HEADER OXIDOREDUCTASE 25-SEP-18 6HQL TITLE CRYSTAL STRUCTURE OF GCOA F169H BOUND TO GUAIACOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS SP. ATCC 39116; SOURCE 3 ORGANISM_TAXID: 385957; SOURCE 4 GENE: AMETH_3834; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME, P450, LIGNIN., OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.B.MALLINSON,D.J.HINCHEN,M.D.ALLEN,C.W.JOHNSON,G.T.BECKHAM, AUTHOR 2 J.E.MCGEEHAN REVDAT 5 24-JAN-24 6HQL 1 REMARK REVDAT 4 30-MAR-22 6HQL 1 REMARK REVDAT 3 24-JUL-19 6HQL 1 JRNL REVDAT 2 10-JUL-19 6HQL 1 JRNL REVDAT 1 03-JUL-19 6HQL 0 JRNL AUTH M.M.MACHOVINA,S.J.B.MALLINSON,B.C.KNOTT,A.W.MEYERS, JRNL AUTH 2 M.GARCIA-BORRAS,L.BU,J.E.GADO,A.OLIVER,G.P.SCHMIDT, JRNL AUTH 3 D.J.HINCHEN,M.F.CROWLEY,C.W.JOHNSON,E.L.NEIDLE,C.M.PAYNE, JRNL AUTH 4 K.N.HOUK,G.T.BECKHAM,J.E.MCGEEHAN,J.L.DUBOIS JRNL TITL ENABLING MICROBIAL SYRINGOL CONVERSION THROUGH JRNL TITL 2 STRUCTURE-GUIDED PROTEIN ENGINEERING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 13970 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31235604 JRNL DOI 10.1073/PNAS.1820001116 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 93998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 4576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.0229 - 4.6282 1.00 3295 159 0.1894 0.2291 REMARK 3 2 4.6282 - 3.6739 1.00 3089 177 0.1396 0.1568 REMARK 3 3 3.6739 - 3.2096 1.00 3107 131 0.1444 0.1557 REMARK 3 4 3.2096 - 2.9161 1.00 3087 117 0.1658 0.2023 REMARK 3 5 2.9161 - 2.7071 1.00 3010 191 0.1751 0.2051 REMARK 3 6 2.7071 - 2.5475 1.00 2999 172 0.1747 0.1833 REMARK 3 7 2.5475 - 2.4200 1.00 3034 150 0.1619 0.1911 REMARK 3 8 2.4200 - 2.3146 1.00 3010 154 0.1531 0.1635 REMARK 3 9 2.3146 - 2.2255 1.00 3014 147 0.1502 0.1731 REMARK 3 10 2.2255 - 2.1487 1.00 2996 173 0.1409 0.1634 REMARK 3 11 2.1487 - 2.0815 1.00 2947 171 0.1441 0.1535 REMARK 3 12 2.0815 - 2.0220 1.00 2990 149 0.1496 0.1798 REMARK 3 13 2.0220 - 1.9688 1.00 2959 167 0.1563 0.1959 REMARK 3 14 1.9688 - 1.9208 0.99 2968 158 0.1615 0.2031 REMARK 3 15 1.9208 - 1.8771 1.00 3009 138 0.1748 0.1803 REMARK 3 16 1.8771 - 1.8371 0.99 2945 164 0.1757 0.2001 REMARK 3 17 1.8371 - 1.8004 0.99 2963 148 0.1791 0.2042 REMARK 3 18 1.8004 - 1.7664 1.00 2972 140 0.1912 0.2145 REMARK 3 19 1.7664 - 1.7349 0.99 2956 160 0.2099 0.2278 REMARK 3 20 1.7349 - 1.7055 0.99 2957 125 0.2091 0.2586 REMARK 3 21 1.7055 - 1.6779 0.99 2908 163 0.2388 0.2366 REMARK 3 22 1.6779 - 1.6521 0.99 2941 160 0.2393 0.2890 REMARK 3 23 1.6521 - 1.6278 0.99 2957 134 0.2450 0.2898 REMARK 3 24 1.6278 - 1.6049 0.98 2913 143 0.2566 0.2568 REMARK 3 25 1.6049 - 1.5832 0.98 2934 146 0.2797 0.3299 REMARK 3 26 1.5832 - 1.5626 0.98 2861 174 0.2895 0.3357 REMARK 3 27 1.5626 - 1.5431 0.98 2930 150 0.3010 0.3443 REMARK 3 28 1.5431 - 1.5245 0.98 2918 136 0.3028 0.3317 REMARK 3 29 1.5245 - 1.5068 0.98 2922 132 0.3158 0.3560 REMARK 3 30 1.5068 - 1.4899 0.95 2831 147 0.3340 0.3800 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3306 REMARK 3 ANGLE : 1.371 4532 REMARK 3 CHIRALITY : 0.108 477 REMARK 3 PLANARITY : 0.010 599 REMARK 3 DIHEDRAL : 5.691 1188 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 46.3956 77.9497 41.5313 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.1119 REMARK 3 T33: 0.1258 T12: 0.0056 REMARK 3 T13: -0.0010 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.5248 L22: 0.3653 REMARK 3 L33: 0.6499 L12: 0.0967 REMARK 3 L13: -0.0376 L23: 0.1094 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: -0.0295 S13: -0.0126 REMARK 3 S21: 0.0393 S22: 0.0202 S23: -0.0309 REMARK 3 S31: 0.0227 S32: 0.0676 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93998 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 60.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, HEPES, GUAIACOL., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.95250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.99300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.99300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.42875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.99300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.99300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.47625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.99300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.99300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.42875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.99300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.99300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.47625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.95250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 629 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1006 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 696 O HOH A 710 2.02 REMARK 500 O HOH A 1007 O HOH A 1012 2.04 REMARK 500 O HOH A 783 O HOH A 996 2.04 REMARK 500 O HOH A 782 O HOH A 1024 2.05 REMARK 500 O HOH A 860 O HOH A 919 2.08 REMARK 500 O HOH A 968 O HOH A 977 2.08 REMARK 500 O HOH A 620 O HOH A 879 2.11 REMARK 500 O HOH A 906 O HOH A 1015 2.12 REMARK 500 OE2 GLU A 64 O HOH A 601 2.13 REMARK 500 NH2 ARG A 280 O HOH A 602 2.13 REMARK 500 O HOH A 935 O HOH A 945 2.14 REMARK 500 O HOH A 984 O HOH A 1036 2.14 REMARK 500 O HOH A 969 O HOH A 1001 2.16 REMARK 500 O HOH A 912 O HOH A 923 2.16 REMARK 500 OE1 GLU A 64 O HOH A 603 2.17 REMARK 500 O HOH A 680 O HOH A 872 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 280 O HOH A 1042 4465 1.99 REMARK 500 O HOH A 690 O HOH A 1042 4465 2.09 REMARK 500 O HOH A 755 O HOH A 1024 4465 2.10 REMARK 500 O HOH A 636 O HOH A 917 4465 2.11 REMARK 500 O HOH A 902 O HOH A 951 8665 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 102.52 -165.60 REMARK 500 ALA A 35 81.15 -163.93 REMARK 500 TYR A 135 -60.16 -143.86 REMARK 500 LEU A 244 -87.08 -95.32 REMARK 500 SER A 294 60.44 -166.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1039 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1040 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1041 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1042 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A1043 DISTANCE = 7.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 356 SG REMARK 620 2 HEM A 501 NA 102.8 REMARK 620 3 HEM A 501 NB 98.3 87.7 REMARK 620 4 HEM A 501 NC 96.7 160.5 89.2 REMARK 620 5 HEM A 501 ND 101.9 88.3 159.8 88.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JZ3 A 502 DBREF1 6HQL A 1 407 UNP A0A076MY51_AMYME DBREF2 6HQL A A0A076MY51 1 407 SEQADV 6HQL HIS A 169 UNP A0A076MY5 PHE 169 ENGINEERED MUTATION SEQADV 6HQL HIS A 210 UNP A0A076MY5 GLN 210 CONFLICT SEQRES 1 A 407 MET THR THR THR GLU ARG PRO ASP LEU ALA TRP LEU ASP SEQRES 2 A 407 GLU VAL THR MET THR GLN LEU GLU ARG ASN PRO TYR GLU SEQRES 3 A 407 VAL TYR GLU ARG LEU ARG ALA GLU ALA PRO LEU ALA PHE SEQRES 4 A 407 VAL PRO VAL LEU GLY SER TYR VAL ALA SER THR ALA GLU SEQRES 5 A 407 VAL CYS ARG GLU VAL ALA THR SER PRO ASP PHE GLU ALA SEQRES 6 A 407 VAL ILE THR PRO ALA GLY GLY ARG THR PHE GLY HIS PRO SEQRES 7 A 407 ALA ILE ILE GLY VAL ASN GLY ASP ILE HIS ALA ASP LEU SEQRES 8 A 407 ARG SER MET VAL GLU PRO ALA LEU GLN PRO ALA GLU VAL SEQRES 9 A 407 ASP ARG TRP ILE ASP ASP LEU VAL ARG PRO ILE ALA ARG SEQRES 10 A 407 ARG TYR LEU GLU ARG PHE GLU ASN ASP GLY HIS ALA GLU SEQRES 11 A 407 LEU VAL ALA GLN TYR CYS GLU PRO VAL SER VAL ARG SER SEQRES 12 A 407 LEU GLY ASP LEU LEU GLY LEU GLN GLU VAL ASP SER ASP SEQRES 13 A 407 LYS LEU ARG GLU TRP PHE ALA LYS LEU ASN ARG SER HIS SEQRES 14 A 407 THR ASN ALA ALA VAL ASP GLU ASN GLY GLU PHE ALA ASN SEQRES 15 A 407 PRO GLU GLY PHE ALA GLU GLY ASP GLN ALA LYS ALA GLU SEQRES 16 A 407 ILE ARG ALA VAL VAL ASP PRO LEU ILE ASP LYS TRP ILE SEQRES 17 A 407 GLU HIS PRO ASP ASP SER ALA ILE SER HIS TRP LEU HIS SEQRES 18 A 407 ASP GLY MET PRO PRO GLY GLN THR ARG ASP ARG GLU TYR SEQRES 19 A 407 ILE TYR PRO THR ILE TYR VAL TYR LEU LEU GLY ALA MET SEQRES 20 A 407 GLN GLU PRO GLY HIS GLY MET ALA SER THR LEU VAL GLY SEQRES 21 A 407 LEU PHE SER ARG PRO GLU GLN LEU GLU GLU VAL VAL ASP SEQRES 22 A 407 ASP PRO THR LEU ILE PRO ARG ALA ILE ALA GLU GLY LEU SEQRES 23 A 407 ARG TRP THR SER PRO ILE TRP SER ALA THR ALA ARG ILE SEQRES 24 A 407 SER THR LYS PRO VAL THR ILE ALA GLY VAL ASP LEU PRO SEQRES 25 A 407 ALA GLY THR PRO VAL MET LEU SER TYR GLY SER ALA ASN SEQRES 26 A 407 HIS ASP THR GLY LYS TYR GLU ALA PRO SER GLN TYR ASP SEQRES 27 A 407 LEU HIS ARG PRO PRO LEU PRO HIS LEU ALA PHE GLY ALA SEQRES 28 A 407 GLY ASN HIS ALA CYS ALA GLY ILE TYR PHE ALA ASN HIS SEQRES 29 A 407 VAL MET ARG ILE ALA LEU GLU GLU LEU PHE GLU ALA ILE SEQRES 30 A 407 PRO ASN LEU GLU ARG ASP THR ARG GLU GLY VAL GLU PHE SEQRES 31 A 407 TRP GLY TRP GLY PHE ARG GLY PRO THR SER LEU HIS VAL SEQRES 32 A 407 THR TRP GLU VAL HET HEM A 501 43 HET JZ3 A 502 9 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM JZ3 GUAIACOL HETSYN HEM HEME HETSYN JZ3 2-METHOXYPHENOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 JZ3 C7 H8 O2 FORMUL 4 HOH *443(H2 O) HELIX 1 AA1 ARG A 6 VAL A 15 5 10 HELIX 2 AA2 THR A 16 ASN A 23 1 8 HELIX 3 AA3 PRO A 24 ALA A 35 1 12 HELIX 4 AA4 PRO A 41 GLY A 44 5 4 HELIX 5 AA5 THR A 50 SER A 60 1 11 HELIX 6 AA6 THR A 68 GLY A 76 1 9 HELIX 7 AA7 ALA A 79 VAL A 83 5 5 HELIX 8 AA8 ASN A 84 GLN A 100 1 17 HELIX 9 AA9 GLN A 100 ARG A 122 1 23 HELIX 10 AB1 LEU A 131 TYR A 135 1 5 HELIX 11 AB2 TYR A 135 GLY A 149 1 15 HELIX 12 AB3 ASP A 154 THR A 170 1 17 HELIX 13 AB4 ASN A 182 GLY A 185 5 4 HELIX 14 AB5 PHE A 186 HIS A 210 1 25 HELIX 15 AB6 SER A 214 ASP A 222 1 9 HELIX 16 AB7 ASP A 231 ARG A 264 1 34 HELIX 17 AB8 ARG A 264 ASP A 274 1 11 HELIX 18 AB9 LEU A 277 THR A 289 1 13 HELIX 19 AC1 SER A 320 ASN A 325 1 6 HELIX 20 AC2 ALA A 351 ALA A 355 5 5 HELIX 21 AC3 GLY A 358 ILE A 377 1 20 SHEET 1 AA1 5 LEU A 37 VAL A 40 0 SHEET 2 AA1 5 SER A 45 ALA A 48 -1 O SER A 45 N VAL A 40 SHEET 3 AA1 5 PRO A 316 LEU A 319 1 O MET A 318 N ALA A 48 SHEET 4 AA1 5 THR A 296 SER A 300 -1 N ARG A 298 O VAL A 317 SHEET 5 AA1 5 PHE A 63 VAL A 66 -1 N GLU A 64 O ILE A 299 SHEET 1 AA2 3 HIS A 128 GLU A 130 0 SHEET 2 AA2 3 HIS A 402 THR A 404 -1 O VAL A 403 N ALA A 129 SHEET 3 AA2 3 GLU A 381 ARG A 382 -1 N GLU A 381 O THR A 404 SHEET 1 AA3 2 VAL A 304 ILE A 306 0 SHEET 2 AA3 2 VAL A 309 LEU A 311 -1 O LEU A 311 N VAL A 304 SHEET 1 AA4 2 PHE A 390 TRP A 391 0 SHEET 2 AA4 2 GLY A 397 PRO A 398 -1 O GLY A 397 N TRP A 391 LINK SG CYS A 356 FE HEM A 501 1555 1555 2.36 CISPEP 1 HIS A 77 PRO A 78 0 2.16 SITE 1 AC1 23 ILE A 80 ILE A 81 HIS A 88 ARG A 92 SITE 2 AC1 23 LEU A 99 TYR A 242 ALA A 246 GLU A 249 SITE 3 AC1 23 PRO A 250 ILE A 292 THR A 296 ARG A 298 SITE 4 AC1 23 TYR A 321 ALA A 348 PHE A 349 GLY A 350 SITE 5 AC1 23 ALA A 351 HIS A 354 ALA A 355 CYS A 356 SITE 6 AC1 23 MET A 366 JZ3 A 502 HOH A 735 SITE 1 AC2 7 VAL A 241 LEU A 244 GLY A 245 ALA A 246 SITE 2 AC2 7 ILE A 292 THR A 296 HEM A 501 CRYST1 101.986 101.986 109.905 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009805 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009099 0.00000