HEADER OXIDOREDUCTASE 25-SEP-18 6HQR TITLE CRYSTAL STRUCTURE OF GCOA F169H BOUND TO SYRINGOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS SP. ATCC 39116; SOURCE 3 ORGANISM_TAXID: 385957; SOURCE 4 GENE: AMETH_3834; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME, P450, LIGNIN., OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.B.MALLINSON,D.J.HINCHEN,M.D.ALLEN,C.W.JOHNSON,G.T.BECKHAM, AUTHOR 2 J.E.MCGEEHAN REVDAT 5 24-JAN-24 6HQR 1 REMARK REVDAT 4 30-MAR-22 6HQR 1 REMARK REVDAT 3 24-JUL-19 6HQR 1 JRNL REVDAT 2 10-JUL-19 6HQR 1 JRNL REVDAT 1 03-JUL-19 6HQR 0 JRNL AUTH M.M.MACHOVINA,S.J.B.MALLINSON,B.C.KNOTT,A.W.MEYERS, JRNL AUTH 2 M.GARCIA-BORRAS,L.BU,J.E.GADO,A.OLIVER,G.P.SCHMIDT, JRNL AUTH 3 D.J.HINCHEN,M.F.CROWLEY,C.W.JOHNSON,E.L.NEIDLE,C.M.PAYNE, JRNL AUTH 4 K.N.HOUK,G.T.BECKHAM,J.E.MCGEEHAN,J.L.DUBOIS JRNL TITL ENABLING MICROBIAL SYRINGOL CONVERSION THROUGH JRNL TITL 2 STRUCTURE-GUIDED PROTEIN ENGINEERING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 13970 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31235604 JRNL DOI 10.1073/PNAS.1820001116 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 53703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.0728 - 4.7734 1.00 3026 129 0.1744 0.1751 REMARK 3 2 4.7734 - 3.7891 1.00 2848 134 0.1157 0.1376 REMARK 3 3 3.7891 - 3.3103 0.99 2781 169 0.1211 0.1565 REMARK 3 4 3.3103 - 3.0077 0.99 2778 125 0.1476 0.1422 REMARK 3 5 3.0077 - 2.7921 0.99 2752 155 0.1670 0.1822 REMARK 3 6 2.7921 - 2.6275 0.99 2735 143 0.1826 0.2097 REMARK 3 7 2.6275 - 2.4959 0.98 2699 147 0.1785 0.2194 REMARK 3 8 2.4959 - 2.3873 0.96 2634 155 0.1748 0.2275 REMARK 3 9 2.3873 - 2.2954 0.96 2653 139 0.1812 0.2350 REMARK 3 10 2.2954 - 2.2161 0.95 2589 159 0.1802 0.2363 REMARK 3 11 2.2161 - 2.1469 0.95 2602 136 0.1853 0.2330 REMARK 3 12 2.1469 - 2.0855 0.95 2622 126 0.2015 0.2040 REMARK 3 13 2.0855 - 2.0306 0.96 2616 134 0.2073 0.2658 REMARK 3 14 2.0306 - 1.9810 0.96 2633 132 0.2120 0.2697 REMARK 3 15 1.9810 - 1.9360 0.96 2627 130 0.2238 0.3037 REMARK 3 16 1.9360 - 1.8948 0.96 2611 134 0.2448 0.2504 REMARK 3 17 1.8948 - 1.8569 0.96 2617 117 0.2559 0.3229 REMARK 3 18 1.8569 - 1.8219 0.96 2627 138 0.2792 0.3434 REMARK 3 19 1.8219 - 1.7893 0.96 2607 144 0.2999 0.3939 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3308 REMARK 3 ANGLE : 1.353 4535 REMARK 3 CHIRALITY : 0.083 477 REMARK 3 PLANARITY : 0.010 599 REMARK 3 DIHEDRAL : 4.625 1932 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 46.5626 78.0460 41.6133 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1215 REMARK 3 T33: 0.1375 T12: 0.0031 REMARK 3 T13: -0.0011 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.4804 L22: 0.2950 REMARK 3 L33: 0.7143 L12: 0.0899 REMARK 3 L13: -0.0988 L23: 0.1216 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: -0.0269 S13: -0.0070 REMARK 3 S21: 0.0330 S22: 0.0251 S23: -0.0471 REMARK 3 S31: 0.0267 S32: 0.0883 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53703 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 72.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, HEPES, SYRINGOL., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.98500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.05200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.05200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.47750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.05200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.05200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.49250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.05200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.05200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.47750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.05200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.05200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.49250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.98500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 627 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 970 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 951 O HOH A 954 2.01 REMARK 500 O HOH A 779 O HOH A 939 2.06 REMARK 500 O HOH A 1015 O HOH A 1017 2.07 REMARK 500 O HOH A 606 O HOH A 918 2.11 REMARK 500 O HOH A 755 O HOH A 941 2.15 REMARK 500 O HOH A 629 O HOH A 653 2.16 REMARK 500 O HOH A 915 O HOH A 959 2.17 REMARK 500 O HOH A 616 O HOH A 933 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 611 O HOH A 945 8665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 99.14 -167.93 REMARK 500 ALA A 35 82.54 -165.94 REMARK 500 TYR A 135 -60.83 -142.92 REMARK 500 LEU A 150 38.38 -97.37 REMARK 500 ASP A 212 -159.71 -140.70 REMARK 500 LEU A 244 -85.35 -97.89 REMARK 500 SER A 294 58.63 -164.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1014 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1015 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A1016 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1017 DISTANCE = 6.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 356 SG REMARK 620 2 HEM A 501 NA 103.1 REMARK 620 3 HEM A 501 NB 98.6 89.4 REMARK 620 4 HEM A 501 NC 96.3 160.6 87.9 REMARK 620 5 HEM A 501 ND 102.8 85.2 158.6 90.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3DM A 502 DBREF1 6HQR A 1 407 UNP A0A076MY51_AMYME DBREF2 6HQR A A0A076MY51 1 407 SEQADV 6HQR HIS A 169 UNP A0A076MY5 PHE 169 ENGINEERED MUTATION SEQADV 6HQR HIS A 210 UNP A0A076MY5 GLN 210 CONFLICT SEQRES 1 A 407 MET THR THR THR GLU ARG PRO ASP LEU ALA TRP LEU ASP SEQRES 2 A 407 GLU VAL THR MET THR GLN LEU GLU ARG ASN PRO TYR GLU SEQRES 3 A 407 VAL TYR GLU ARG LEU ARG ALA GLU ALA PRO LEU ALA PHE SEQRES 4 A 407 VAL PRO VAL LEU GLY SER TYR VAL ALA SER THR ALA GLU SEQRES 5 A 407 VAL CYS ARG GLU VAL ALA THR SER PRO ASP PHE GLU ALA SEQRES 6 A 407 VAL ILE THR PRO ALA GLY GLY ARG THR PHE GLY HIS PRO SEQRES 7 A 407 ALA ILE ILE GLY VAL ASN GLY ASP ILE HIS ALA ASP LEU SEQRES 8 A 407 ARG SER MET VAL GLU PRO ALA LEU GLN PRO ALA GLU VAL SEQRES 9 A 407 ASP ARG TRP ILE ASP ASP LEU VAL ARG PRO ILE ALA ARG SEQRES 10 A 407 ARG TYR LEU GLU ARG PHE GLU ASN ASP GLY HIS ALA GLU SEQRES 11 A 407 LEU VAL ALA GLN TYR CYS GLU PRO VAL SER VAL ARG SER SEQRES 12 A 407 LEU GLY ASP LEU LEU GLY LEU GLN GLU VAL ASP SER ASP SEQRES 13 A 407 LYS LEU ARG GLU TRP PHE ALA LYS LEU ASN ARG SER HIS SEQRES 14 A 407 THR ASN ALA ALA VAL ASP GLU ASN GLY GLU PHE ALA ASN SEQRES 15 A 407 PRO GLU GLY PHE ALA GLU GLY ASP GLN ALA LYS ALA GLU SEQRES 16 A 407 ILE ARG ALA VAL VAL ASP PRO LEU ILE ASP LYS TRP ILE SEQRES 17 A 407 GLU HIS PRO ASP ASP SER ALA ILE SER HIS TRP LEU HIS SEQRES 18 A 407 ASP GLY MET PRO PRO GLY GLN THR ARG ASP ARG GLU TYR SEQRES 19 A 407 ILE TYR PRO THR ILE TYR VAL TYR LEU LEU GLY ALA MET SEQRES 20 A 407 GLN GLU PRO GLY HIS GLY MET ALA SER THR LEU VAL GLY SEQRES 21 A 407 LEU PHE SER ARG PRO GLU GLN LEU GLU GLU VAL VAL ASP SEQRES 22 A 407 ASP PRO THR LEU ILE PRO ARG ALA ILE ALA GLU GLY LEU SEQRES 23 A 407 ARG TRP THR SER PRO ILE TRP SER ALA THR ALA ARG ILE SEQRES 24 A 407 SER THR LYS PRO VAL THR ILE ALA GLY VAL ASP LEU PRO SEQRES 25 A 407 ALA GLY THR PRO VAL MET LEU SER TYR GLY SER ALA ASN SEQRES 26 A 407 HIS ASP THR GLY LYS TYR GLU ALA PRO SER GLN TYR ASP SEQRES 27 A 407 LEU HIS ARG PRO PRO LEU PRO HIS LEU ALA PHE GLY ALA SEQRES 28 A 407 GLY ASN HIS ALA CYS ALA GLY ILE TYR PHE ALA ASN HIS SEQRES 29 A 407 VAL MET ARG ILE ALA LEU GLU GLU LEU PHE GLU ALA ILE SEQRES 30 A 407 PRO ASN LEU GLU ARG ASP THR ARG GLU GLY VAL GLU PHE SEQRES 31 A 407 TRP GLY TRP GLY PHE ARG GLY PRO THR SER LEU HIS VAL SEQRES 32 A 407 THR TRP GLU VAL HET HEM A 501 43 HET 3DM A 502 11 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM 3DM 2,6-DIMETHOXYPHENOL HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 3DM C8 H10 O3 FORMUL 4 HOH *417(H2 O) HELIX 1 AA1 ARG A 6 VAL A 15 5 10 HELIX 2 AA2 THR A 16 ASN A 23 1 8 HELIX 3 AA3 PRO A 24 ALA A 35 1 12 HELIX 4 AA4 PRO A 41 GLY A 44 5 4 HELIX 5 AA5 THR A 50 SER A 60 1 11 HELIX 6 AA6 THR A 68 GLY A 76 1 9 HELIX 7 AA7 ALA A 79 VAL A 83 5 5 HELIX 8 AA8 ASN A 84 GLU A 96 1 13 HELIX 9 AA9 PRO A 97 LEU A 99 5 3 HELIX 10 AB1 GLN A 100 ARG A 122 1 23 HELIX 11 AB2 LEU A 131 TYR A 135 1 5 HELIX 12 AB3 TYR A 135 GLY A 149 1 15 HELIX 13 AB4 ASP A 154 THR A 170 1 17 HELIX 14 AB5 ASN A 182 GLY A 185 5 4 HELIX 15 AB6 PHE A 186 HIS A 210 1 25 HELIX 16 AB7 SER A 214 ASP A 222 1 9 HELIX 17 AB8 ASP A 231 ARG A 264 1 34 HELIX 18 AB9 ARG A 264 ASP A 274 1 11 HELIX 19 AC1 LEU A 277 THR A 289 1 13 HELIX 20 AC2 SER A 320 ASN A 325 1 6 HELIX 21 AC3 ALA A 351 ALA A 355 5 5 HELIX 22 AC4 GLY A 358 ILE A 377 1 20 SHEET 1 AA1 5 LEU A 37 PHE A 39 0 SHEET 2 AA1 5 TYR A 46 ALA A 48 -1 O VAL A 47 N ALA A 38 SHEET 3 AA1 5 PRO A 316 LEU A 319 1 O MET A 318 N TYR A 46 SHEET 4 AA1 5 THR A 296 SER A 300 -1 N ARG A 298 O VAL A 317 SHEET 5 AA1 5 PHE A 63 VAL A 66 -1 N GLU A 64 O ILE A 299 SHEET 1 AA2 3 HIS A 128 GLU A 130 0 SHEET 2 AA2 3 HIS A 402 THR A 404 -1 O VAL A 403 N ALA A 129 SHEET 3 AA2 3 GLU A 381 ARG A 382 -1 N GLU A 381 O THR A 404 SHEET 1 AA3 2 VAL A 304 ILE A 306 0 SHEET 2 AA3 2 VAL A 309 LEU A 311 -1 O LEU A 311 N VAL A 304 SHEET 1 AA4 2 PHE A 390 TRP A 391 0 SHEET 2 AA4 2 GLY A 397 PRO A 398 -1 O GLY A 397 N TRP A 391 LINK SG CYS A 356 FE HEM A 501 1555 1555 2.36 CISPEP 1 HIS A 77 PRO A 78 0 -4.30 SITE 1 AC1 23 ILE A 80 ILE A 81 HIS A 88 ARG A 92 SITE 2 AC1 23 LEU A 99 TYR A 242 ALA A 246 GLU A 249 SITE 3 AC1 23 PRO A 250 ILE A 292 THR A 296 ARG A 298 SITE 4 AC1 23 TYR A 321 ALA A 348 PHE A 349 GLY A 350 SITE 5 AC1 23 ALA A 351 HIS A 354 ALA A 355 CYS A 356 SITE 6 AC1 23 MET A 366 3DM A 502 HOH A 734 SITE 1 AC2 9 HIS A 169 VAL A 241 LEU A 244 GLY A 245 SITE 2 AC2 9 ALA A 246 ILE A 292 THR A 296 PHE A 395 SITE 3 AC2 9 HEM A 501 CRYST1 102.104 102.104 109.970 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009794 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009093 0.00000