDAT 2 14-AUG-19 6HQ4 1 JRNL REVDAT 1 31-JUL-19 6HQ4 0 JRNL AUTH I.T.CADBY,S.M.BASFORD,R.NOTTINGHAM,R.MEEK,R.LOWRY,C.LAMBERT, JRNL AUTH 2 M.TRIDGETT,R.TILL,R.AHMAD,R.FUNG,L.HOBLEY,W.S.HUGHES, JRNL AUTH 3 P.J.MOYNIHAN,R.E.SOCKETT,A.L.LOVERING JRNL TITL NUCLEOTIDE SIGNALING PATHWAY CONVERGENCE IN A CAMP-SENSING JRNL TITL 2 BACTERIAL C-DI-GMP PHOSPHODIESTERASE. JRNL REF EMBO J. V. 38 00772 2019 JRNL REFN ESSN 1460-2075 JRNL PMID 31355487 JRNL DOI 10.15252/EMBJ.2018100772 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1483 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -3.16000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.776 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.365 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.045 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6060 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6021 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8167 ; 1.075 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13829 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 738 ; 5.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 284 ;37.163 ;24.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1168 ;14.903 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.465 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 943 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6747 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1362 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 401 B 6 401 20808 0.150 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): -52.3010 -35.4990 -18.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.0550 T22: 0.0053 REMARK 3 T33: 0.7116 T12: 0.0041 REMARK 3 T13: -0.0324 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 1.8734 L22: 0.7077 REMARK 3 L33: 1.4323 L12: -0.7531 REMARK 3 L13: -1.3716 L23: 0.9610 REMARK 3 S TENSOR REMARK 3 S11: 0.1849 S12: -0.0313 S13: 0.1131 REMARK 3 S21: 0.0344 S22: 0.0454 S23: -0.0958 REMARK 3 S31: -0.0223 S32: 0.0601 S33: -0.2303 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): -53.5290 -14.8110 -15.8230 REMARK 3 T TENSOR REMARK 3 T11: 0.0503 T22: 0.0814 REMARK 3 T33: 0.6609 T12: -0.0205 REMARK 3 T13: 0.0300 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 2.8368 L22: 1.5873 REMARK 3 L33: 0.3108 L12: 1.1661 REMARK 3 L13: -0.2725 L23: 0.0990 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: 0.1316 S13: 0.1782 REMARK 3 S21: -0.1020 S22: -0.0476 S23: 0.5190 REMARK 3 S31: 0.0179 S32: -0.1548 S33: 0.0141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6HQ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29505 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 65.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.92600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: USING FULL LENGTH MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MG FORMATE PH 5.7 20% W/V PEG REMARK 280 3350 2.5MM CAMP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.77333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.54667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 116 REMARK 465 PRO A 117 REMARK 465 GLY A 118 REMARK 465 GLY A 119 REMARK 465 SER A 120 REMARK 465 ARG A 121 REMARK 465 ILE A 122 REMARK 465 SER A 123 REMARK 465 GLU A 124 REMARK 465 VAL A 125 REMARK 465 GLU A 126 REMARK 465 PHE A 127 REMARK 465 ASP A 128 REMARK 465 ASN A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 ALA A 132 REMARK 465 GLY A 133 REMARK 465 ASP A 134 REMARK 465 ASP A 135 REMARK 465 GLY A 136 REMARK 465 THR A 137 REMARK 465 GLN A 138 REMARK 465 ARG B 111 REMARK 465 LYS B 112 REMARK 465 ASN B 113 REMARK 465 ILE B 114 REMARK 465 GLY B 115 REMARK 465 GLY B 116 REMARK 465 PRO B 117 REMARK 465 GLY B 118 REMARK 465 GLY B 119 REMARK 465 SER B 120 REMARK 465 ARG B 121 REMARK 465 ILE B 122 REMARK 465 SER B 123 REMARK 465 GLU B 124 REMARK 465 VAL B 125 REMARK 465 GLU B 126 REMARK 465 PHE B 127 REMARK 465 ASP B 128 REMARK 465 ASN B 129 REMARK 465 SER B 130 REMARK 465 GLY B 131 REMARK 465 ALA B 132 REMARK 465 GLY B 133 REMARK 465 ASP B 134 REMARK 465 ASP B 135 REMARK 465 GLY B 136 REMARK 465 THR B 137 REMARK 465 GLN B 138 REMARK 465 LEU B 402 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 172 19.92 59.56 REMARK 500 VAL A 191 -32.44 65.65 REMARK 500 ASN A 202 48.89 -99.47 REMARK 500 LYS A 233 59.64 -105.43 REMARK 500 ASN B 202 49.99 -101.54 REMARK 500 LYS B 233 59.60 -106.24 REMARK 500 SER B 388 141.43 -170.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 178 OE2 REMARK 620 2 ASN A 245 OD1 85.0 REMARK 620 3 GLU A 277 OE1 74.5 67.4 REMARK 620 4 ASP A 306 OD2 158.0 83.1 83.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 178 OE2 REMARK 620 2 ASN B 245 OD1 82.5 REMARK 620 3 GLU B 277 OE1 66.3 61.3 REMARK 620 4 ASP B 306 OD2 137.5 79.9 71.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HQ2 RELATED DB: PDB REMARK 900 APO FORM REMARK 900 RELATED ID: 6HQ3 RELATED DB: PDB REMARK 900 HALF-OCCUPIED DBREF 6HQ4 A 6 400 UNP Q6MLN6 Q6MLN6_BDEBA 6 400 DBREF 6HQ4 B 6 400 UNP Q6MLN6 Q6MLN6_BDEBA 6 400 SEQADV 6HQ4 LYS A 401 UNP Q6MLN6 EXPRESSION TAG SEQADV 6HQ4 LEU A 402 UNP Q6MLN6 EXPRESSION TAG SEQADV 6HQ4 LYS B 401 UNP Q6MLN6 EXPRESSION TAG SEQADV 6HQ4 LEU B 402 UNP Q6MLN6 EXPRESSION TAG SEQRES 1 A 397 GLN SER VAL ASP ILE HIS LYS ASP GLN ILE ILE PHE SER SEQRES 2 A 397 GLU GLY ASP ALA GLY ASP CYS ALA TYR ILE ILE GLU LYS SEQRES 3 A 397 GLY ARG VAL LEU ILE TYR LEU THR LYS ASP LYS GLU GLU SEQRES 4 A 397 ILE PRO LEU THR ILE LEU GLY GLU GLY GLU ILE PHE GLY SEQRES 5 A 397 GLU MET ALA LEU ILE ASP ASN GLN ASN ARG SER ALA SER SEQRES 6 A 397 VAL ARG ALA LEU GLU ASP VAL ARG LEU ALA ILE VAL THR SEQRES 7 A 397 LYS GLN GLN VAL LEU GLU ARG VAL SER THR ALA ASP LYS SEQRES 8 A 397 VAL VAL GLN LEU LEU MET ARG VAL LEU LEU LYS ARG LEU SEQRES 9 A 397 ARG ARG LYS ASN ILE GLY GLY PRO GLY GLY SER ARG ILE SEQRES 10 A 397 SER GLU VAL GLU PHE ASP ASN SER GLY ALA GLY ASP ASP SEQRES 11 A 397 GLY THR GLN SER ALA LEU ASP GLN ILE LYS LEU GLU ASN SEQRES 12 A 397 GLN ILE PHE GLN ALA PHE GLN ASN LYS GLU PHE GLU LEU SEQRES 13 A 397 PHE TYR GLN PRO ILE VAL ASN LEU LYS ASN LYS THR ILE SEQRES 14 A 397 THR GLY CYS GLU ALA LEU LEU ARG TRP ASN SER PRO GLN SEQRES 15 A 397 HIS GLY LEU VAL SER PRO ASN LEU PHE ILE ASP ILE ILE SEQRES 16 A 397 GLU ASN SER SER MET VAL ILE PRO ILE GLY HIS TRP ILE SEQRES 17 A 397 ILE ASN GLN ALA LEU LYS ASP LEU ARG THR ILE GLN ASP SEQRES 18 A 397 GLN LEU ARG LEU ASN LYS LYS GLU ARG MET ALA ASP ASP SEQRES 19 A 397 PHE MET MET SER ILE ASN ILE SER GLY ARG GLN PHE THR SEQRES 20 A 397 HIS SER ASP PHE VAL ASN ASN LEU GLU ASP LEU ARG GLU SEQRES 21 A 397 LYS HIS ASP LEU HIS THR GLN ASN ILE LYS LEU GLU MET SEQRES 22 A 397 THR GLU ARG ILE MET MET ASP GLY ALA ILE ALA ILE ASP SEQRES 23 A 397 ALA LEU ASN GLN CYS ARG SER LEU GLY TYR ALA ILE SER SEQRES 24 A 397 ILE ASP ASP PHE GLY THR GLY PHE SER GLY LEU GLN TYR SEQRES 25 A 397 LEU THR GLN MET PRO ILE SER PHE LEU LYS ILE ASP ARG SEQRES 26 A 397 SER PHE VAL MET LYS ILE LEU SER ASP PRO LYS SER LYS SEQRES 27 A 397 ALA VAL VAL SER SER ILE ILE HIS LEU ALA HIS ALA MET SEQRES 28 A 397 ASP ILE GLU VAL ILE ALA GLU GLY ILE GLU HIS HIS GLU SEQRES 29 A 397 GLU ALA LEU VAL LEU GLU THR LEU GLY ALA ARG PHE GLY SEQRES 30 A 397 GLN GLY TYR LEU PHE SER LYS PRO VAL ASP LEU GLY ARG SEQRES 31 A 397 PHE LEU LYS LEU ILE LYS LEU SEQRES 1 B 397 GLN SER VAL ASP ILE HIS LYS ASP GLN ILE ILE PHE SER SEQRES 2 B 397 GLU GLY ASP ALA GLY ASP CYS ALA TYR ILE ILE GLU LYS SEQRES 3 B 397 GLY ARG VAL LEU ILE TYR LEU THR LYS ASP LYS GLU GLU SEQRES 4 B 397 ILE PRO LEU THR ILE LEU GLY GLU GLY GLU ILE PHE GLY SEQRES 5 B 397 GLU MET ALA LEU ILE ASP ASN GLN ASN ARG SER ALA SER SEQRES 6 B 397 VAL ARG ALA LEU GLU ASP VAL ARG LEU ALA ILE VAL THR SEQRES 7 B 397 LYS GLN GLN VAL LEU GLU ARG VAL SER THR ALA ASP LYS SEQRES 8 B 397 VAL VAL GLN LEU LEU MET ARG VAL LEU LEU LYS ARG LEU SEQRES 9 B 397 ARG ARG LYS ASN ILE GLY GLY PRO GLY GLY SER ARG ILE SEQRES 10 B 397 SER GLU VAL GLU PHE ASP ASN SER GLY ALA GLY ASP ASP SEQRES 11 B 397 GLY THR GLN SER ALA LEU ASP GLN ILE LYS LEU GLU ASN SEQRES 12 B 397 GLN ILE PHE GLN ALA PHE GLN ASN LYS GLU PHE GLU LEU SEQRES 13 B 397 PHE TYR GLN PRO ILE VAL ASN LEU LYS ASN LYS THR ILE SEQRES 14 B 397 THR GLY CYS GLU ALA LEU LEU ARG TRP ASN SER PRO GLN SEQRES 15 B 397 HIS GLY LEU VAL SER PRO ASN LEU PHE ILE ASP ILE ILE SEQRES 16 B 397 GLU ASN SER SER MET VAL ILE PRO ILE GLY HIS TRP ILE SEQRES 17 B 397 ILE ASN GLN ALA LEU LYS ASP LEU ARG THR ILE GLN ASP SEQRES 18 B 397 GLN LEU ARG LEU ASN LYS LYS GLU ARG MET ALA ASP ASP SEQRES 19 B 397 PHE MET MET SER ILE ASN ILE SER GLY ARG GLN PHE THR SEQRES 20 B 397 HIS SER ASP PHE VAL ASN ASN LEU GLU ASP LEU ARG GLU SEQRES 21 B 397 LYS HIS ASP LEU HIS THR GLN ASN ILE LYS LEU GLU MET SEQRES 22 B 397 THR GLU ARG ILE MET MET ASP GLY ALA ILE ALA ILE ASP SEQRES 23 B 397 ALA LEU ASN GLN CYS ARG SER LEU GLY TYR ALA ILE SER SEQRES 24 B 397 ILE ASP ASP PHE GLY THR GLY PHE SER GLY LEU GLN TYR SEQRES 25 B 397 LEU THR GLN MET PRO ILE SER PHE LEU LYS ILE ASP ARG SEQRES 26 B 397 SER PHE VAL MET LYS ILE LEU SER ASP PRO LYS SER LYS SEQRES 27 B 397 ALA VAL VAL SER SER ILE ILE HIS LEU ALA HIS ALA MET SEQRES 28 B 397 ASP ILE GLU VAL ILE ALA GLU GLY ILE GLU HIS HIS GLU SEQRES 29 B 397 GLU ALA LEU VAL LEU GLU THR LEU GLY ALA ARG PHE GLY SEQRES 30 B 397 GLN GLY TYR LEU PHE SER LYS PRO VAL ASP LEU GLY ARG SEQRES 31 B 397 PHE LEU LYS LEU ILE LYS LEU HET CMP A 901 22 HET MG A 902 1 HET CMP B 901 22 HET MG B 902 1 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN CMP CYCLIC AMP; CAMP FORMUL 3 CMP 2(C10 H12 N5 O6 P) FORMUL 4 MG 2(MG 2+) HELIX 1 AA1 GLU A 58 ASN A 64 1 7 HELIX 2 AA2 LYS A 84 ALA A 94 1 11 HELIX 3 AA3 ASP A 95 GLY A 115 1 21 HELIX 4 AA4 ALA A 140 ASN A 156 1 17 HELIX 5 AA5 ASN A 194 ASN A 202 1 9 HELIX 6 AA6 MET A 205 ASN A 231 1 27 HELIX 7 AA7 LYS A 233 PHE A 240 1 8 HELIX 8 AA8 SER A 247 HIS A 253 1 7 HELIX 9 AA9 ASP A 255 HIS A 267 1 13 HELIX 10 AB1 HIS A 270 GLN A 272 5 3 HELIX 11 AB2 THR A 279 ASP A 285 5 7 HELIX 12 AB3 ASP A 291 LEU A 299 1 9 HELIX 13 AB4 GLY A 314 THR A 319 1 6 HELIX 14 AB5 ASP A 329 MET A 334 1 6 HELIX 15 AB6 ASP A 339 ALA A 355 1 17 HELIX 16 AB7 HIS A 367 GLY A 378 1 12 HELIX 17 AB8 GLY A 394 LYS A 401 1 8 HELIX 18 AB9 GLU B 58 ASN B 64 1 7 HELIX 19 AC1 LYS B 84 ALA B 94 1 11 HELIX 20 AC2 ASP B 95 ARG B 110 1 16 HELIX 21 AC3 ALA B 140 ASN B 156 1 17 HELIX 22 AC4 SER B 192 ASN B 202 1 11 HELIX 23 AC5 MET B 205 ASN B 231 1 27 HELIX 24 AC6 LYS B 233 PHE B 240 1 8 HELIX 25 AC7 SER B 247 HIS B 253 1 7 HELIX 26 AC8 ASP B 255 HIS B 267 1 13 HELIX 27 AC9 HIS B 270 GLN B 272 5 3 HELIX 28 AD1 THR B 279 ASP B 285 5 7 HELIX 29 AD2 ASP B 291 LEU B 299 1 9 HELIX 30 AD3 SER B 313 MET B 321 1 9 HELIX 31 AD4 ASP B 329 MET B 334 1 6 HELIX 32 AD5 ASP B 339 ALA B 355 1 17 HELIX 33 AD6 HIS B 367 GLY B 378 1 12 HELIX 34 AD7 ASP B 392 LYS B 401 1 10 SHEET 1 AA1 4 SER A 7 ILE A 10 0 SHEET 2 AA1 4 VAL A 77 THR A 83 -1 O LEU A 79 N VAL A 8 SHEET 3 AA1 4 CYS A 25 LYS A 31 -1 N ALA A 26 O VAL A 82 SHEET 4 AA1 4 ILE A 55 PHE A 56 -1 O PHE A 56 N TYR A 27 SHEET 1 AA2 4 ILE A 15 PHE A 17 0 SHEET 2 AA2 4 SER A 70 ALA A 73 -1 O VAL A 71 N PHE A 17 SHEET 3 AA2 4 VAL A 34 LYS A 40 -1 N TYR A 37 O SER A 70 SHEET 4 AA2 4 GLU A 43 LEU A 50 -1 O LEU A 47 N ILE A 36 SHEET 1 AA3 9 PHE A 159 ASN A 168 0 SHEET 2 AA3 9 ILE A 174 TRP A 183 -1 O LEU A 180 N PHE A 162 SHEET 3 AA3 9 MET A 241 ASN A 245 1 O SER A 243 N CYS A 177 SHEET 4 AA3 9 ILE A 274 MET A 278 1 O GLU A 277 N ILE A 244 SHEET 5 AA3 9 ALA A 302 PHE A 308 1 O ASP A 306 N MET A 278 SHEET 6 AA3 9 PHE A 325 ILE A 328 1 O LYS A 327 N ILE A 305 SHEET 7 AA3 9 GLU A 359 GLU A 363 1 O GLU A 363 N ILE A 328 SHEET 8 AA3 9 PHE A 381 GLN A 383 1 O GLN A 383 N ALA A 362 SHEET 9 AA3 9 PHE A 159 ASN A 168 -1 N VAL A 167 O GLY A 382 SHEET 1 AA4 2 PHE A 312 SER A 313 0 SHEET 2 AA4 2 GLY B 311 PHE B 312 -1 O GLY B 311 N SER A 313 SHEET 1 AA5 4 SER B 7 ILE B 10 0 SHEET 2 AA5 4 VAL B 77 THR B 83 -1 O LEU B 79 N VAL B 8 SHEET 3 AA5 4 CYS B 25 LYS B 31 -1 N ALA B 26 O VAL B 82 SHEET 4 AA5 4 ILE B 55 PHE B 56 -1 O PHE B 56 N TYR B 27 SHEET 1 AA6 4 ILE B 15 PHE B 17 0 SHEET 2 AA6 4 SER B 70 ALA B 73 -1 O VAL B 71 N PHE B 17 SHEET 3 AA6 4 VAL B 34 LYS B 40 -1 N LEU B 35 O ARG B 72 SHEET 4 AA6 4 GLU B 43 LEU B 50 -1 O LEU B 47 N ILE B 36 SHEET 1 AA7 9 PHE B 159 ASN B 168 0 SHEET 2 AA7 9 ILE B 174 TRP B 183 -1 O LEU B 180 N PHE B 162 SHEET 3 AA7 9 MET B 241 ASN B 245 1 O SER B 243 N CYS B 177 SHEET 4 AA7 9 ILE B 274 MET B 278 1 O GLU B 277 N ILE B 244 SHEET 5 AA7 9 ALA B 302 PHE B 308 1 O ASP B 306 N MET B 278 SHEET 6 AA7 9 PHE B 325 ILE B 328 1 O LYS B 327 N ILE B 305 SHEET 7 AA7 9 GLU B 359 GLU B 363 1 O GLU B 363 N ILE B 328 SHEET 8 AA7 9 PHE B 381 GLN B 383 1 O GLN B 383 N ALA B 362 SHEET 9 AA7 9 PHE B 159 ASN B 168 -1 N VAL B 167 O GLY B 382 LINK OE2 GLU A 178 MG MG A 902 1555 1555 2.33 LINK OD1 ASN A 245 MG MG A 902 1555 1555 2.54 LINK OE1 GLU A 277 MG MG A 902 1555 1555 2.37 LINK OD2 ASP A 306 MG MG A 902 1555 1555 1.98 LINK OE2 GLU B 178 MG MG B 902 1555 1555 2.38 LINK OD1 ASN B 245 MG MG B 902 1555 1555 2.60 LINK OE1 GLU B 277 MG MG B 902 1555 1555 2.77 LINK OD2 ASP B 306 MG MG B 902 1555 1555 2.14 SITE 1 AC1 12 ILE A 36 THR A 48 PHE A 56 GLY A 57 SITE 2 AC1 12 GLU A 58 MET A 59 ALA A 60 ARG A 67 SITE 3 AC1 12 SER A 68 ALA A 69 ASN A 113 ARG B 108 SITE 1 AC2 4 GLU A 178 ASN A 245 GLU A 277 ASP A 306 SITE 1 AC3 11 ARG A 108 PHE B 17 THR B 48 PHE B 56 SITE 2 AC3 11 GLY B 57 GLU B 58 MET B 59 ALA B 60 SITE 3 AC3 11 ARG B 67 SER B 68 ALA B 69 SITE 1 AC4 4 GLU B 178 ASN B 245 GLU B 277 ASP B 306 CRYST1 82.380 82.380 131.320 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012139 0.007008 0.000000 0.00000 SCALE2 0.000000 0.014017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007615 0.00000