HEADER OXIDOREDUCTASE 25-SEP-18 6HQI TITLE HOLO-FORM OF POLYPHENOL OXIDASE FROM SOLANUM LYCOPERSICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPHENOL OXIDASE A, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_COMMON: TOMATO; SOURCE 4 ORGANISM_TAXID: 4081; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, POLYPHENOL OXIDASE, TYROSINASE EXPDTA X-RAY DIFFRACTION AUTHOR I.KAMPATSIKAS,A.BIJELIC,A.ROMPEL REVDAT 3 24-JAN-24 6HQI 1 REMARK REVDAT 2 15-JAN-20 6HQI 1 REMARK REVDAT 1 20-MAR-19 6HQI 0 JRNL AUTH I.KAMPATSIKAS,A.BIJELIC,A.ROMPEL JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF TOMATO JRNL TITL 2 POLYPHENOL OXIDASES PROVIDE NOVEL INSIGHTS INTO THEIR JRNL TITL 3 SUBSTRATE SPECIFICITY. JRNL REF SCI REP V. 9 4022 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 30858490 JRNL DOI 10.1038/S41598-019-39687-0 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2416 - 4.3486 1.00 2839 150 0.1777 0.2219 REMARK 3 2 4.3486 - 3.4521 1.00 2766 145 0.1547 0.1773 REMARK 3 3 3.4521 - 3.0159 1.00 2742 145 0.1745 0.2171 REMARK 3 4 3.0159 - 2.7402 1.00 2771 146 0.1871 0.2126 REMARK 3 5 2.7402 - 2.5438 1.00 2734 143 0.1867 0.2323 REMARK 3 6 2.5438 - 2.3938 1.00 2746 145 0.1931 0.2099 REMARK 3 7 2.3938 - 2.2740 1.00 2727 144 0.1882 0.2667 REMARK 3 8 2.2740 - 2.1750 1.00 2723 143 0.2080 0.2309 REMARK 3 9 2.1750 - 2.0913 1.00 2738 144 0.2146 0.2811 REMARK 3 10 2.0913 - 2.0191 1.00 2719 143 0.2346 0.3007 REMARK 3 11 2.0191 - 1.9560 1.00 2736 144 0.2683 0.3230 REMARK 3 12 1.9560 - 1.9000 1.00 2720 143 0.2954 0.3133 REMARK 3 13 1.9000 - 1.8500 1.00 2730 144 0.3228 0.3686 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3569 REMARK 3 ANGLE : 0.876 4844 REMARK 3 CHIRALITY : 0.080 513 REMARK 3 PLANARITY : 0.005 639 REMARK 3 DIHEDRAL : 12.738 2097 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8291 -0.6142 17.7543 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.2203 REMARK 3 T33: 0.1946 T12: -0.0309 REMARK 3 T13: 0.0134 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 1.7302 L22: 1.4186 REMARK 3 L33: 1.2890 L12: -0.3706 REMARK 3 L13: 0.0099 L23: 0.2780 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: -0.2375 S13: 0.2217 REMARK 3 S21: 0.1145 S22: -0.0135 S23: -0.0079 REMARK 3 S31: -0.0661 S32: -0.0452 S33: 0.0026 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5787 -10.1121 9.0977 REMARK 3 T TENSOR REMARK 3 T11: 0.2803 T22: 0.2154 REMARK 3 T33: 0.3327 T12: -0.0235 REMARK 3 T13: -0.0211 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.0861 L22: 0.8505 REMARK 3 L33: 0.9695 L12: 0.6055 REMARK 3 L13: -0.4535 L23: 0.6410 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: -0.0441 S13: 0.1279 REMARK 3 S21: -0.0330 S22: -0.0005 S23: -0.1594 REMARK 3 S31: -0.2483 S32: 0.1515 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3818 -10.1414 15.3372 REMARK 3 T TENSOR REMARK 3 T11: 0.2767 T22: 0.2173 REMARK 3 T33: 0.2638 T12: -0.0254 REMARK 3 T13: -0.0213 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 3.3937 L22: 0.4120 REMARK 3 L33: 0.4469 L12: -0.1823 REMARK 3 L13: -0.0361 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: -0.1331 S13: -0.1928 REMARK 3 S21: 0.0723 S22: 0.0349 S23: -0.1292 REMARK 3 S31: 0.0029 S32: 0.0880 S33: 0.0224 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 42.231 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CITRATE PH 6.6, 13% PEG REMARK 280 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.05000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 ILE A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 CYS A 11 REMARK 465 ASN A 12 REMARK 465 LYS A 13 REMARK 465 PRO A 14 REMARK 465 LYS A 15 REMARK 465 ILE A 16 REMARK 465 ASN A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 THR A 20 REMARK 465 GLU A 21 REMARK 465 VAL A 22 REMARK 465 PRO A 23 REMARK 465 TYR A 24 REMARK 465 PHE A 25 REMARK 465 CYS A 26 REMARK 465 CYS A 27 REMARK 465 ALA A 28 REMARK 465 PRO A 29 REMARK 465 LYS A 30 REMARK 465 PRO A 31 REMARK 465 ASP A 32 REMARK 465 ASP A 33 REMARK 465 MET A 34 REMARK 465 CYS A 97 REMARK 465 ASN A 98 REMARK 465 GLY A 99 REMARK 465 GLY A 100 REMARK 465 TYR A 101 REMARK 465 SER A 102 REMARK 465 ILE A 103 REMARK 465 ASP A 104 REMARK 465 GLY A 105 REMARK 465 LYS A 106 REMARK 465 VAL A 107 REMARK 465 LEU A 108 REMARK 465 TYR A 224 REMARK 465 THR A 225 REMARK 465 LEU A 226 REMARK 465 GLY A 227 REMARK 465 PRO A 448 REMARK 465 HIS A 449 REMARK 465 VAL A 450 REMARK 465 HIS A 451 REMARK 465 ARG A 452 REMARK 465 VAL A 453 REMARK 465 GLY A 454 REMARK 465 ASP A 455 REMARK 465 PRO A 456 REMARK 465 LYS A 457 REMARK 465 HIS A 458 REMARK 465 CYS A 506 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 44 OG REMARK 470 VAL A 45 CG1 CG2 REMARK 470 THR A 46 OG1 CG2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 ASN A 177 CG OD1 ND2 REMARK 470 GLN A 189 CG CD OE1 NE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 THR A 229 OG1 CG2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 255 CG1 CG2 REMARK 470 LEU A 256 CG CD1 CD2 REMARK 470 PRO A 257 CG CD REMARK 470 ASP A 258 CG OD1 OD2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 ILE A 261 CG1 CG2 CD1 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 LEU A 447 CG CD1 CD2 REMARK 470 ASP A 505 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 93 CU CU A 602 1.42 REMARK 500 O HOH A 791 O HOH A 888 1.82 REMARK 500 O HOH A 834 O HOH A 912 1.85 REMARK 500 O HOH A 702 O HOH A 740 1.97 REMARK 500 O HOH A 893 O HOH A 975 2.03 REMARK 500 O HOH A 877 O HOH A 961 2.08 REMARK 500 OD1 ASP A 474 O HOH A 701 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 970 O HOH A 989 1455 1.89 REMARK 500 O HOH A 933 O HOH A 941 2645 2.00 REMARK 500 O HOH A 898 O HOH A 938 1455 2.11 REMARK 500 O HOH A 969 O HOH A 984 2545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 251 CD ARG A 251 NE -0.247 REMARK 500 ARG A 251 NE ARG A 251 CZ -0.238 REMARK 500 ARG A 251 CZ ARG A 251 NH1 -0.221 REMARK 500 ARG A 251 CZ ARG A 251 NH2 -0.217 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 44 C - N - CA ANGL. DEV. = -16.4 DEGREES REMARK 500 LYS A 260 N - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 46 -129.74 -94.06 REMARK 500 HIS A 176 -159.22 -99.20 REMARK 500 VAL A 210 -73.98 -116.65 REMARK 500 ASN A 238 -71.73 -70.48 REMARK 500 ASP A 258 -120.97 66.40 REMARK 500 VAL A 426 -165.39 -128.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 992 DISTANCE = 7.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 120 NE2 100.4 REMARK 620 3 O A 603 O 119.5 120.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 241 NE2 REMARK 620 2 HIS A 245 NE2 113.4 REMARK 620 3 HIS A 283 NE2 111.4 131.4 REMARK 620 4 O A 603 O 102.7 114.9 71.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O A 603 DBREF 6HQI A 1 506 PDB 6HQI 6HQI 1 506 SEQRES 1 A 506 ALA PRO ILE PRO PRO PRO ASP LEU SER SER CYS ASN LYS SEQRES 2 A 506 PRO LYS ILE ASN ALA THR THR GLU VAL PRO TYR PHE CYS SEQRES 3 A 506 CYS ALA PRO LYS PRO ASP ASP MET SER LYS VAL PRO TYR SEQRES 4 A 506 TYR LYS PHE PRO SER VAL THR LYS LEU ARG ILE ARG PRO SEQRES 5 A 506 PRO ALA HIS ALA LEU ASP GLU ALA TYR ILE ALA LYS TYR SEQRES 6 A 506 ASN LEU ALA ILE SER ARG MET LYS ASP LEU ASP LYS THR SEQRES 7 A 506 GLN PRO ASP ASN PRO ILE GLY PHE LYS GLN GLN ALA ASN SEQRES 8 A 506 ILE HIS CYS ALA TYR CYS ASN GLY GLY TYR SER ILE ASP SEQRES 9 A 506 GLY LYS VAL LEU GLN VAL HIS ASN SER TRP LEU PHE PHE SEQRES 10 A 506 PRO PHE HIS ARG TRP TYR LEU TYR PHE TYR GLU ARG ILE SEQRES 11 A 506 LEU GLY SER LEU ILE ASP ASP PRO THR PHE GLY LEU PRO SEQRES 12 A 506 PHE TRP ASN TRP ASP HIS PRO LYS GLY MET ARG PHE PRO SEQRES 13 A 506 PRO MET PHE ASP VAL PRO GLY THR ALA LEU TYR ASP GLU SEQRES 14 A 506 ARG ARG GLY ASP GLN ILE HIS ASN GLY ASN PHE ILE ASP SEQRES 15 A 506 LEU GLY SER PHE GLY ASP GLN VAL GLU THR THR GLN LEU SEQRES 16 A 506 GLN LEU MET THR ASN ASN LEU THR LEU MET TYR ARG GLN SEQRES 17 A 506 LEU VAL THR ASN SER PRO CYS PRO LEU MET PHE PHE GLY SEQRES 18 A 506 GLY PRO TYR THR LEU GLY SER THR VAL GLU ALA ALA GLY SEQRES 19 A 506 THR VAL GLU ASN ILE PRO HIS SER PRO VAL HIS ILE TRP SEQRES 20 A 506 VAL GLY THR ARG ARG GLY SER VAL LEU PRO ASP GLY LYS SEQRES 21 A 506 ILE SER ASN GLY GLU ASP MET GLY ASN PHE TYR SER ALA SEQRES 22 A 506 GLY LEU ASP PRO LEU PHE TYR CYS HIS HIS SER ASN VAL SEQRES 23 A 506 ASP ARG MET TRP ASN GLU TRP LYS ALA THR GLY GLY LYS SEQRES 24 A 506 ARG THR ASP LEU GLN ASN LYS ASP TRP LEU ASN SER GLU SEQRES 25 A 506 PHE PHE PHE TYR ASP GLU ASN GLY ASN PRO PHE LYS VAL SEQRES 26 A 506 ARG VAL ARG ASP CYS LEU ASP THR LYS LYS MET GLY TYR SEQRES 27 A 506 ASP TYR GLN PRO THR ALA THR PRO TRP ARG ASN PHE LYS SEQRES 28 A 506 PRO LYS THR LYS ALA SER ALA GLY LYS VAL ASN THR GLY SEQRES 29 A 506 SER ILE PRO PRO GLU SER GLN VAL PHE PRO LEU ALA LYS SEQRES 30 A 506 LEU ASP LYS ALA ILE SER PHE SER ILE ASN ARG PRO ALA SEQRES 31 A 506 SER SER ARG THR GLN GLN GLU LYS ASN ALA GLN GLU GLU SEQRES 32 A 506 VAL LEU THR PHE ASN ALA ILE LYS TYR ASP ASN ARG ASP SEQRES 33 A 506 TYR ILE ARG PHE ASP VAL PHE LEU ASN VAL ASP ASN ASN SEQRES 34 A 506 VAL ASN ALA ASN GLU LEU ASP LYS ALA GLU PHE ALA GLY SEQRES 35 A 506 SER TYR THR SER LEU PRO HIS VAL HIS ARG VAL GLY ASP SEQRES 36 A 506 PRO LYS HIS THR ALA THR ALA THR LEU ARG LEU ALA ILE SEQRES 37 A 506 THR GLU LEU LEU GLU ASP ILE GLY LEU GLU ASP GLU ASP SEQRES 38 A 506 THR ILE ALA VAL THR LEU VAL PRO LYS LYS GLY ASP ILE SEQRES 39 A 506 SER ILE GLY GLY VAL GLU ILE LYS LEU ALA ASP CYS HET CU A 601 1 HET CU A 602 1 HET O A 603 1 HETNAM CU COPPER (II) ION HETNAM O OXYGEN ATOM FORMUL 2 CU 2(CU 2+) FORMUL 4 O O FORMUL 5 HOH *292(H2 O) HELIX 1 AA1 ASP A 58 GLN A 79 1 22 HELIX 2 AA2 GLY A 85 CYS A 94 1 10 HELIX 3 AA3 LEU A 115 ILE A 135 1 21 HELIX 4 AA4 HIS A 149 MET A 153 5 5 HELIX 5 AA5 PRO A 156 VAL A 161 5 6 HELIX 6 AA6 THR A 193 VAL A 210 1 18 HELIX 7 AA7 CYS A 215 GLY A 221 1 7 HELIX 8 AA8 GLY A 234 ILE A 239 1 6 HELIX 9 AA9 PRO A 240 GLY A 249 1 10 HELIX 10 AB1 SER A 272 ASP A 276 5 5 HELIX 11 AB2 PRO A 277 ALA A 295 1 19 HELIX 12 AB3 ASN A 305 ASN A 310 1 6 HELIX 13 AB4 ARG A 328 LEU A 331 5 4 HELIX 14 AB5 ASP A 332 MET A 336 5 5 HELIX 15 AB6 THR A 345 PHE A 350 5 6 HELIX 16 AB7 ASN A 362 ILE A 366 5 5 HELIX 17 AB8 PRO A 368 PHE A 373 1 6 HELIX 18 AB9 THR A 394 GLN A 401 1 8 HELIX 19 AC1 ILE A 468 GLY A 476 1 9 SHEET 1 AA1 2 ARG A 49 ARG A 51 0 SHEET 2 AA1 2 TYR A 338 TYR A 340 1 O ASP A 339 N ARG A 51 SHEET 1 AA2 4 VAL A 230 GLU A 231 0 SHEET 2 AA2 4 ALA A 460 ALA A 467 1 O THR A 461 N GLU A 231 SHEET 3 AA2 4 GLU A 402 TYR A 412 -1 N PHE A 407 O LEU A 464 SHEET 4 AA2 4 SER A 495 ALA A 504 -1 O GLY A 498 N ASN A 408 SHEET 1 AA3 2 GLU A 312 TYR A 316 0 SHEET 2 AA3 2 PRO A 322 ARG A 326 -1 O VAL A 325 N PHE A 313 SHEET 1 AA4 4 ILE A 382 ASN A 387 0 SHEET 2 AA4 4 THR A 482 LYS A 491 -1 O VAL A 485 N PHE A 384 SHEET 3 AA4 4 ILE A 418 LEU A 424 -1 N PHE A 423 O THR A 486 SHEET 4 AA4 4 PHE A 440 SER A 446 -1 O ALA A 441 N VAL A 422 LINK NE2 HIS A 111 CU CU A 602 1555 1555 2.11 LINK NE2 HIS A 120 CU CU A 602 1555 1555 2.28 LINK NE2 HIS A 241 CU CU A 601 1555 1555 1.80 LINK NE2 HIS A 245 CU CU A 601 1555 1555 2.00 LINK NE2 HIS A 283 CU CU A 601 1555 1555 2.43 LINK CU CU A 601 O O A 603 1555 1555 2.46 LINK CU CU A 602 O O A 603 1555 1555 1.83 CISPEP 1 ILE A 239 PRO A 240 0 7.55 CISPEP 2 GLU A 265 ASP A 266 0 -2.00 CISPEP 3 PHE A 373 PRO A 374 0 4.24 SITE 1 AC1 4 HIS A 241 HIS A 245 HIS A 283 O A 603 SITE 1 AC2 4 HIS A 93 HIS A 111 HIS A 120 O A 603 SITE 1 AC3 7 HIS A 93 HIS A 111 HIS A 120 HIS A 241 SITE 2 AC3 7 HIS A 283 CU A 601 CU A 602 CRYST1 60.620 54.100 69.820 90.00 104.60 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016496 0.000000 0.004296 0.00000 SCALE2 0.000000 0.018484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014800 0.00000