HEADER PENICILLIN-BINDING PROTEIN 26-SEP-18 6HR9 TITLE NITROCEFIN ACYLATION OF BOTH CATALYTIC SERINES OF THE Y409 MUTANT OF TITLE 2 PENICILLIN-BINDING PROTEIN 3 FROM P. AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN D,D-TRANSPEPTIDASE FTSI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN 3,PBP-3; COMPND 5 EC: 3.4.16.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 5 / 1C / PRS 101 / PAO1; SOURCE 6 GENE: FTSI, PBPB, PA4418; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PENICILLIN-BINDING PROTEIN, PEPTIDOGLYCAN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BELLINI,C.G.DOWSON REVDAT 4 24-JAN-24 6HR9 1 REMARK REVDAT 3 20-JUL-22 6HR9 1 CAVEAT COMPND REMARK HETSYN REVDAT 3 2 1 FORMUL HELIX SHEET LINK REVDAT 3 3 1 ATOM REVDAT 2 25-AUG-21 6HR9 1 CAVEAT REMARK HELIX SHEET REVDAT 2 2 1 LINK SITE SCALE ATOM REVDAT 1 23-OCT-19 6HR9 0 JRNL AUTH D.BELLINI,C.G.DOWSON JRNL TITL NITROCEFIN ACYLATION OF BOTH CATALYTIC SERINES OF JRNL TITL 2 PENICILLIN-BINDING PROTEIN 3 FROM P. AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 32694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1683 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3930 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3728 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.94000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.577 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3873 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3683 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5260 ; 1.554 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8510 ; 1.256 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 7.016 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;30.224 ;20.704 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 632 ;17.679 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;21.633 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 502 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4399 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 803 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6HR9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35268 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 60.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3PBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 0.1M BIS-TRIS PROPANE, 1%(W/V) PROTAMINE SULPHATE, PH 7.8., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.02100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.36650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.63050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.36650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.02100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.63050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 45 REMARK 465 TYR A 46 REMARK 465 GLN A 47 REMARK 465 ASP A 48 REMARK 465 PRO A 49 REMARK 465 ALA A 50 REMARK 465 ARG A 51 REMARK 465 PHE A 472 REMARK 465 ARG A 473 REMARK 465 ARG A 489 REMARK 465 LYS A 490 REMARK 465 VAL A 491 REMARK 465 SER A 492 REMARK 465 VAL A 493 REMARK 465 GLY A 494 REMARK 465 THR A 495 REMARK 465 LYS A 496 REMARK 465 GLY A 497 REMARK 465 TYR A 498 REMARK 465 ARG A 499 REMARK 465 GLU A 500 REMARK 465 ASN A 501 REMARK 465 GLY A 531 REMARK 465 TYR A 532 REMARK 465 PHE A 533 REMARK 465 GLY A 534 REMARK 465 THR A 562 REMARK 465 ALA A 563 REMARK 465 THR A 564 REMARK 465 GLU A 565 REMARK 465 GLN A 566 REMARK 465 GLN A 567 REMARK 465 GLN A 568 REMARK 465 VAL A 569 REMARK 465 ASN A 570 REMARK 465 ALA A 571 REMARK 465 ALA A 572 REMARK 465 PRO A 573 REMARK 465 ALA A 574 REMARK 465 LYS A 575 REMARK 465 GLY A 576 REMARK 465 GLY A 577 REMARK 465 ARG A 578 REMARK 465 GLY A 579 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1372 O HOH A 1387 1.55 REMARK 500 O HOH A 1385 O HOH A 1389 1.58 REMARK 500 O HOH A 1373 O HOH A 1388 1.77 REMARK 500 O HOH A 1369 O HOH A 1380 2.03 REMARK 500 O HOH A 1361 O HOH A 1380 2.09 REMARK 500 O HOH A 1338 O HOH A 1374 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 166.70 -40.41 REMARK 500 LEU A 82 109.11 -58.47 REMARK 500 ALA A 92 46.01 -142.60 REMARK 500 GLU A 132 -51.47 85.03 REMARK 500 ASP A 169 -169.54 -75.13 REMARK 500 VAL A 203 99.22 -65.97 REMARK 500 LYS A 205 -95.35 -52.33 REMARK 500 ASP A 206 62.76 12.62 REMARK 500 VAL A 209 65.25 80.59 REMARK 500 ALA A 213 130.67 86.09 REMARK 500 ARG A 273 37.79 -96.22 REMARK 500 ASN A 275 57.18 -102.00 REMARK 500 PRO A 320 34.81 -95.39 REMARK 500 ARG A 338 -96.48 -116.63 REMARK 500 ASN A 427 43.72 -92.68 REMARK 500 GLU A 466 -92.99 -72.67 REMARK 500 ALA A 467 96.86 -34.25 REMARK 500 GLN A 468 -69.84 142.56 REMARK 500 ASP A 515 87.07 -150.94 REMARK 500 LYS A 529 65.22 -67.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 66 ASP A 67 149.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HR6 RELATED DB: PDB DBREF 6HR9 A 50 579 UNP G3XD46 FTSI_PSEAE 50 579 SEQADV 6HR9 GLY A 45 UNP G3XD46 EXPRESSION TAG SEQADV 6HR9 TYR A 46 UNP G3XD46 EXPRESSION TAG SEQADV 6HR9 GLN A 47 UNP G3XD46 EXPRESSION TAG SEQADV 6HR9 ASP A 48 UNP G3XD46 EXPRESSION TAG SEQADV 6HR9 PRO A 49 UNP G3XD46 EXPRESSION TAG SEQADV 6HR9 ALA A 409 UNP G3XD46 TYR 409 ENGINEERED MUTATION SEQRES 1 A 535 GLY TYR GLN ASP PRO ALA ARG SER VAL ARG HIS ILE ALA SEQRES 2 A 535 ILE PRO ALA HIS ARG GLY LEU ILE THR ASP ARG ASN GLY SEQRES 3 A 535 GLU PRO LEU ALA VAL SER THR PRO VAL THR THR LEU TRP SEQRES 4 A 535 ALA ASN PRO LYS GLU LEU MET THR ALA LYS GLU ARG TRP SEQRES 5 A 535 PRO GLN LEU ALA ALA ALA LEU GLY GLN ASP THR LYS LEU SEQRES 6 A 535 PHE ALA ASP ARG ILE GLU GLN ASN ALA GLU ARG GLU PHE SEQRES 7 A 535 ILE TYR LEU VAL ARG GLY LEU THR PRO GLU GLN GLY GLU SEQRES 8 A 535 GLY VAL ILE ALA LEU LYS VAL PRO GLY VAL TYR SER ILE SEQRES 9 A 535 GLU GLU PHE ARG ARG PHE TYR PRO ALA GLY GLU VAL VAL SEQRES 10 A 535 ALA HIS ALA VAL GLY PHE THR ASP VAL ASP ASP ARG GLY SEQRES 11 A 535 ARG GLU GLY ILE GLU LEU ALA PHE ASP GLU TRP LEU ALA SEQRES 12 A 535 GLY VAL PRO GLY LYS ARG GLN VAL LEU LYS ASP ARG ARG SEQRES 13 A 535 GLY ARG VAL ILE LYS ASP VAL GLN VAL THR LYS ASN ALA SEQRES 14 A 535 LYS PRO GLY LYS THR LEU ALA LEU SER ILE ASP LEU ARG SEQRES 15 A 535 LEU GLN TYR LEU ALA HIS ARG GLU LEU ARG ASN ALA LEU SEQRES 16 A 535 LEU GLU ASN GLY ALA LYS ALA GLY SER LEU VAL ILE MET SEQRES 17 A 535 ASP VAL LYS THR GLY GLU ILE LEU ALA MET THR ASN GLN SEQRES 18 A 535 PRO THR TYR ASN PRO ASN ASN ARG ARG ASN LEU GLN PRO SEQRES 19 A 535 ALA ALA MET ARG ASN ARG ALA MET ILE ASP VAL PHE GLU SEQRES 20 A 535 PRO GLY SER THR VAL LYS PRO PHE SER MET SER ALA ALA SEQRES 21 A 535 LEU ALA SER GLY ARG TRP LYS PRO SER ASP ILE VAL ASP SEQRES 22 A 535 VAL TYR PRO GLY THR LEU GLN ILE GLY ARG TYR THR ILE SEQRES 23 A 535 ARG ASP VAL SER ARG ASN SER ARG GLN LEU ASP LEU THR SEQRES 24 A 535 GLY ILE LEU ILE LYS SER SER ASN VAL GLY ILE SER LYS SEQRES 25 A 535 ILE ALA PHE ASP ILE GLY ALA GLU SER ILE TYR SER VAL SEQRES 26 A 535 MET GLN GLN VAL GLY LEU GLY GLN ASP THR GLY LEU GLY SEQRES 27 A 535 PHE PRO GLY GLU ARG VAL GLY ASN LEU PRO ASN HIS ARG SEQRES 28 A 535 LYS TRP PRO LYS ALA GLU THR ALA THR LEU ALA TYR GLY SEQRES 29 A 535 ALA GLY LEU SER VAL THR ALA ILE GLN LEU ALA HIS ALA SEQRES 30 A 535 TYR ALA ALA LEU ALA ASN ASP GLY LYS SER VAL PRO LEU SEQRES 31 A 535 SER MET THR ARG VAL ASP ARG VAL PRO ASP GLY VAL GLN SEQRES 32 A 535 VAL ILE SER PRO GLU VAL ALA SER THR VAL GLN GLY MET SEQRES 33 A 535 LEU GLN GLN VAL VAL GLU ALA GLN GLY GLY VAL PHE ARG SEQRES 34 A 535 ALA GLN VAL PRO GLY TYR HIS ALA ALA GLY LYS SER GLY SEQRES 35 A 535 THR ALA ARG LYS VAL SER VAL GLY THR LYS GLY TYR ARG SEQRES 36 A 535 GLU ASN ALA TYR ARG SER LEU PHE ALA GLY PHE ALA PRO SEQRES 37 A 535 ALA THR ASP PRO ARG ILE ALA MET VAL VAL VAL ILE ASP SEQRES 38 A 535 GLU PRO SER LYS ALA GLY TYR PHE GLY GLY LEU VAL SER SEQRES 39 A 535 ALA PRO VAL PHE SER LYS VAL MET ALA GLY ALA LEU ARG SEQRES 40 A 535 LEU MET ASN VAL PRO PRO ASP ASN LEU PRO THR ALA THR SEQRES 41 A 535 GLU GLN GLN GLN VAL ASN ALA ALA PRO ALA LYS GLY GLY SEQRES 42 A 535 ARG GLY HET NEF A1201 35 HET NEF A1202 35 HETNAM NEF NITROCEFIN - OPEN FORM HETSYN NEF (2R)-5-[(E)-2-(2,4-DINITROPHENYL)ETHENYL]-2-[(1R)-2- HETSYN 2 NEF OXIDANYL-2-OXIDANYLIDENE-1-(2-THIOPHEN-2- HETSYN 3 NEF YLETHANOYLAMINO)ETHYL]-3,6-DIHYDRO-2H-1,3-THIAZINE-4- HETSYN 4 NEF CARBOXYLIC ACID FORMUL 2 NEF 2(C21 H18 N4 O9 S2) FORMUL 4 HOH *102(H2 O) HELIX 1 AA1 ASN A 85 MET A 90 1 6 HELIX 2 AA2 THR A 91 GLU A 94 5 4 HELIX 3 AA3 ARG A 95 LEU A 103 1 9 HELIX 4 AA4 ASP A 106 GLN A 116 1 11 HELIX 5 AA5 GLN A 133 ALA A 139 1 7 HELIX 6 AA6 ALA A 157 VAL A 160 5 4 HELIX 7 AA7 VAL A 161 GLY A 166 1 6 HELIX 8 AA8 GLU A 176 PHE A 182 1 7 HELIX 9 AA9 PHE A 182 GLY A 188 1 7 HELIX 10 AB1 ASP A 224 ASN A 242 1 19 HELIX 11 AB2 GLN A 277 ARG A 282 5 6 HELIX 12 AB3 ASN A 283 ASP A 288 1 6 HELIX 13 AB4 PRO A 292 THR A 295 5 4 HELIX 14 AB5 VAL A 296 SER A 307 1 12 HELIX 15 AB6 LEU A 342 LYS A 348 1 7 HELIX 16 AB7 SER A 350 GLY A 362 1 13 HELIX 17 AB8 GLY A 362 VAL A 373 1 12 HELIX 18 AB9 PRO A 398 TYR A 407 1 10 HELIX 19 AC1 THR A 414 ASN A 427 1 14 HELIX 20 AC2 SER A 450 GLU A 466 1 17 HELIX 21 AC3 VAL A 537 MET A 553 1 17 SHEET 1 AA1 3 VAL A 53 ILE A 58 0 SHEET 2 AA1 3 GLY A 191 LYS A 197 -1 O GLY A 191 N ILE A 58 SHEET 3 AA1 3 VAL A 203 ILE A 204 -1 O ILE A 204 N LEU A 196 SHEET 1 AA2 3 ILE A 123 LEU A 129 0 SHEET 2 AA2 3 PRO A 72 ALA A 84 -1 N LEU A 82 O LEU A 125 SHEET 3 AA2 3 VAL A 145 PHE A 154 -1 O GLU A 150 N VAL A 79 SHEET 1 AA3 4 ILE A 123 LEU A 129 0 SHEET 2 AA3 4 PRO A 72 ALA A 84 -1 N LEU A 82 O LEU A 125 SHEET 3 AA3 4 ILE A 65 THR A 66 -1 N ILE A 65 O LEU A 73 SHEET 4 AA3 4 LEU A 219 ALA A 220 1 O LEU A 219 N THR A 66 SHEET 1 AA4 5 ILE A 259 GLN A 265 0 SHEET 2 AA4 5 ALA A 246 ASP A 253 -1 N ILE A 251 O ALA A 261 SHEET 3 AA4 5 ILE A 518 ASP A 525 -1 O ASP A 525 N ALA A 246 SHEET 4 AA4 5 ARG A 504 ALA A 511 -1 N SER A 505 O ILE A 524 SHEET 5 AA4 5 ALA A 482 ALA A 488 -1 N ALA A 482 O PHE A 510 SHEET 1 AA5 2 ILE A 315 ASP A 317 0 SHEET 2 AA5 2 GLN A 339 ASP A 341 -1 O LEU A 340 N VAL A 316 SHEET 1 AA6 2 THR A 322 ILE A 325 0 SHEET 2 AA6 2 TYR A 328 ARG A 331 -1 O TYR A 328 N ILE A 325 SHEET 1 AA7 2 LYS A 430 SER A 431 0 SHEET 2 AA7 2 VAL A 446 GLN A 447 -1 O VAL A 446 N SER A 431 LINK OG SER A 294 C1 NEF A1201 1555 1555 1.54 LINK OG SER A 349 C1 NEF A1202 1555 1555 1.55 CISPEP 1 GLN A 265 PRO A 266 0 -4.62 CISPEP 2 TYR A 319 PRO A 320 0 -1.88 CISPEP 3 ALA A 511 PRO A 512 0 -9.21 CRYST1 68.042 83.261 88.733 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011270 0.00000