HEADER BIOSYNTHETIC PROTEIN 29-SEP-18 6HSA TITLE THE CRYSTAL STRUCTURE OF TYPE II DEHYDROQUINASE FROM BUTYRIVIBRIO TITLE 2 CROSSOTUS DSM 2876 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-DEHYDROQUINASE,TYPE II DHQASE; COMPND 5 EC: 4.2.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BUTYRIVIBRIO CROSSOTUS DSM 2876; SOURCE 3 ORGANISM_TAXID: 511680; SOURCE 4 ATCC: 29175; SOURCE 5 GENE: AROQ, BUTYVIB_01550; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A+ KEYWDS SHIKIMATE PATHWAY, DEHYDRATASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.J.LAPTHORN,A.W.ROSZAK REVDAT 3 24-JAN-24 6HSA 1 REMARK REVDAT 2 30-OCT-19 6HSA 1 REMARK LINK ATOM REVDAT 1 23-OCT-19 6HSA 0 JRNL AUTH A.J.LAPTHORN,L.NER,A.W.ROSZAK JRNL TITL THE CRYSTAL STRUCTURE OF TYPE II DEHYDROQUINASE FROM JRNL TITL 2 BUTYRIVIBRIO CROSSOTUS DSM 2876 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.LIU,Y.M.LIU,Q.L.SUN,C.Y.JIANG,S.J.LIU REMARK 1 TITL UNRAVELING THE KINETIC DIVERSITY OF MICROBIAL REMARK 1 TITL 2 3-DEHYDROQUINATE DEHYDRATASES OF SHIKIMATE PATHWAY. REMARK 1 REF AMB EXPRESS V. 5 7 2015 REMARK 1 REFN ESSN 2191-0855 REMARK 1 PMID 25852984 REMARK 1 DOI 10.1186/S13568-014-0087-Y REMARK 1 REFERENCE 2 REMARK 1 AUTH A.W.ROSZAK,D.A.ROBINSON,T.KRELL,I.S.HUNTER,M.FREDRICKSON, REMARK 1 AUTH 2 C.ABELL,J.R.COGGINS,A.J.LAPTHORN REMARK 1 TITL THE STRUCTURE AND MECHANISM OF THE TYPE II DEHYDROQUINASE REMARK 1 TITL 2 FROM STREPTOMYCES COELICOLOR. REMARK 1 REF STRUCTURE V. 10 493 2002 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 11937054 REMARK 2 REMARK 2 RESOLUTION. 0.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 107213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.102 REMARK 3 R VALUE (WORKING SET) : 0.101 REMARK 3 FREE R VALUE : 0.120 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5762 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7229 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 420 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.012 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.014 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.008 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.290 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.987 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.981 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1324 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1285 ; 0.002 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1800 ; 2.040 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2939 ; 0.729 ; 1.610 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 6.137 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;34.466 ;24.595 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 243 ;12.557 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;14.446 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 176 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1561 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 309 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2609 ; 3.712 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 133 ;28.099 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2722 ; 9.325 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0780 -12.1130 12.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.0147 T22: 0.0145 REMARK 3 T33: 0.0281 T12: 0.0081 REMARK 3 T13: 0.0004 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.7155 L22: 0.4184 REMARK 3 L33: 0.4156 L12: 0.0212 REMARK 3 L13: -0.0993 L23: -0.0570 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: 0.0265 S13: 0.0738 REMARK 3 S21: 0.0039 S22: 0.0012 S23: 0.0797 REMARK 3 S31: -0.0405 S32: -0.0594 S33: -0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 6HSA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.826560 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112975 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.920 REMARK 200 RESOLUTION RANGE LOW (A) : 31.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6HS9 REMARK 200 REMARK 200 REMARK: HEXAGONAL PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM CITRATE PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.73800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.94274 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.01100 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 39.73800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 22.94274 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.01100 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 39.73800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 22.94274 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.01100 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.88549 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 48.02200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 45.88549 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 48.02200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 45.88549 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 48.02200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 39.73800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -68.82823 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 79.47600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 203 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 A 203 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 204 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 A 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 351 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 371 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 558 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE3 LYS A 131 O HOH A 380 1.22 REMARK 500 O3 SO4 A 204 O HOH A 302 1.40 REMARK 500 O HOH A 511 O HOH A 530 1.65 REMARK 500 CE LYS A 131 O HOH A 380 1.92 REMARK 500 O HOH A 360 O HOH A 510 1.93 REMARK 500 O HOH A 459 O HOH A 529 1.98 REMARK 500 O HOH A 459 O HOH A 460 1.98 REMARK 500 O HOH A 477 O HOH A 494 2.10 REMARK 500 O HOH A 450 O HOH A 476 2.11 REMARK 500 O HOH A 378 O HOH A 537 2.12 REMARK 500 O HOH A 438 O HOH A 469 2.13 REMARK 500 O HOH A 487 O HOH A 540 2.17 REMARK 500 O HOH A 391 O HOH A 516 2.19 REMARK 500 O HOH A 358 O HOH A 508 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4 SO4 A 204 O HOH A 302 3655 1.30 REMARK 500 H3 GLY A -2 OH2 ETE A 201 8544 1.39 REMARK 500 O2 SO4 A 204 O HOH A 302 2545 1.42 REMARK 500 O HOH A 356 O HOH A 438 2545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 22 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 -8.29 74.56 REMARK 500 TYR A 81 -15.16 -145.23 REMARK 500 VAL A 92 74.28 -101.67 REMARK 500 ARG A 108 -148.29 -107.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 573 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 574 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 575 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 576 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 577 DISTANCE = 7.11 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ETE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues SO4 A 203 and SO4 A REMARK 800 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues SO4 A 203 and SO4 A REMARK 800 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues SO4 A 203 and SO4 A REMARK 800 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues SO4 A 203 and SO4 A REMARK 800 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues SO4 A 203 and SO4 A REMARK 800 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues SO4 A 203 and SO4 A REMARK 800 204 DBREF 6HSA A 1 142 UNP D4S0D1 D4S0D1_9FIRM 1 142 SEQADV 6HSA GLY A -2 UNP D4S0D1 EXPRESSION TAG SEQADV 6HSA SER A -1 UNP D4S0D1 EXPRESSION TAG SEQADV 6HSA HIS A 0 UNP D4S0D1 EXPRESSION TAG SEQRES 1 A 145 GLY SER HIS MET LYS ILE LEU VAL ILE ASN GLY PRO ASN SEQRES 2 A 145 LEU ASN PHE LEU GLY ILE ARG GLU LYS ASN ILE TYR GLY SEQRES 3 A 145 ASN GLU ASN TYR GLU TYR LEU VAL ASN MET ILE ASN GLU SEQRES 4 A 145 TYR CYS LYS SER LYS ASN ILE GLU VAL GLU CYS TYR GLN SEQRES 5 A 145 SER ASN HIS GLU GLY ALA ILE ILE ASP LYS ILE GLN GLU SEQRES 6 A 145 ALA TYR PHE ASN GLY THR ASP GLY ILE VAL ILE ASN PRO SEQRES 7 A 145 GLY ALA TYR THR HIS TYR SER TYR ALA ILE ARG ASP ALA SEQRES 8 A 145 LEU ALA SER VAL SER HIS ILE LYS LYS ILE GLU VAL HIS SEQRES 9 A 145 ILE SER ASN VAL ASN GLU ARG GLU GLU PHE ARG HIS ILE SEQRES 10 A 145 SER VAL THR GLU PRO VAL CYS ASN GLY GLN ILE VAL GLY SEQRES 11 A 145 GLN GLY LEU LYS GLY TYR ILE MET ALA ILE ASP MET LEU SEQRES 12 A 145 ASN SER HET ETE A 201 33 HET SER A 202 14 HET SO4 A 203 5 HET SO4 A 204 5 HET FLC A 205 18 HET GOL A 206 14 HETNAM ETE 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM SER SERINE HETNAM SO4 SULFATE ION HETNAM FLC CITRATE ANION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ETE C9 H20 O5 FORMUL 3 SER C3 H7 N O3 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 FLC C6 H5 O7 3- FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *277(H2 O) HELIX 1 AA1 ASN A 10 LEU A 14 5 5 HELIX 2 AA2 GLU A 18 GLY A 23 1 6 HELIX 3 AA3 ASN A 26 LYS A 41 1 16 HELIX 4 AA4 HIS A 52 ASN A 66 1 15 HELIX 5 AA5 PRO A 75 TYR A 81 5 7 HELIX 6 AA6 SER A 82 VAL A 92 1 11 HELIX 7 AA7 ASN A 104 ARG A 108 5 5 HELIX 8 AA8 GLU A 109 HIS A 113 5 5 HELIX 9 AA9 THR A 117 CYS A 121 5 5 HELIX 10 AB1 LEU A 130 ASN A 141 1 12 SHEET 1 AA1 5 GLU A 44 GLN A 49 0 SHEET 2 AA1 5 LYS A 2 ASN A 7 1 N VAL A 5 O GLU A 46 SHEET 3 AA1 5 GLY A 70 ASN A 74 1 O VAL A 72 N ILE A 6 SHEET 4 AA1 5 LYS A 96 HIS A 101 1 O ILE A 98 N ILE A 73 SHEET 5 AA1 5 GLY A 123 VAL A 126 1 O GLY A 123 N GLU A 99 SITE 1 AC1 12 GLY A -2 GLU A 118 PRO A 119 VAL A 120 SITE 2 AC1 12 GOL A 206 HOH A 328 HOH A 331 HOH A 357 SITE 3 AC1 12 HOH A 364 HOH A 459 HOH A 467 HOH A 529 SITE 1 AC2 10 TYR A 64 PHE A 65 ASN A 66 GLY A 67 SITE 2 AC2 10 ASN A 106 GLN A 124 VAL A 126 HOH A 384 SITE 3 AC2 10 HOH A 521 HOH A 577 SITE 1 AC3 13 LEU A 11 ARG A 17 TYR A 22 ASN A 74 SITE 2 AC3 13 GLY A 76 ALA A 77 HIS A 80 HIS A 101 SITE 3 AC3 13 ILE A 102 SER A 103 VAL A 105 ARG A 112 SITE 4 AC3 13 HOH A 349 SITE 1 AC4 10 ARG A 17 GLU A 18 TYR A 22 ASP A 87 SITE 2 AC4 10 ALA A 90 SER A 91 ARG A 112 ETE A 201 SITE 3 AC4 10 HOH A 304 HOH A 331 SITE 1 AC5 4 HIS A 52 GLU A 53 GLY A 54 HOH A 302 SITE 1 AC6 4 HIS A 52 GLU A 53 GLY A 54 HOH A 302 SITE 1 AC7 4 HIS A 52 GLU A 53 GLY A 54 HOH A 302 SITE 1 AC8 4 HIS A 52 GLU A 53 GLY A 54 HOH A 302 SITE 1 AC9 4 HIS A 52 GLU A 53 GLY A 54 HOH A 302 SITE 1 AD1 4 HIS A 52 GLU A 53 GLY A 54 HOH A 302 CRYST1 79.476 79.476 72.033 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012582 0.007264 0.000000 0.00000 SCALE2 0.000000 0.014529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013883 0.00000