data_6HT5 # _entry.id 6HT5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6HT5 pdb_00006ht5 10.2210/pdb6ht5/pdb WWPDB D_1200010326 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-10-23 2 'Structure model' 1 1 2024-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6HT5 _pdbx_database_status.recvd_initial_deposition_date 2018-10-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vahokoski, J.' 1 ? 'Meusch, D.' 2 ? 'Groves, M.' 3 ? 'Pogenberg, V.' 4 0000-0002-1021-6804 'Wilmanns, M.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Oct4/Sox2:UTF1 structure' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vahokoski, J.' 1 ? primary 'Pogenberg, V.' 2 ? primary 'Wilmanns, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*CP*CP*TP*CP*AP*TP*TP*GP*TP*TP*AP*TP*GP*CP*TP*AP*GP*TP*GP*AP*AP*G)-3') ; 6757.376 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*TP*CP*AP*CP*TP*AP*GP*CP*AP*TP*AP*AP*CP*AP*AP*TP*GP*AP*GP*G)-3') ; 6455.212 1 ? ? ? ? 3 polymer man 'Transcription factor SOX-2' 10092.858 1 ? ? ? ? 4 polymer man 'POU domain, class 5, transcription factor 1' 17831.676 1 ? ? ? ? # _entity_name_com.entity_id 4 _entity_name_com.name 'NF-A3,Octamer-binding protein 3,Oct-3,Octamer-binding protein 4,Oct-4,Octamer-binding transcription factor 3,OTF-3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DC)(DC)(DT)(DC)(DA)(DT)(DT)(DG)(DT)(DT)(DA)(DT)(DG)(DC)(DT)(DA)(DG)(DT)(DG)(DA) (DA)(DG) ; CCTCATTGTTATGCTAGTGAAG A ? 2 polydeoxyribonucleotide no no ;(DT)(DT)(DC)(DA)(DC)(DT)(DA)(DG)(DC)(DA)(DT)(DA)(DA)(DC)(DA)(DA)(DT)(DG)(DA)(DG) (DG) ; TTCACTAGCATAACAATGAGG B ? 3 'polypeptide(L)' no no ;GAMDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRK TKT ; ;GAMDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRK TKT ; D ? 4 'polypeptide(L)' no no ;GADMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNE NLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRSS ; ;GADMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNE NLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRSS ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DC n 1 5 DA n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DT n 1 11 DA n 1 12 DT n 1 13 DG n 1 14 DC n 1 15 DT n 1 16 DA n 1 17 DG n 1 18 DT n 1 19 DG n 1 20 DA n 1 21 DA n 1 22 DG n 2 1 DT n 2 2 DT n 2 3 DC n 2 4 DA n 2 5 DC n 2 6 DT n 2 7 DA n 2 8 DG n 2 9 DC n 2 10 DA n 2 11 DT n 2 12 DA n 2 13 DA n 2 14 DC n 2 15 DA n 2 16 DA n 2 17 DT n 2 18 DG n 2 19 DA n 2 20 DG n 2 21 DG n 3 1 GLY n 3 2 ALA n 3 3 MET n 3 4 ASP n 3 5 ARG n 3 6 VAL n 3 7 LYS n 3 8 ARG n 3 9 PRO n 3 10 MET n 3 11 ASN n 3 12 ALA n 3 13 PHE n 3 14 MET n 3 15 VAL n 3 16 TRP n 3 17 SER n 3 18 ARG n 3 19 GLY n 3 20 GLN n 3 21 ARG n 3 22 ARG n 3 23 LYS n 3 24 MET n 3 25 ALA n 3 26 GLN n 3 27 GLU n 3 28 ASN n 3 29 PRO n 3 30 LYS n 3 31 MET n 3 32 HIS n 3 33 ASN n 3 34 SER n 3 35 GLU n 3 36 ILE n 3 37 SER n 3 38 LYS n 3 39 ARG n 3 40 LEU n 3 41 GLY n 3 42 ALA n 3 43 GLU n 3 44 TRP n 3 45 LYS n 3 46 LEU n 3 47 LEU n 3 48 SER n 3 49 GLU n 3 50 THR n 3 51 GLU n 3 52 LYS n 3 53 ARG n 3 54 PRO n 3 55 PHE n 3 56 ILE n 3 57 ASP n 3 58 GLU n 3 59 ALA n 3 60 LYS n 3 61 ARG n 3 62 LEU n 3 63 ARG n 3 64 ALA n 3 65 LEU n 3 66 HIS n 3 67 MET n 3 68 LYS n 3 69 GLU n 3 70 HIS n 3 71 PRO n 3 72 ASP n 3 73 TYR n 3 74 LYS n 3 75 TYR n 3 76 ARG n 3 77 PRO n 3 78 ARG n 3 79 ARG n 3 80 LYS n 3 81 THR n 3 82 LYS n 3 83 THR n 4 1 GLY n 4 2 ALA n 4 3 ASP n 4 4 MET n 4 5 LYS n 4 6 ALA n 4 7 LEU n 4 8 GLN n 4 9 LYS n 4 10 GLU n 4 11 LEU n 4 12 GLU n 4 13 GLN n 4 14 PHE n 4 15 ALA n 4 16 LYS n 4 17 LEU n 4 18 LEU n 4 19 LYS n 4 20 GLN n 4 21 LYS n 4 22 ARG n 4 23 ILE n 4 24 THR n 4 25 LEU n 4 26 GLY n 4 27 TYR n 4 28 THR n 4 29 GLN n 4 30 ALA n 4 31 ASP n 4 32 VAL n 4 33 GLY n 4 34 LEU n 4 35 THR n 4 36 LEU n 4 37 GLY n 4 38 VAL n 4 39 LEU n 4 40 PHE n 4 41 GLY n 4 42 LYS n 4 43 VAL n 4 44 PHE n 4 45 SER n 4 46 GLN n 4 47 THR n 4 48 THR n 4 49 ILE n 4 50 SER n 4 51 ARG n 4 52 PHE n 4 53 GLU n 4 54 ALA n 4 55 LEU n 4 56 GLN n 4 57 LEU n 4 58 SER n 4 59 LEU n 4 60 LYS n 4 61 ASN n 4 62 MET n 4 63 SER n 4 64 LYS n 4 65 LEU n 4 66 ARG n 4 67 PRO n 4 68 LEU n 4 69 LEU n 4 70 GLU n 4 71 LYS n 4 72 TRP n 4 73 VAL n 4 74 GLU n 4 75 GLU n 4 76 ALA n 4 77 ASP n 4 78 ASN n 4 79 ASN n 4 80 GLU n 4 81 ASN n 4 82 LEU n 4 83 GLN n 4 84 GLU n 4 85 ILE n 4 86 SER n 4 87 LYS n 4 88 SER n 4 89 GLU n 4 90 THR n 4 91 LEU n 4 92 VAL n 4 93 GLN n 4 94 ALA n 4 95 ARG n 4 96 LYS n 4 97 ARG n 4 98 LYS n 4 99 ARG n 4 100 THR n 4 101 SER n 4 102 ILE n 4 103 GLU n 4 104 ASN n 4 105 ARG n 4 106 VAL n 4 107 ARG n 4 108 TRP n 4 109 SER n 4 110 LEU n 4 111 GLU n 4 112 THR n 4 113 MET n 4 114 PHE n 4 115 LEU n 4 116 LYS n 4 117 SER n 4 118 PRO n 4 119 LYS n 4 120 PRO n 4 121 SER n 4 122 LEU n 4 123 GLN n 4 124 GLN n 4 125 ILE n 4 126 THR n 4 127 HIS n 4 128 ILE n 4 129 ALA n 4 130 ASN n 4 131 GLN n 4 132 LEU n 4 133 GLY n 4 134 LEU n 4 135 GLU n 4 136 LYS n 4 137 ASP n 4 138 VAL n 4 139 VAL n 4 140 ARG n 4 141 VAL n 4 142 TRP n 4 143 PHE n 4 144 SER n 4 145 ASN n 4 146 ARG n 4 147 ARG n 4 148 GLN n 4 149 LYS n 4 150 GLY n 4 151 LYS n 4 152 ARG n 4 153 SER n 4 154 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 3 1 sample 'Biological sequence' 1 83 Mouse ? 'Sox2, Sox-2' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample 'Biological sequence' 1 154 Mouse ? 'Pou5f1, Oct-3, Oct-4, Otf-3, Otf3' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 22 'Mus musculus' ? 10090 ? 2 1 sample 1 21 'Mus musculus' ? 10090 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 -1 -1 DC DC A . n A 1 2 DC 2 0 0 DC DC A . n A 1 3 DT 3 1 1 DT DT A . n A 1 4 DC 4 2 2 DC DC A . n A 1 5 DA 5 3 3 DA DA A . n A 1 6 DT 6 4 4 DT DT A . n A 1 7 DT 7 5 5 DT DT A . n A 1 8 DG 8 6 6 DG DG A . n A 1 9 DT 9 7 7 DT DT A . n A 1 10 DT 10 8 8 DT DT A . n A 1 11 DA 11 9 9 DA DA A . n A 1 12 DT 12 10 10 DT DT A . n A 1 13 DG 13 11 11 DG DG A . n A 1 14 DC 14 12 12 DC DC A . n A 1 15 DT 15 13 13 DT DT A . n A 1 16 DA 16 14 14 DA DA A . n A 1 17 DG 17 15 15 DG DG A . n A 1 18 DT 18 16 16 DT DT A . n A 1 19 DG 19 17 17 DG DG A . n A 1 20 DA 20 18 18 DA DA A . n A 1 21 DA 21 19 19 DA DA A . n A 1 22 DG 22 20 20 DG DG A . n B 2 1 DT 1 0 0 DT DT B . n B 2 2 DT 2 1 1 DT DT B . n B 2 3 DC 3 2 2 DC DC B . n B 2 4 DA 4 3 3 DA DA B . n B 2 5 DC 5 4 4 DC DC B . n B 2 6 DT 6 5 5 DT DT B . n B 2 7 DA 7 6 6 DA DA B . n B 2 8 DG 8 7 7 DG DG B . n B 2 9 DC 9 8 8 DC DC B . n B 2 10 DA 10 9 9 DA DA B . n B 2 11 DT 11 10 10 DT DT B . n B 2 12 DA 12 11 11 DA DA B . n B 2 13 DA 13 12 12 DA DA B . n B 2 14 DC 14 13 13 DC DC B . n B 2 15 DA 15 14 14 DA DA B . n B 2 16 DA 16 15 15 DA DA B . n B 2 17 DT 17 16 16 DT DT B . n B 2 18 DG 18 17 17 DG DG B . n B 2 19 DA 19 18 18 DA DA B . n B 2 20 DG 20 19 19 DG DG B . n B 2 21 DG 21 20 20 DG DG B . n C 3 1 GLY 1 41 ? ? ? D . n C 3 2 ALA 2 42 ? ? ? D . n C 3 3 MET 3 43 ? ? ? D . n C 3 4 ASP 4 44 1 ASP ASP D . n C 3 5 ARG 5 45 2 ARG ARG D . n C 3 6 VAL 6 46 3 VAL VAL D . n C 3 7 LYS 7 47 4 LYS LYS D . n C 3 8 ARG 8 48 5 ARG ARG D . n C 3 9 PRO 9 49 6 PRO PRO D . n C 3 10 MET 10 50 7 MET MET D . n C 3 11 ASN 11 51 8 ASN ASN D . n C 3 12 ALA 12 52 9 ALA ALA D . n C 3 13 PHE 13 53 10 PHE PHE D . n C 3 14 MET 14 54 11 MET MET D . n C 3 15 VAL 15 55 12 VAL VAL D . n C 3 16 TRP 16 56 13 TRP TRP D . n C 3 17 SER 17 57 14 SER SER D . n C 3 18 ARG 18 58 15 ARG ARG D . n C 3 19 GLY 19 59 16 GLY GLY D . n C 3 20 GLN 20 60 17 GLN GLN D . n C 3 21 ARG 21 61 18 ARG ARG D . n C 3 22 ARG 22 62 19 ARG ARG D . n C 3 23 LYS 23 63 20 LYS LYS D . n C 3 24 MET 24 64 21 MET MET D . n C 3 25 ALA 25 65 22 ALA ALA D . n C 3 26 GLN 26 66 23 GLN GLN D . n C 3 27 GLU 27 67 24 GLU GLU D . n C 3 28 ASN 28 68 25 ASN ASN D . n C 3 29 PRO 29 69 26 PRO PRO D . n C 3 30 LYS 30 70 27 LYS LYS D . n C 3 31 MET 31 71 28 MET MET D . n C 3 32 HIS 32 72 29 HIS HIS D . n C 3 33 ASN 33 73 30 ASN ASN D . n C 3 34 SER 34 74 31 SER SER D . n C 3 35 GLU 35 75 32 GLU GLU D . n C 3 36 ILE 36 76 33 ILE ILE D . n C 3 37 SER 37 77 34 SER SER D . n C 3 38 LYS 38 78 35 LYS LYS D . n C 3 39 ARG 39 79 36 ARG ARG D . n C 3 40 LEU 40 80 37 LEU LEU D . n C 3 41 GLY 41 81 38 GLY GLY D . n C 3 42 ALA 42 82 39 ALA ALA D . n C 3 43 GLU 43 83 40 GLU GLU D . n C 3 44 TRP 44 84 41 TRP TRP D . n C 3 45 LYS 45 85 42 LYS LYS D . n C 3 46 LEU 46 86 43 LEU LEU D . n C 3 47 LEU 47 87 44 LEU LEU D . n C 3 48 SER 48 88 45 SER SER D . n C 3 49 GLU 49 89 46 GLU GLU D . n C 3 50 THR 50 90 47 THR THR D . n C 3 51 GLU 51 91 48 GLU GLU D . n C 3 52 LYS 52 92 49 LYS LYS D . n C 3 53 ARG 53 93 50 ARG ARG D . n C 3 54 PRO 54 94 51 PRO PRO D . n C 3 55 PHE 55 95 52 PHE PHE D . n C 3 56 ILE 56 96 53 ILE ILE D . n C 3 57 ASP 57 97 54 ASP ASP D . n C 3 58 GLU 58 98 55 GLU GLU D . n C 3 59 ALA 59 99 56 ALA ALA D . n C 3 60 LYS 60 100 57 LYS LYS D . n C 3 61 ARG 61 101 58 ARG ARG D . n C 3 62 LEU 62 102 59 LEU LEU D . n C 3 63 ARG 63 103 60 ARG ARG D . n C 3 64 ALA 64 104 61 ALA ALA D . n C 3 65 LEU 65 105 62 LEU LEU D . n C 3 66 HIS 66 106 63 HIS HIS D . n C 3 67 MET 67 107 64 MET MET D . n C 3 68 LYS 68 108 65 LYS LYS D . n C 3 69 GLU 69 109 66 GLU GLU D . n C 3 70 HIS 70 110 67 HIS HIS D . n C 3 71 PRO 71 111 68 PRO PRO D . n C 3 72 ASP 72 112 69 ASP ASP D . n C 3 73 TYR 73 113 70 TYR TYR D . n C 3 74 LYS 74 114 71 LYS LYS D . n C 3 75 TYR 75 115 72 TYR TYR D . n C 3 76 ARG 76 116 73 ARG ARG D . n C 3 77 PRO 77 117 74 PRO PRO D . n C 3 78 ARG 78 118 75 ARG ARG D . n C 3 79 ARG 79 119 76 ARG ARG D . n C 3 80 LYS 80 120 77 LYS LYS D . n C 3 81 THR 81 121 ? ? ? D . n C 3 82 LYS 82 122 ? ? ? D . n C 3 83 THR 83 123 ? ? ? D . n D 4 1 GLY 1 131 -1 GLY GLY E . n D 4 2 ALA 2 132 0 ALA ALA E . n D 4 3 ASP 3 133 1 ASP ASP E . n D 4 4 MET 4 134 2 MET MET E . n D 4 5 LYS 5 135 3 LYS LYS E . n D 4 6 ALA 6 136 4 ALA ALA E . n D 4 7 LEU 7 137 5 LEU LEU E . n D 4 8 GLN 8 138 6 GLN GLN E . n D 4 9 LYS 9 139 7 LYS LYS E . n D 4 10 GLU 10 140 8 GLU GLU E . n D 4 11 LEU 11 141 9 LEU LEU E . n D 4 12 GLU 12 142 10 GLU GLU E . n D 4 13 GLN 13 143 11 GLN GLN E . n D 4 14 PHE 14 144 12 PHE PHE E . n D 4 15 ALA 15 145 13 ALA ALA E . n D 4 16 LYS 16 146 14 LYS LYS E . n D 4 17 LEU 17 147 15 LEU LEU E . n D 4 18 LEU 18 148 16 LEU LEU E . n D 4 19 LYS 19 149 17 LYS LYS E . n D 4 20 GLN 20 150 18 GLN GLN E . n D 4 21 LYS 21 151 19 LYS LYS E . n D 4 22 ARG 22 152 20 ARG ARG E . n D 4 23 ILE 23 153 21 ILE ILE E . n D 4 24 THR 24 154 22 THR THR E . n D 4 25 LEU 25 155 23 LEU LEU E . n D 4 26 GLY 26 156 24 GLY GLY E . n D 4 27 TYR 27 157 25 TYR TYR E . n D 4 28 THR 28 158 26 THR THR E . n D 4 29 GLN 29 159 27 GLN GLN E . n D 4 30 ALA 30 160 28 ALA ALA E . n D 4 31 ASP 31 161 29 ASP ASP E . n D 4 32 VAL 32 162 30 VAL VAL E . n D 4 33 GLY 33 163 31 GLY GLY E . n D 4 34 LEU 34 164 32 LEU LEU E . n D 4 35 THR 35 165 33 THR THR E . n D 4 36 LEU 36 166 34 LEU LEU E . n D 4 37 GLY 37 167 35 GLY GLY E . n D 4 38 VAL 38 168 36 VAL VAL E . n D 4 39 LEU 39 169 37 LEU LEU E . n D 4 40 PHE 40 170 38 PHE PHE E . n D 4 41 GLY 41 171 39 GLY GLY E . n D 4 42 LYS 42 172 40 LYS LYS E . n D 4 43 VAL 43 173 41 VAL VAL E . n D 4 44 PHE 44 174 42 PHE PHE E . n D 4 45 SER 45 175 43 SER SER E . n D 4 46 GLN 46 176 44 GLN GLN E . n D 4 47 THR 47 177 45 THR THR E . n D 4 48 THR 48 178 46 THR THR E . n D 4 49 ILE 49 179 47 ILE ILE E . n D 4 50 SER 50 180 48 SER SER E . n D 4 51 ARG 51 181 49 ARG ARG E . n D 4 52 PHE 52 182 50 PHE PHE E . n D 4 53 GLU 53 183 51 GLU GLU E . n D 4 54 ALA 54 184 52 ALA ALA E . n D 4 55 LEU 55 185 53 LEU LEU E . n D 4 56 GLN 56 186 54 GLN GLN E . n D 4 57 LEU 57 187 55 LEU LEU E . n D 4 58 SER 58 188 56 SER SER E . n D 4 59 LEU 59 189 57 LEU LEU E . n D 4 60 LYS 60 190 58 LYS LYS E . n D 4 61 ASN 61 191 59 ASN ASN E . n D 4 62 MET 62 192 60 MET MET E . n D 4 63 SER 63 193 61 SER SER E . n D 4 64 LYS 64 194 62 LYS LYS E . n D 4 65 LEU 65 195 63 LEU LEU E . n D 4 66 ARG 66 196 64 ARG ARG E . n D 4 67 PRO 67 197 65 PRO PRO E . n D 4 68 LEU 68 198 66 LEU LEU E . n D 4 69 LEU 69 199 67 LEU LEU E . n D 4 70 GLU 70 200 68 GLU GLU E . n D 4 71 LYS 71 201 69 LYS LYS E . n D 4 72 TRP 72 202 70 TRP TRP E . n D 4 73 VAL 73 203 71 VAL VAL E . n D 4 74 GLU 74 204 72 GLU GLU E . n D 4 75 GLU 75 205 73 GLU GLU E . n D 4 76 ALA 76 206 74 ALA ALA E . n D 4 77 ASP 77 207 75 ASP ASP E . n D 4 78 ASN 78 208 76 ASN ASN E . n D 4 79 ASN 79 209 77 ASN ASN E . n D 4 80 GLU 80 210 78 GLU GLU E . n D 4 81 ASN 81 211 79 ASN ASN E . n D 4 82 LEU 82 212 80 LEU LEU E . n D 4 83 GLN 83 213 81 GLN GLN E . n D 4 84 GLU 84 214 82 GLU GLU E . n D 4 85 ILE 85 215 83 ILE ILE E . n D 4 86 SER 86 216 84 SER SER E . n D 4 87 LYS 87 217 85 LYS LYS E . n D 4 88 SER 88 218 86 SER SER E . n D 4 89 GLU 89 219 87 GLU GLU E . n D 4 90 THR 90 220 88 THR THR E . n D 4 91 LEU 91 221 89 LEU LEU E . n D 4 92 VAL 92 222 90 VAL VAL E . n D 4 93 GLN 93 223 91 GLN GLN E . n D 4 94 ALA 94 224 92 ALA ALA E . n D 4 95 ARG 95 225 93 ARG ARG E . n D 4 96 LYS 96 226 94 LYS LYS E . n D 4 97 ARG 97 227 95 ARG ARG E . n D 4 98 LYS 98 228 96 LYS LYS E . n D 4 99 ARG 99 229 97 ARG ARG E . n D 4 100 THR 100 230 98 THR THR E . n D 4 101 SER 101 231 99 SER SER E . n D 4 102 ILE 102 232 ? ? ? E . n D 4 103 GLU 103 233 ? ? ? E . n D 4 104 ASN 104 234 ? ? ? E . n D 4 105 ARG 105 235 ? ? ? E . n D 4 106 VAL 106 236 ? ? ? E . n D 4 107 ARG 107 237 ? ? ? E . n D 4 108 TRP 108 238 ? ? ? E . n D 4 109 SER 109 239 ? ? ? E . n D 4 110 LEU 110 240 ? ? ? E . n D 4 111 GLU 111 241 ? ? ? E . n D 4 112 THR 112 242 ? ? ? E . n D 4 113 MET 113 243 ? ? ? E . n D 4 114 PHE 114 244 ? ? ? E . n D 4 115 LEU 115 245 ? ? ? E . n D 4 116 LYS 116 246 ? ? ? E . n D 4 117 SER 117 247 ? ? ? E . n D 4 118 PRO 118 248 ? ? ? E . n D 4 119 LYS 119 249 ? ? ? E . n D 4 120 PRO 120 250 ? ? ? E . n D 4 121 SER 121 251 ? ? ? E . n D 4 122 LEU 122 252 ? ? ? E . n D 4 123 GLN 123 253 ? ? ? E . n D 4 124 GLN 124 254 ? ? ? E . n D 4 125 ILE 125 255 ? ? ? E . n D 4 126 THR 126 256 ? ? ? E . n D 4 127 HIS 127 257 ? ? ? E . n D 4 128 ILE 128 258 ? ? ? E . n D 4 129 ALA 129 259 ? ? ? E . n D 4 130 ASN 130 260 ? ? ? E . n D 4 131 GLN 131 261 ? ? ? E . n D 4 132 LEU 132 262 ? ? ? E . n D 4 133 GLY 133 263 ? ? ? E . n D 4 134 LEU 134 264 ? ? ? E . n D 4 135 GLU 135 265 ? ? ? E . n D 4 136 LYS 136 266 ? ? ? E . n D 4 137 ASP 137 267 ? ? ? E . n D 4 138 VAL 138 268 ? ? ? E . n D 4 139 VAL 139 269 ? ? ? E . n D 4 140 ARG 140 270 ? ? ? E . n D 4 141 VAL 141 271 ? ? ? E . n D 4 142 TRP 142 272 ? ? ? E . n D 4 143 PHE 143 273 ? ? ? E . n D 4 144 SER 144 274 ? ? ? E . n D 4 145 ASN 145 275 ? ? ? E . n D 4 146 ARG 146 276 ? ? ? E . n D 4 147 ARG 147 277 ? ? ? E . n D 4 148 GLN 148 278 ? ? ? E . n D 4 149 LYS 149 279 ? ? ? E . n D 4 150 GLY 150 280 ? ? ? E . n D 4 151 LYS 151 281 ? ? ? E . n D 4 152 ARG 152 282 ? ? ? E . n D 4 153 SER 153 283 ? ? ? E . n D 4 154 SER 154 284 ? ? ? E . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DT 0 ? "O5'" ? B DT 1 "O5'" 2 1 Y 1 D LYS 47 ? CG ? C LYS 7 CG 3 1 Y 1 D LYS 47 ? CD ? C LYS 7 CD 4 1 Y 1 D LYS 47 ? CE ? C LYS 7 CE 5 1 Y 1 D LYS 47 ? NZ ? C LYS 7 NZ 6 1 Y 1 D LYS 70 ? CG ? C LYS 30 CG 7 1 Y 1 D LYS 70 ? CD ? C LYS 30 CD 8 1 Y 1 D LYS 70 ? CE ? C LYS 30 CE 9 1 Y 1 D LYS 70 ? NZ ? C LYS 30 NZ 10 1 Y 1 D GLU 75 ? CG ? C GLU 35 CG 11 1 Y 1 D GLU 75 ? CD ? C GLU 35 CD 12 1 Y 1 D GLU 75 ? OE1 ? C GLU 35 OE1 13 1 Y 1 D GLU 75 ? OE2 ? C GLU 35 OE2 14 1 Y 1 D LYS 108 ? CG ? C LYS 68 CG 15 1 Y 1 D LYS 108 ? CD ? C LYS 68 CD 16 1 Y 1 D LYS 108 ? CE ? C LYS 68 CE 17 1 Y 1 D LYS 108 ? NZ ? C LYS 68 NZ 18 1 Y 1 E LYS 135 ? CG ? D LYS 5 CG 19 1 Y 1 E LYS 135 ? CD ? D LYS 5 CD 20 1 Y 1 E LYS 135 ? CE ? D LYS 5 CE 21 1 Y 1 E LYS 135 ? NZ ? D LYS 5 NZ 22 1 Y 1 E LYS 139 ? CG ? D LYS 9 CG 23 1 Y 1 E LYS 139 ? CD ? D LYS 9 CD 24 1 Y 1 E LYS 139 ? CE ? D LYS 9 CE 25 1 Y 1 E LYS 139 ? NZ ? D LYS 9 NZ 26 1 Y 1 E GLU 140 ? CG ? D GLU 10 CG 27 1 Y 1 E GLU 140 ? CD ? D GLU 10 CD 28 1 Y 1 E GLU 140 ? OE1 ? D GLU 10 OE1 29 1 Y 1 E GLU 140 ? OE2 ? D GLU 10 OE2 30 1 Y 1 E GLU 142 ? O ? D GLU 12 O 31 1 Y 1 E LYS 172 ? CG ? D LYS 42 CG 32 1 Y 1 E LYS 172 ? CD ? D LYS 42 CD 33 1 Y 1 E LYS 172 ? CE ? D LYS 42 CE 34 1 Y 1 E LYS 172 ? NZ ? D LYS 42 NZ 35 1 Y 1 E LEU 185 ? O ? D LEU 55 O 36 1 Y 1 E LYS 190 ? CE ? D LYS 60 CE 37 1 Y 1 E LYS 190 ? NZ ? D LYS 60 NZ 38 1 Y 1 E LYS 194 ? CD ? D LYS 64 CD 39 1 Y 1 E LYS 194 ? CE ? D LYS 64 CE 40 1 Y 1 E LYS 194 ? NZ ? D LYS 64 NZ 41 1 Y 1 E LYS 201 ? CE ? D LYS 71 CE 42 1 Y 1 E LYS 201 ? NZ ? D LYS 71 NZ 43 1 Y 1 E LYS 217 ? CG ? D LYS 87 CG 44 1 Y 1 E LYS 217 ? CD ? D LYS 87 CD 45 1 Y 1 E LYS 217 ? CE ? D LYS 87 CE 46 1 Y 1 E LYS 217 ? NZ ? D LYS 87 NZ 47 1 Y 1 E LYS 226 ? CG ? D LYS 96 CG 48 1 Y 1 E LYS 226 ? CD ? D LYS 96 CD 49 1 Y 1 E LYS 226 ? CE ? D LYS 96 CE 50 1 Y 1 E LYS 226 ? NZ ? D LYS 96 NZ 51 1 Y 1 E ARG 227 ? CG ? D ARG 97 CG 52 1 Y 1 E ARG 227 ? CD ? D ARG 97 CD 53 1 Y 1 E ARG 227 ? NE ? D ARG 97 NE 54 1 Y 1 E ARG 227 ? CZ ? D ARG 97 CZ 55 1 Y 1 E ARG 227 ? NH1 ? D ARG 97 NH1 56 1 Y 1 E ARG 227 ? NH2 ? D ARG 97 NH2 57 1 Y 1 E LYS 228 ? CD ? D LYS 98 CD 58 1 Y 1 E LYS 228 ? CE ? D LYS 98 CE 59 1 Y 1 E LYS 228 ? NZ ? D LYS 98 NZ 60 1 Y 1 E ARG 229 ? CG ? D ARG 99 CG 61 1 Y 1 E ARG 229 ? CD ? D ARG 99 CD 62 1 Y 1 E ARG 229 ? NE ? D ARG 99 NE 63 1 Y 1 E ARG 229 ? CZ ? D ARG 99 CZ 64 1 Y 1 E ARG 229 ? NH1 ? D ARG 99 NH1 65 1 Y 1 E ARG 229 ? NH2 ? D ARG 99 NH2 66 1 Y 1 E SER 231 ? OG ? D SER 101 OG # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.13_2998: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6HT5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 165.170 _cell.length_a_esd ? _cell.length_b 165.170 _cell.length_b_esd ? _cell.length_c 39.780 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6HT5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.8 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 67.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM 4-morpholineethanesulfonic acid at pH 6.0, 33% v/v 2-methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type MARRESEARCH _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2009-10-30 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8726 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.8726 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6HT5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.45 _reflns.d_resolution_low 48.62 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8480 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.1 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.45 _reflns_shell.d_res_low 3.60 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.998 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6HT5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.451 _refine.ls_d_res_low 47.680 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8479 _refine.ls_number_reflns_R_free 683 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.76 _refine.ls_percent_reflns_R_free 8.06 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2050 _refine.ls_R_factor_R_free 0.2484 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2011 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1O4X _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.21 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.44 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1408 _refine_hist.pdbx_number_atoms_nucleic_acid 879 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2287 _refine_hist.d_res_high 3.451 _refine_hist.d_res_low 47.680 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 2415 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.647 ? 3438 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 21.649 ? 1313 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.034 ? 383 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 291 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.4515 3.7179 . . 134 1523 100.00 . . . 0.3485 . 0.2743 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7179 4.0918 . . 134 1543 100.00 . . . 0.3047 . 0.2331 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.0918 4.6835 . . 137 1544 100.00 . . . 0.2531 . 0.1952 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.6835 5.8990 . . 136 1568 100.00 . . . 0.2912 . 0.2080 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.8990 47.6850 . . 142 1618 99.00 . . . 0.1935 . 0.1742 . . . . . . . . . . # _struct.entry_id 6HT5 _struct.title 'Oct4/Sox2:UTF1 structure' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6HT5 _struct_keywords.text 'Cell reprogramming, transcription factor, DNA binding, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6HT5 6HT5 ? 1 ? 1 2 PDB 6HT5 6HT5 ? 2 ? 1 3 UNP SOX2_MOUSE P48432 ? 3 ;DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT ; 41 4 UNP PO5F1_MOUSE P20263 ? 4 ;DMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSLKNMCKLRPLLEKWVEEADNNENL QEICKSETLVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRSS ; 131 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6HT5 A 1 ? 22 ? 6HT5 -1 ? 20 ? -1 20 2 2 6HT5 B 1 ? 21 ? 6HT5 0 ? 20 ? 0 20 3 3 6HT5 D 4 ? 83 ? P48432 41 ? 120 ? 44 123 4 4 6HT5 E 3 ? 154 ? P20263 131 ? 282 ? 133 284 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 6HT5 GLY D 1 ? UNP P48432 ? ? 'expression tag' 41 1 3 6HT5 ALA D 2 ? UNP P48432 ? ? 'expression tag' 42 2 3 6HT5 MET D 3 ? UNP P48432 ? ? 'expression tag' 43 3 4 6HT5 GLY E 1 ? UNP P20263 ? ? 'expression tag' 131 4 4 6HT5 ALA E 2 ? UNP P20263 ? ? 'expression tag' 132 5 4 6HT5 SER E 50 ? UNP P20263 CYS 178 'engineered mutation' 180 6 4 6HT5 SER E 63 ? UNP P20263 CYS 191 'engineered mutation' 193 7 4 6HT5 SER E 86 ? UNP P20263 CYS 214 'engineered mutation' 216 8 4 6HT5 SER E 117 ? UNP P20263 CYS 245 'engineered mutation' 247 9 4 6HT5 SER E 144 ? UNP P20263 CYS 272 'engineered mutation' 274 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6710 ? 1 MORE -27 ? 1 'SSA (A^2)' 17040 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN C 11 ? ASN C 28 ? ASN D 51 ASN D 68 1 ? 18 HELX_P HELX_P2 AA2 HIS C 32 ? LEU C 46 ? HIS D 72 LEU D 86 1 ? 15 HELX_P HELX_P3 AA3 SER C 48 ? HIS C 70 ? SER D 88 HIS D 110 1 ? 23 HELX_P HELX_P4 AA4 ASP D 3 ? LEU D 25 ? ASP E 133 LEU E 155 1 ? 23 HELX_P HELX_P5 AA5 THR D 28 ? GLY D 41 ? THR E 158 GLY E 171 1 ? 14 HELX_P HELX_P6 AA6 SER D 45 ? ALA D 54 ? SER E 175 ALA E 184 1 ? 10 HELX_P HELX_P7 AA7 SER D 58 ? SER D 101 ? SER E 188 SER E 231 1 ? 44 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 21 O6 ? ? A DC -1 B DG 20 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 20 N1 ? ? A DC 0 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 20 O6 ? ? A DC 0 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 20 N2 ? ? A DC 0 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 19 N1 ? ? A DT 1 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 19 N6 ? ? A DT 1 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 18 N1 ? ? A DC 2 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 18 O6 ? ? A DC 2 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 18 N2 ? ? A DC 2 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 17 N3 ? ? A DA 3 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 17 O4 ? ? A DA 3 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 16 N1 ? ? A DT 4 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 16 N6 ? ? A DT 4 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 15 N1 ? ? A DT 5 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 15 N6 ? ? A DT 5 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 6 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 6 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 6 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 13 N1 ? ? A DT 7 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 7 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 8 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 8 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 11 N3 ? ? A DA 9 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 11 O4 ? ? A DA 9 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 10 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 10 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 11 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 11 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 11 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 14 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 12 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 12 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 14 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 12 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 13 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 13 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 14 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 16 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 14 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 17 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 15 B DC 4 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog38 hydrog ? ? A DT 18 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 16 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 18 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 16 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 19 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 17 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 19 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 17 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 19 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 17 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DA 20 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 18 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DA 20 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 18 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 19 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 19 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DT _pdbx_validate_rmsd_angle.auth_seq_id_1 10 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DT _pdbx_validate_rmsd_angle.auth_seq_id_2 10 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DT _pdbx_validate_rmsd_angle.auth_seq_id_3 10 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.22 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 1.92 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN D 51 ? ? -77.91 -167.18 2 1 PRO D 69 ? ? -69.14 -173.56 3 1 LYS D 70 ? ? 58.40 16.37 4 1 GLN E 186 ? ? -99.72 31.77 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 32.4340 50.5346 2.0900 2.2741 1.3438 2.5186 -0.0536 -0.2459 0.1581 6.3861 0.9513 5.3647 -2.2180 -5.5155 2.1387 -0.0912 1.4253 -1.8331 3.9639 -0.0389 0.4057 4.7930 -2.0566 0.2988 'X-RAY DIFFRACTION' 2 ? refined 17.0274 62.5789 6.0650 1.3794 0.9764 1.3297 -0.0215 0.1461 -0.0583 6.4922 4.0871 5.3724 2.0418 -0.2782 -3.2615 1.0568 -0.3507 -0.2825 0.5390 -0.4326 1.4936 1.6029 0.0744 -0.6633 'X-RAY DIFFRACTION' 3 ? refined -11.1171 60.4698 12.9915 1.7372 2.0629 2.8153 -0.1466 0.4940 -0.0995 6.6441 9.0570 8.6353 2.0084 -1.4975 0.7920 -0.9899 0.5013 -0.7176 1.9475 -0.8084 2.1269 1.9573 -0.3567 1.6331 'X-RAY DIFFRACTION' 4 ? refined -10.0743 54.6812 9.7545 1.8187 1.4162 3.1678 -0.0456 -0.0261 -0.2915 5.1738 3.7361 1.9023 -4.2727 0.1555 0.4313 0.2729 1.5947 -2.7420 -2.1510 -0.8430 0.9706 0.4443 0.6069 0.1614 'X-RAY DIFFRACTION' 5 ? refined 23.3768 59.1424 4.4679 1.3471 1.2626 1.4813 0.2747 0.0595 0.0344 3.3000 3.8088 4.7688 1.9095 -1.5414 0.4229 -0.7152 -1.1942 -1.6778 0.6827 0.0994 -0.2886 1.1340 0.5740 0.5314 'X-RAY DIFFRACTION' 6 ? refined 37.9446 65.2433 0.4146 1.0626 1.0924 0.9537 0.0641 0.1382 -0.1740 3.8414 6.6216 5.5177 0.6568 0.1505 -0.8703 1.4121 1.5270 -1.0291 -0.2938 -0.6969 -1.0675 0.7978 0.9780 -0.6635 'X-RAY DIFFRACTION' 7 ? refined 37.4273 67.2901 11.2200 1.8741 1.1038 0.1722 0.2347 -0.1190 0.2133 7.8128 5.4035 5.1552 3.8498 2.7414 5.2136 0.4347 0.2434 -1.7887 2.4182 0.8571 -0.5657 0.8810 0.7324 -0.0920 'X-RAY DIFFRACTION' 8 ? refined 28.7473 77.3869 -1.9889 1.0779 1.1042 0.7637 0.2626 0.1834 -0.0309 6.4619 5.0591 5.0514 3.5249 5.6403 2.6347 -1.0478 1.1782 1.9575 -0.2315 -1.1506 0.0412 -0.3381 0.5899 1.3170 'X-RAY DIFFRACTION' 9 ? refined 17.6796 61.1913 -6.2260 1.0202 1.2864 1.1973 0.0699 0.1042 -0.2187 7.5677 5.1533 4.8644 -0.9862 4.3849 -3.9843 0.3844 1.7193 -1.1176 -1.8093 0.1125 1.9872 1.3342 0.1789 -0.1435 'X-RAY DIFFRACTION' 10 ? refined 5.4810 76.0006 -9.9153 0.8766 1.1538 1.1258 0.1140 0.1041 0.1656 3.8077 3.4986 5.4333 -2.7810 3.0529 0.1490 1.4972 1.9778 0.3761 -0.6779 -0.6923 0.3021 0.6354 0.0723 -0.7506 'X-RAY DIFFRACTION' 11 ? refined 14.3488 83.8685 0.1838 0.8186 0.8871 1.0218 0.0427 0.0436 -0.2411 3.9857 5.2493 2.3547 -3.3090 0.1138 -0.5466 -0.0065 -0.3541 1.1234 0.3596 0.1818 0.0499 -0.2939 0.3505 -0.3388 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid -1 through 3 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 4 through 13 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 14 through 20 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 0 through 4 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 5 through 20 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 1 through 29 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 30 through 45 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 46 through 66 ) ; 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 67 through 77 ) ; 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? ;chain 'E' and (resid -1 through 23 ) ; 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? ;chain 'E' and (resid 24 through 99 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D GLY 41 ? C GLY 1 2 1 Y 1 D ALA 42 ? C ALA 2 3 1 Y 1 D MET 43 ? C MET 3 4 1 Y 1 D THR 121 ? C THR 81 5 1 Y 1 D LYS 122 ? C LYS 82 6 1 Y 1 D THR 123 ? C THR 83 7 1 Y 1 E ILE 232 ? D ILE 102 8 1 Y 1 E GLU 233 ? D GLU 103 9 1 Y 1 E ASN 234 ? D ASN 104 10 1 Y 1 E ARG 235 ? D ARG 105 11 1 Y 1 E VAL 236 ? D VAL 106 12 1 Y 1 E ARG 237 ? D ARG 107 13 1 Y 1 E TRP 238 ? D TRP 108 14 1 Y 1 E SER 239 ? D SER 109 15 1 Y 1 E LEU 240 ? D LEU 110 16 1 Y 1 E GLU 241 ? D GLU 111 17 1 Y 1 E THR 242 ? D THR 112 18 1 Y 1 E MET 243 ? D MET 113 19 1 Y 1 E PHE 244 ? D PHE 114 20 1 Y 1 E LEU 245 ? D LEU 115 21 1 Y 1 E LYS 246 ? D LYS 116 22 1 Y 1 E SER 247 ? D SER 117 23 1 Y 1 E PRO 248 ? D PRO 118 24 1 Y 1 E LYS 249 ? D LYS 119 25 1 Y 1 E PRO 250 ? D PRO 120 26 1 Y 1 E SER 251 ? D SER 121 27 1 Y 1 E LEU 252 ? D LEU 122 28 1 Y 1 E GLN 253 ? D GLN 123 29 1 Y 1 E GLN 254 ? D GLN 124 30 1 Y 1 E ILE 255 ? D ILE 125 31 1 Y 1 E THR 256 ? D THR 126 32 1 Y 1 E HIS 257 ? D HIS 127 33 1 Y 1 E ILE 258 ? D ILE 128 34 1 Y 1 E ALA 259 ? D ALA 129 35 1 Y 1 E ASN 260 ? D ASN 130 36 1 Y 1 E GLN 261 ? D GLN 131 37 1 Y 1 E LEU 262 ? D LEU 132 38 1 Y 1 E GLY 263 ? D GLY 133 39 1 Y 1 E LEU 264 ? D LEU 134 40 1 Y 1 E GLU 265 ? D GLU 135 41 1 Y 1 E LYS 266 ? D LYS 136 42 1 Y 1 E ASP 267 ? D ASP 137 43 1 Y 1 E VAL 268 ? D VAL 138 44 1 Y 1 E VAL 269 ? D VAL 139 45 1 Y 1 E ARG 270 ? D ARG 140 46 1 Y 1 E VAL 271 ? D VAL 141 47 1 Y 1 E TRP 272 ? D TRP 142 48 1 Y 1 E PHE 273 ? D PHE 143 49 1 Y 1 E SER 274 ? D SER 144 50 1 Y 1 E ASN 275 ? D ASN 145 51 1 Y 1 E ARG 276 ? D ARG 146 52 1 Y 1 E ARG 277 ? D ARG 147 53 1 Y 1 E GLN 278 ? D GLN 148 54 1 Y 1 E LYS 279 ? D LYS 149 55 1 Y 1 E GLY 280 ? D GLY 150 56 1 Y 1 E LYS 281 ? D LYS 151 57 1 Y 1 E ARG 282 ? D ARG 152 58 1 Y 1 E SER 283 ? D SER 153 59 1 Y 1 E SER 284 ? D SER 154 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TRP N N N N 461 TRP CA C N S 462 TRP C C N N 463 TRP O O N N 464 TRP CB C N N 465 TRP CG C Y N 466 TRP CD1 C Y N 467 TRP CD2 C Y N 468 TRP NE1 N Y N 469 TRP CE2 C Y N 470 TRP CE3 C Y N 471 TRP CZ2 C Y N 472 TRP CZ3 C Y N 473 TRP CH2 C Y N 474 TRP OXT O N N 475 TRP H H N N 476 TRP H2 H N N 477 TRP HA H N N 478 TRP HB2 H N N 479 TRP HB3 H N N 480 TRP HD1 H N N 481 TRP HE1 H N N 482 TRP HE3 H N N 483 TRP HZ2 H N N 484 TRP HZ3 H N N 485 TRP HH2 H N N 486 TRP HXT H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 VAL N N N N 512 VAL CA C N S 513 VAL C C N N 514 VAL O O N N 515 VAL CB C N N 516 VAL CG1 C N N 517 VAL CG2 C N N 518 VAL OXT O N N 519 VAL H H N N 520 VAL H2 H N N 521 VAL HA H N N 522 VAL HB H N N 523 VAL HG11 H N N 524 VAL HG12 H N N 525 VAL HG13 H N N 526 VAL HG21 H N N 527 VAL HG22 H N N 528 VAL HG23 H N N 529 VAL HXT H N N 530 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TRP N CA sing N N 453 TRP N H sing N N 454 TRP N H2 sing N N 455 TRP CA C sing N N 456 TRP CA CB sing N N 457 TRP CA HA sing N N 458 TRP C O doub N N 459 TRP C OXT sing N N 460 TRP CB CG sing N N 461 TRP CB HB2 sing N N 462 TRP CB HB3 sing N N 463 TRP CG CD1 doub Y N 464 TRP CG CD2 sing Y N 465 TRP CD1 NE1 sing Y N 466 TRP CD1 HD1 sing N N 467 TRP CD2 CE2 doub Y N 468 TRP CD2 CE3 sing Y N 469 TRP NE1 CE2 sing Y N 470 TRP NE1 HE1 sing N N 471 TRP CE2 CZ2 sing Y N 472 TRP CE3 CZ3 doub Y N 473 TRP CE3 HE3 sing N N 474 TRP CZ2 CH2 doub Y N 475 TRP CZ2 HZ2 sing N N 476 TRP CZ3 CH2 sing Y N 477 TRP CZ3 HZ3 sing N N 478 TRP CH2 HH2 sing N N 479 TRP OXT HXT sing N N 480 TYR N CA sing N N 481 TYR N H sing N N 482 TYR N H2 sing N N 483 TYR CA C sing N N 484 TYR CA CB sing N N 485 TYR CA HA sing N N 486 TYR C O doub N N 487 TYR C OXT sing N N 488 TYR CB CG sing N N 489 TYR CB HB2 sing N N 490 TYR CB HB3 sing N N 491 TYR CG CD1 doub Y N 492 TYR CG CD2 sing Y N 493 TYR CD1 CE1 sing Y N 494 TYR CD1 HD1 sing N N 495 TYR CD2 CE2 doub Y N 496 TYR CD2 HD2 sing N N 497 TYR CE1 CZ doub Y N 498 TYR CE1 HE1 sing N N 499 TYR CE2 CZ sing Y N 500 TYR CE2 HE2 sing N N 501 TYR CZ OH sing N N 502 TYR OH HH sing N N 503 TYR OXT HXT sing N N 504 VAL N CA sing N N 505 VAL N H sing N N 506 VAL N H2 sing N N 507 VAL CA C sing N N 508 VAL CA CB sing N N 509 VAL CA HA sing N N 510 VAL C O doub N N 511 VAL C OXT sing N N 512 VAL CB CG1 sing N N 513 VAL CB CG2 sing N N 514 VAL CB HB sing N N 515 VAL CG1 HG11 sing N N 516 VAL CG1 HG12 sing N N 517 VAL CG1 HG13 sing N N 518 VAL CG2 HG21 sing N N 519 VAL CG2 HG22 sing N N 520 VAL CG2 HG23 sing N N 521 VAL OXT HXT sing N N 522 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6HT5 'double helix' 6HT5 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 21 1_555 -1.323 0.269 0.226 11.625 -38.957 -32.390 1 A_DC-1:DG20_B A -1 ? B 20 ? ? 1 1 A DC 2 1_555 B DG 20 1_555 0.207 -0.021 0.187 -9.493 -13.145 4.908 2 A_DC0:DG19_B A 0 ? B 19 ? 19 1 1 A DT 3 1_555 B DA 19 1_555 -0.191 -0.084 -0.014 -9.708 -3.447 -5.016 3 A_DT1:DA18_B A 1 ? B 18 ? 20 1 1 A DC 4 1_555 B DG 18 1_555 0.183 -0.169 -0.102 -7.030 7.041 0.095 4 A_DC2:DG17_B A 2 ? B 17 ? 19 1 1 A DA 5 1_555 B DT 17 1_555 0.121 -0.093 -0.014 1.841 12.114 -0.088 5 A_DA3:DT16_B A 3 ? B 16 ? 20 1 1 A DT 6 1_555 B DA 16 1_555 0.001 -0.252 0.670 14.409 15.022 4.886 6 A_DT4:DA15_B A 4 ? B 15 ? 20 1 1 A DT 7 1_555 B DA 15 1_555 -0.155 -0.087 0.252 -7.814 -9.737 -4.438 7 A_DT5:DA14_B A 5 ? B 14 ? 20 1 1 A DG 8 1_555 B DC 14 1_555 -0.210 -0.208 0.706 -1.955 0.586 1.583 8 A_DG6:DC13_B A 6 ? B 13 ? 19 1 1 A DT 9 1_555 B DA 13 1_555 -0.213 -0.111 0.532 0.528 -4.105 -1.833 9 A_DT7:DA12_B A 7 ? B 12 ? 20 1 1 A DT 10 1_555 B DA 12 1_555 -0.096 -0.095 0.624 -0.638 -5.400 -3.641 10 A_DT8:DA11_B A 8 ? B 11 ? 20 1 1 A DA 11 1_555 B DT 11 1_555 -0.065 0.220 0.756 -4.405 1.734 2.075 11 A_DA9:DT10_B A 9 ? B 10 ? 20 1 1 A DT 12 1_555 B DA 10 1_555 0.019 -0.296 0.965 5.068 -2.664 0.970 12 A_DT10:DA9_B A 10 ? B 9 ? 20 1 1 A DG 13 1_555 B DC 9 1_555 -0.103 -0.263 0.675 -0.875 -13.206 -5.203 13 A_DG11:DC8_B A 11 ? B 8 ? 19 1 1 A DC 14 1_555 B DG 8 1_555 0.159 -0.104 -0.149 -4.629 -9.207 -0.876 14 A_DC12:DG7_B A 12 ? B 7 ? 19 1 1 A DT 15 1_555 B DA 7 1_555 -0.178 -0.107 -0.083 -6.230 -11.007 0.793 15 A_DT13:DA6_B A 13 ? B 6 ? 20 1 1 A DA 16 1_555 B DT 6 1_555 0.128 0.505 0.223 -4.304 -10.050 5.597 16 A_DA14:DT5_B A 14 ? B 5 ? 20 1 1 A DG 17 1_555 B DC 5 1_555 0.763 0.918 -0.017 -5.953 -2.641 10.549 17 A_DG15:DC4_B A 15 ? B 4 ? ? 1 1 A DT 18 1_555 B DA 4 1_555 -0.085 -0.078 -0.127 -4.515 4.328 -0.371 18 A_DT16:DA3_B A 16 ? B 3 ? 20 1 1 A DG 19 1_555 B DC 3 1_555 -0.196 -0.148 -0.184 -3.510 2.083 -0.557 19 A_DG17:DC2_B A 17 ? B 2 ? 19 1 1 A DA 20 1_555 B DT 2 1_555 0.223 -0.407 -1.082 -0.583 8.287 -5.245 20 A_DA18:DT1_B A 18 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 21 1_555 A DC 2 1_555 B DG 20 1_555 1.955 -1.287 3.978 1.191 -7.030 45.376 -0.889 -2.378 4.170 -9.047 -1.532 45.903 1 AA_DC-1DC0:DG19DG20_BB A -1 ? B 20 ? A 0 ? B 19 ? 1 A DC 2 1_555 B DG 20 1_555 A DT 3 1_555 B DA 19 1_555 -1.147 -0.277 3.666 -2.160 3.601 30.548 -1.312 1.683 3.680 6.794 4.076 30.829 2 AA_DC0DT1:DA18DG19_BB A 0 ? B 19 ? A 1 ? B 18 ? 1 A DT 3 1_555 B DA 19 1_555 A DC 4 1_555 B DG 18 1_555 1.048 0.162 3.458 0.196 5.031 36.007 -0.485 -1.652 3.455 8.090 -0.316 36.346 3 AA_DT1DC2:DG17DA18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A DC 4 1_555 B DG 18 1_555 A DA 5 1_555 B DT 17 1_555 -0.319 0.908 3.674 -0.923 13.526 18.575 -3.547 0.403 3.522 36.288 2.477 22.961 4 AA_DC2DA3:DT16DG17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DA 5 1_555 B DT 17 1_555 A DT 6 1_555 B DA 16 1_555 0.622 0.014 3.471 -2.665 9.503 18.864 -4.082 -2.840 3.011 26.752 7.501 21.270 5 AA_DA3DT4:DA15DT16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A DT 6 1_555 B DA 16 1_555 A DT 7 1_555 B DA 15 1_555 -0.393 0.340 4.938 6.240 53.973 31.907 -3.817 0.858 2.868 61.418 -7.101 62.388 6 AA_DT4DT5:DA14DA15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A DT 7 1_555 B DA 15 1_555 A DG 8 1_555 B DC 14 1_555 0.485 0.225 3.145 -3.411 -2.841 34.650 0.785 -1.300 3.057 -4.745 5.697 34.924 7 AA_DT5DG6:DC13DA14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A DG 8 1_555 B DC 14 1_555 A DT 9 1_555 B DA 13 1_555 -0.649 -0.407 3.369 1.521 4.984 31.852 -1.632 1.442 3.236 9.007 -2.748 32.264 8 AA_DG6DT7:DA12DC13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A DT 9 1_555 B DA 13 1_555 A DT 10 1_555 B DA 12 1_555 0.345 -0.544 3.200 2.815 2.721 34.542 -1.316 -0.157 3.166 4.565 -4.723 34.757 9 AA_DT7DT8:DA11DA12_BB A 7 ? B 12 ? A 8 ? B 11 ? 1 A DT 10 1_555 B DA 12 1_555 A DA 11 1_555 B DT 11 1_555 0.646 0.314 3.386 2.227 -1.544 41.398 0.614 -0.666 3.401 -2.181 -3.146 41.483 10 AA_DT8DA9:DT10DA11_BB A 8 ? B 11 ? A 9 ? B 10 ? 1 A DA 11 1_555 B DT 11 1_555 A DT 12 1_555 B DA 10 1_555 -0.040 -0.824 3.272 -2.758 3.773 28.147 -2.520 -0.539 3.126 7.692 5.622 28.525 11 AA_DA9DT10:DA9DT10_BB A 9 ? B 10 ? A 10 ? B 9 ? 1 A DT 12 1_555 B DA 10 1_555 A DG 13 1_555 B DC 9 1_555 -1.526 0.294 3.142 -1.763 -0.648 38.032 0.530 2.122 3.202 -0.994 2.703 38.077 12 AA_DT10DG11:DC8DA9_BB A 10 ? B 9 ? A 11 ? B 8 ? 1 A DG 13 1_555 B DC 9 1_555 A DC 14 1_555 B DG 8 1_555 0.252 0.016 3.407 3.263 -2.925 40.882 0.355 0.011 3.407 -4.174 -4.656 41.106 13 AA_DG11DC12:DG7DC8_BB A 11 ? B 8 ? A 12 ? B 7 ? 1 A DC 14 1_555 B DG 8 1_555 A DT 15 1_555 B DA 7 1_555 0.124 -0.007 3.484 -0.725 -0.687 31.057 0.127 -0.379 3.479 -1.283 1.353 31.073 14 AA_DC12DT13:DA6DG7_BB A 12 ? B 7 ? A 13 ? B 6 ? 1 A DT 15 1_555 B DA 7 1_555 A DA 16 1_555 B DT 6 1_555 -0.060 0.876 3.613 -0.634 6.050 35.498 0.448 -0.005 3.708 9.834 1.030 35.999 15 AA_DT13DA14:DT5DA6_BB A 13 ? B 6 ? A 14 ? B 5 ? 1 A DA 16 1_555 B DT 6 1_555 A DG 17 1_555 B DC 5 1_555 0.420 -0.486 3.281 -0.984 5.159 35.649 -1.512 -0.818 3.170 8.371 1.597 36.021 16 AA_DA14DG15:DC4DT5_BB A 14 ? B 5 ? A 15 ? B 4 ? 1 A DG 17 1_555 B DC 5 1_555 A DT 18 1_555 B DA 4 1_555 -0.779 -1.332 3.359 0.895 3.355 25.689 -3.895 1.985 3.134 7.501 -2.001 25.919 17 AA_DG15DT16:DA3DC4_BB A 15 ? B 4 ? A 16 ? B 3 ? 1 A DT 18 1_555 B DA 4 1_555 A DG 19 1_555 B DC 3 1_555 0.466 -0.156 3.153 -1.328 11.067 32.214 -1.953 -0.999 2.921 19.239 2.309 34.040 18 AA_DT16DG17:DC2DA3_BB A 16 ? B 3 ? A 17 ? B 2 ? 1 A DG 19 1_555 B DC 3 1_555 A DA 20 1_555 B DT 2 1_555 -0.583 -0.322 3.623 -0.967 1.706 39.713 -0.693 0.733 3.619 2.510 1.423 39.760 19 AA_DG17DA18:DT1DC2_BB A 17 ? B 2 ? A 18 ? B 1 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1O4X _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6HT5 _atom_sites.fract_transf_matrix[1][1] 0.006054 _atom_sites.fract_transf_matrix[1][2] 0.003495 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006991 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025138 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_