HEADER OXIDOREDUCTASE 25-SEP-18 6HQM TITLE CRYSTAL STRUCTURE OF GCOA F169I BOUND TO GUAIACOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS SP. ATCC 39116; SOURCE 3 ORGANISM_TAXID: 385957; SOURCE 4 GENE: AMETH_3834; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME, P450, LIGNIN., OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.B.MALLINSON,D.J.HINCHEN,M.D.ALLEN,C.W.JOHNSON,G.T.BECKHAM, AUTHOR 2 J.E.MCGEEHAN REVDAT 5 24-JAN-24 6HQM 1 REMARK REVDAT 4 30-MAR-22 6HQM 1 REMARK REVDAT 3 24-JUL-19 6HQM 1 JRNL REVDAT 2 10-JUL-19 6HQM 1 JRNL REVDAT 1 03-JUL-19 6HQM 0 JRNL AUTH M.M.MACHOVINA,S.J.B.MALLINSON,B.C.KNOTT,A.W.MEYERS, JRNL AUTH 2 M.GARCIA-BORRAS,L.BU,J.E.GADO,A.OLIVER,G.P.SCHMIDT, JRNL AUTH 3 D.J.HINCHEN,M.F.CROWLEY,C.W.JOHNSON,E.L.NEIDLE,C.M.PAYNE, JRNL AUTH 4 K.N.HOUK,G.T.BECKHAM,J.E.MCGEEHAN,J.L.DUBOIS JRNL TITL ENABLING MICROBIAL SYRINGOL CONVERSION THROUGH JRNL TITL 2 STRUCTURE-GUIDED PROTEIN ENGINEERING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 13970 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31235604 JRNL DOI 10.1073/PNAS.1820001116 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 54123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6262 - 4.9361 1.00 2929 185 0.1668 0.1680 REMARK 3 2 4.9361 - 3.9183 1.00 2819 132 0.1215 0.1325 REMARK 3 3 3.9183 - 3.4231 1.00 2776 133 0.1275 0.1327 REMARK 3 4 3.4231 - 3.1102 1.00 2735 142 0.1426 0.1599 REMARK 3 5 3.1102 - 2.8873 1.00 2737 150 0.1634 0.1691 REMARK 3 6 2.8873 - 2.7171 1.00 2729 127 0.1778 0.2126 REMARK 3 7 2.7171 - 2.5810 1.00 2721 128 0.1772 0.1986 REMARK 3 8 2.5810 - 2.4686 1.00 2706 152 0.1645 0.1798 REMARK 3 9 2.4686 - 2.3736 1.00 2717 116 0.1538 0.1935 REMARK 3 10 2.3736 - 2.2917 1.00 2708 110 0.1575 0.1894 REMARK 3 11 2.2917 - 2.2200 0.99 2693 129 0.1656 0.2099 REMARK 3 12 2.2200 - 2.1566 0.99 2670 137 0.1648 0.1837 REMARK 3 13 2.1566 - 2.0998 0.99 2673 153 0.1715 0.2027 REMARK 3 14 2.0998 - 2.0486 0.99 2646 162 0.1877 0.2275 REMARK 3 15 2.0486 - 2.0020 0.99 2669 135 0.2084 0.2342 REMARK 3 16 2.0020 - 1.9594 0.99 2627 146 0.2224 0.2760 REMARK 3 17 1.9594 - 1.9202 0.99 2656 150 0.2465 0.3064 REMARK 3 18 1.9202 - 1.8840 0.99 2638 129 0.2808 0.2940 REMARK 3 19 1.8840 - 1.8503 0.98 2625 133 0.3039 0.3934 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3235 REMARK 3 ANGLE : 1.042 4439 REMARK 3 CHIRALITY : 0.060 474 REMARK 3 PLANARITY : 0.007 581 REMARK 3 DIHEDRAL : 4.539 1884 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 46.9146 81.6712 41.3709 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.1769 REMARK 3 T33: 0.1946 T12: 0.0441 REMARK 3 T13: -0.0019 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.7772 L22: 0.6199 REMARK 3 L33: 0.9485 L12: 0.1976 REMARK 3 L13: -0.1169 L23: 0.2588 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.0623 S13: -0.0147 REMARK 3 S21: 0.1149 S22: 0.0252 S23: -0.0265 REMARK 3 S31: 0.0924 S32: 0.1274 S33: -0.0055 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54123 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 56.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, HEPES, GUAIACOL., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.27250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.60500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.40875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.60500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.13625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.60500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.40875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.60500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.13625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.27250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 620 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 995 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 VAL A 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 9 CG CD1 CD2 REMARK 470 ARG A 22 CD NE CZ NH1 NH2 REMARK 470 ARG A 55 NE CZ NH1 NH2 REMARK 470 ARG A 118 CZ NH1 NH2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 ASP A 154 OD1 OD2 REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 GLN A 191 OE1 NE2 REMARK 470 LYS A 302 CD CE NZ REMARK 470 GLU A 332 CD OE1 OE2 REMARK 470 GLU A 375 CD OE1 OE2 REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 THR A 384 OG1 CG2 REMARK 470 ARG A 385 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 386 CD OE1 OE2 REMARK 470 GLU A 389 OE1 OE2 REMARK 470 GLU A 406 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 849 O HOH A 952 1.99 REMARK 500 O HOH A 889 O HOH A 894 2.03 REMARK 500 O HOH A 763 O HOH A 878 2.12 REMARK 500 O HOH A 960 O HOH A 970 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 953 O HOH A 960 4465 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 101.30 -164.32 REMARK 500 ALA A 35 82.67 -161.85 REMARK 500 TYR A 135 -59.58 -142.76 REMARK 500 LEU A 150 41.12 -100.12 REMARK 500 LEU A 244 -87.75 -94.52 REMARK 500 SER A 294 69.17 -161.26 REMARK 500 ASN A 379 30.28 -99.36 REMARK 500 ASP A 383 94.74 -64.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1024 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1025 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1026 DISTANCE = 7.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 356 SG REMARK 620 2 HEM A 501 NA 101.3 REMARK 620 3 HEM A 501 NB 97.1 87.1 REMARK 620 4 HEM A 501 NC 96.8 161.9 90.6 REMARK 620 5 HEM A 501 ND 102.8 88.3 160.0 87.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JZ3 A 502 DBREF1 6HQM A 1 407 UNP A0A076MY51_AMYME DBREF2 6HQM A A0A076MY51 1 407 SEQADV 6HQM GLY A -1 UNP A0A076MY5 EXPRESSION TAG SEQADV 6HQM PRO A 0 UNP A0A076MY5 EXPRESSION TAG SEQADV 6HQM ILE A 169 UNP A0A076MY5 PHE 169 ENGINEERED MUTATION SEQADV 6HQM HIS A 210 UNP A0A076MY5 GLN 210 CONFLICT SEQRES 1 A 409 GLY PRO MET THR THR THR GLU ARG PRO ASP LEU ALA TRP SEQRES 2 A 409 LEU ASP GLU VAL THR MET THR GLN LEU GLU ARG ASN PRO SEQRES 3 A 409 TYR GLU VAL TYR GLU ARG LEU ARG ALA GLU ALA PRO LEU SEQRES 4 A 409 ALA PHE VAL PRO VAL LEU GLY SER TYR VAL ALA SER THR SEQRES 5 A 409 ALA GLU VAL CYS ARG GLU VAL ALA THR SER PRO ASP PHE SEQRES 6 A 409 GLU ALA VAL ILE THR PRO ALA GLY GLY ARG THR PHE GLY SEQRES 7 A 409 HIS PRO ALA ILE ILE GLY VAL ASN GLY ASP ILE HIS ALA SEQRES 8 A 409 ASP LEU ARG SER MET VAL GLU PRO ALA LEU GLN PRO ALA SEQRES 9 A 409 GLU VAL ASP ARG TRP ILE ASP ASP LEU VAL ARG PRO ILE SEQRES 10 A 409 ALA ARG ARG TYR LEU GLU ARG PHE GLU ASN ASP GLY HIS SEQRES 11 A 409 ALA GLU LEU VAL ALA GLN TYR CYS GLU PRO VAL SER VAL SEQRES 12 A 409 ARG SER LEU GLY ASP LEU LEU GLY LEU GLN GLU VAL ASP SEQRES 13 A 409 SER ASP LYS LEU ARG GLU TRP PHE ALA LYS LEU ASN ARG SEQRES 14 A 409 SER ILE THR ASN ALA ALA VAL ASP GLU ASN GLY GLU PHE SEQRES 15 A 409 ALA ASN PRO GLU GLY PHE ALA GLU GLY ASP GLN ALA LYS SEQRES 16 A 409 ALA GLU ILE ARG ALA VAL VAL ASP PRO LEU ILE ASP LYS SEQRES 17 A 409 TRP ILE GLU HIS PRO ASP ASP SER ALA ILE SER HIS TRP SEQRES 18 A 409 LEU HIS ASP GLY MET PRO PRO GLY GLN THR ARG ASP ARG SEQRES 19 A 409 GLU TYR ILE TYR PRO THR ILE TYR VAL TYR LEU LEU GLY SEQRES 20 A 409 ALA MET GLN GLU PRO GLY HIS GLY MET ALA SER THR LEU SEQRES 21 A 409 VAL GLY LEU PHE SER ARG PRO GLU GLN LEU GLU GLU VAL SEQRES 22 A 409 VAL ASP ASP PRO THR LEU ILE PRO ARG ALA ILE ALA GLU SEQRES 23 A 409 GLY LEU ARG TRP THR SER PRO ILE TRP SER ALA THR ALA SEQRES 24 A 409 ARG ILE SER THR LYS PRO VAL THR ILE ALA GLY VAL ASP SEQRES 25 A 409 LEU PRO ALA GLY THR PRO VAL MET LEU SER TYR GLY SER SEQRES 26 A 409 ALA ASN HIS ASP THR GLY LYS TYR GLU ALA PRO SER GLN SEQRES 27 A 409 TYR ASP LEU HIS ARG PRO PRO LEU PRO HIS LEU ALA PHE SEQRES 28 A 409 GLY ALA GLY ASN HIS ALA CYS ALA GLY ILE TYR PHE ALA SEQRES 29 A 409 ASN HIS VAL MET ARG ILE ALA LEU GLU GLU LEU PHE GLU SEQRES 30 A 409 ALA ILE PRO ASN LEU GLU ARG ASP THR ARG GLU GLY VAL SEQRES 31 A 409 GLU PHE TRP GLY TRP GLY PHE ARG GLY PRO THR SER LEU SEQRES 32 A 409 HIS VAL THR TRP GLU VAL HET HEM A 501 43 HET JZ3 A 502 9 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM JZ3 GUAIACOL HETSYN HEM HEME HETSYN JZ3 2-METHOXYPHENOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 JZ3 C7 H8 O2 FORMUL 4 HOH *426(H2 O) HELIX 1 AA1 ARG A 6 VAL A 15 5 10 HELIX 2 AA2 THR A 16 ASN A 23 1 8 HELIX 3 AA3 PRO A 24 ALA A 35 1 12 HELIX 4 AA4 PRO A 41 GLY A 44 5 4 HELIX 5 AA5 THR A 50 SER A 60 1 11 HELIX 6 AA6 THR A 68 GLY A 76 1 9 HELIX 7 AA7 ALA A 79 VAL A 83 5 5 HELIX 8 AA8 ASN A 84 GLN A 100 1 17 HELIX 9 AA9 GLN A 100 ARG A 122 1 23 HELIX 10 AB1 LEU A 131 TYR A 135 1 5 HELIX 11 AB2 TYR A 135 GLY A 149 1 15 HELIX 12 AB3 ASP A 154 THR A 170 1 17 HELIX 13 AB4 ASN A 182 GLY A 185 5 4 HELIX 14 AB5 PHE A 186 HIS A 210 1 25 HELIX 15 AB6 SER A 214 ASP A 222 1 9 HELIX 16 AB7 ASP A 231 ARG A 264 1 34 HELIX 17 AB8 ARG A 264 ASP A 274 1 11 HELIX 18 AB9 LEU A 277 THR A 289 1 13 HELIX 19 AC1 SER A 320 ASN A 325 1 6 HELIX 20 AC2 ALA A 351 ALA A 355 5 5 HELIX 21 AC3 GLY A 358 ILE A 377 1 20 SHEET 1 AA1 5 LEU A 37 VAL A 40 0 SHEET 2 AA1 5 SER A 45 ALA A 48 -1 O VAL A 47 N ALA A 38 SHEET 3 AA1 5 PRO A 316 LEU A 319 1 O MET A 318 N ALA A 48 SHEET 4 AA1 5 THR A 296 SER A 300 -1 N ARG A 298 O VAL A 317 SHEET 5 AA1 5 PHE A 63 VAL A 66 -1 N GLU A 64 O ILE A 299 SHEET 1 AA2 3 HIS A 128 GLU A 130 0 SHEET 2 AA2 3 HIS A 402 THR A 404 -1 O VAL A 403 N ALA A 129 SHEET 3 AA2 3 GLU A 381 ARG A 382 -1 N GLU A 381 O THR A 404 SHEET 1 AA3 2 VAL A 304 ILE A 306 0 SHEET 2 AA3 2 VAL A 309 LEU A 311 -1 O LEU A 311 N VAL A 304 SHEET 1 AA4 2 PHE A 390 TRP A 391 0 SHEET 2 AA4 2 GLY A 397 PRO A 398 -1 O GLY A 397 N TRP A 391 LINK SG CYS A 356 FE HEM A 501 1555 1555 2.42 CISPEP 1 HIS A 77 PRO A 78 0 -1.18 SITE 1 AC1 23 ILE A 80 ILE A 81 HIS A 88 ARG A 92 SITE 2 AC1 23 LEU A 99 TYR A 242 ALA A 246 GLU A 249 SITE 3 AC1 23 PRO A 250 ILE A 292 THR A 296 ARG A 298 SITE 4 AC1 23 TYR A 321 ALA A 348 PHE A 349 GLY A 350 SITE 5 AC1 23 ALA A 351 HIS A 354 ALA A 355 CYS A 356 SITE 6 AC1 23 MET A 366 JZ3 A 502 HOH A 710 SITE 1 AC2 7 VAL A 241 LEU A 244 GLY A 245 ALA A 246 SITE 2 AC2 7 ILE A 292 THR A 296 HEM A 501 CRYST1 105.210 105.210 112.545 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008885 0.00000