HEADER RNA 05-OCT-18 6HU6 TITLE STRUCTURE OF ARF1 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (19-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (19-MER); COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RNA (5'-R(*GP*AP*GP*UP*GP*CP*CP*AP*GP*A)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: RNA (5'-R(*CP*UP*GP*GP*UP*AP*CP*UP*C)-3'); COMPND 15 CHAIN: F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS DSRBD, RNA LOCALIZATION, SMD, STAUFEN, RNA EXPDTA X-RAY DIFFRACTION AUTHOR C.EMMERICH,D.LAZZARETTI,L.BANDHOLZ-CAJAMARCA,F.BONO REVDAT 3 15-MAY-24 6HU6 1 JRNL REVDAT 2 28-NOV-18 6HU6 1 JRNL REVDAT 1 21-NOV-18 6HU6 0 JRNL AUTH D.LAZZARETTI,L.BANDHOLZ-CAJAMARCA,C.EMMERICH,K.SCHAAF, JRNL AUTH 2 C.BASQUIN,U.IRION,F.BONO JRNL TITL THE CRYSTAL STRUCTURE OF STAUFEN1 IN COMPLEX WITH A JRNL TITL 2 PHYSIOLOGICAL RNA SHEDS LIGHT ON SUBSTRATE SELECTIVITY. JRNL REF LIFE SCI ALLIANCE V. 1 00187 2018 JRNL REFN ESSN 2575-1077 JRNL PMID 30456389 JRNL DOI 10.26508/LSA.201800187 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8091 - 3.2558 0.99 2804 148 0.1773 0.1844 REMARK 3 2 3.2558 - 2.5844 0.99 2602 137 0.2696 0.2853 REMARK 3 3 2.5844 - 2.2577 1.00 2609 138 0.2995 0.3703 REMARK 3 4 2.2577 - 2.0513 1.00 2578 136 0.2750 0.3641 REMARK 3 5 2.0513 - 1.9043 1.00 2540 134 0.3026 0.3203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1346 REMARK 3 ANGLE : 2.407 2091 REMARK 3 CHIRALITY : 0.099 282 REMARK 3 PLANARITY : 0.014 57 REMARK 3 DIHEDRAL : 6.348 669 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -9.0468 12.2677 -37.7518 REMARK 3 T TENSOR REMARK 3 T11: 0.3467 T22: 0.4168 REMARK 3 T33: 0.3413 T12: 0.0136 REMARK 3 T13: -0.0106 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: -0.3563 L22: 0.0697 REMARK 3 L33: -0.0709 L12: -0.1005 REMARK 3 L13: 0.0180 L23: 0.0288 REMARK 3 S TENSOR REMARK 3 S11: 0.1675 S12: 0.0559 S13: 0.1267 REMARK 3 S21: -0.0845 S22: 0.1277 S23: -0.0770 REMARK 3 S31: 0.0195 S32: 0.0049 S33: 0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25323 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M (NH4)2SO4, 100 MM TRI-SODIUM REMARK 280 CITRATE PH 6.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 21.90150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 12.64484 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 150.69567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 21.90150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 12.64484 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 150.69567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 21.90150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 12.64484 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 150.69567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 21.90150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 12.64484 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 150.69567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 21.90150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 12.64484 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 150.69567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 21.90150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 12.64484 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 150.69567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 25.28967 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 301.39133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 25.28967 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 301.39133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 25.28967 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 301.39133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 25.28967 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 301.39133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 25.28967 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 301.39133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 25.28967 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 301.39133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 N NH4 A 101 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 A 102 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 210 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 211 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 216 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 222 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 304 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 G B 79 H3 U F 208 1.39 REMARK 500 H42 C B 80 O6 G F 207 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HN1 NH4 B 101 HN4 NH4 B 101 3565 0.33 REMARK 500 N NH4 B 101 HN4 NH4 B 101 2665 0.40 REMARK 500 N NH4 B 101 HN1 NH4 B 101 3565 0.54 REMARK 500 HN1 NH4 B 101 HN2 NH4 B 101 2665 0.62 REMARK 500 N NH4 B 101 N NH4 B 101 2665 0.65 REMARK 500 HN2 NH4 B 101 HN4 NH4 B 101 2665 0.83 REMARK 500 HN3 NH4 B 101 HN4 NH4 B 101 2665 0.89 REMARK 500 HN1 NH4 B 101 HN3 NH4 B 101 2665 1.12 REMARK 500 H61 A B 84 H61 A B 84 6555 1.32 REMARK 500 N NH4 B 101 HN3 NH4 B 101 3565 1.41 REMARK 500 N NH4 B 101 HN2 NH4 B 101 2665 1.45 REMARK 500 O3' A B 84 P C F 204 6555 1.92 REMARK 500 N1 A B 84 N1 A B 84 6555 2.02 REMARK 500 O3' A B 84 OP1 C F 204 6555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 79 N7 G A 79 C8 0.041 REMARK 500 G B 79 C2 G B 79 N3 0.092 REMARK 500 G B 79 N3 G B 79 C4 -0.061 REMARK 500 G B 79 C5 G B 79 C6 0.076 REMARK 500 G B 79 C5 G B 79 N7 0.053 REMARK 500 G B 79 N7 G B 79 C8 0.060 REMARK 500 G B 79 N9 G B 79 C4 0.078 REMARK 500 C B 80 N1 C B 80 C6 -0.048 REMARK 500 C B 80 C2 C B 80 N3 -0.061 REMARK 500 C B 81 N3 C B 81 C4 -0.062 REMARK 500 A B 82 N1 A B 82 C2 0.071 REMARK 500 A B 82 C2 A B 82 N3 0.136 REMARK 500 A B 82 C5 A B 82 N7 0.056 REMARK 500 A B 82 N7 A B 82 C8 0.089 REMARK 500 A B 82 N9 A B 82 C4 0.097 REMARK 500 G B 83 N1 G B 83 C2 0.057 REMARK 500 G B 83 C2 G B 83 N3 0.069 REMARK 500 G B 83 C5 G B 83 N7 0.063 REMARK 500 G B 83 N7 G B 83 C8 0.069 REMARK 500 A B 84 C2 A B 84 N3 -0.062 REMARK 500 A B 84 C5 A B 84 C6 -0.119 REMARK 500 A B 84 C6 A B 84 N1 -0.070 REMARK 500 C F 204 N3 C F 204 C4 -0.055 REMARK 500 U F 205 C2 U F 205 O2 0.057 REMARK 500 U F 205 C4 U F 205 O4 0.084 REMARK 500 U F 205 C2 U F 205 N3 0.052 REMARK 500 G F 206 C2 G F 206 N3 0.118 REMARK 500 G F 206 C5 G F 206 C6 -0.062 REMARK 500 G F 206 C6 G F 206 N1 0.082 REMARK 500 G F 206 N7 G F 206 C8 0.064 REMARK 500 G F 207 N1 G F 207 C2 0.054 REMARK 500 G F 207 C2 G F 207 N3 0.099 REMARK 500 G F 207 C5 G F 207 C6 0.076 REMARK 500 G F 207 C6 G F 207 N1 0.049 REMARK 500 G F 207 N7 G F 207 C8 0.141 REMARK 500 G F 207 N9 G F 207 C4 0.049 REMARK 500 G F 207 C2 G F 207 N2 0.070 REMARK 500 U F 208 C4 U F 208 O4 0.064 REMARK 500 A F 209 N3 A F 209 C4 -0.038 REMARK 500 A F 209 C5 A F 209 C6 -0.087 REMARK 500 A F 209 C6 A F 209 N1 0.047 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 79 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 G A 79 N9 - C4 - C5 ANGL. DEV. = 3.3 DEGREES REMARK 500 G A 79 N1 - C6 - O6 ANGL. DEV. = -5.2 DEGREES REMARK 500 G A 79 C5 - C6 - O6 ANGL. DEV. = 4.7 DEGREES REMARK 500 C A 80 C2 - N3 - C4 ANGL. DEV. = -3.4 DEGREES REMARK 500 C A 81 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 C A 81 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 A A 82 C8 - N9 - C4 ANGL. DEV. = 2.5 DEGREES REMARK 500 A A 82 C5 - C6 - N6 ANGL. DEV. = -5.0 DEGREES REMARK 500 A A 85 C8 - N9 - C4 ANGL. DEV. = 2.5 DEGREES REMARK 500 A A 85 C5 - C6 - N6 ANGL. DEV. = -5.8 DEGREES REMARK 500 G A 86 N9 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 G A 86 N1 - C6 - O6 ANGL. DEV. = -4.5 DEGREES REMARK 500 U A 88 N3 - C4 - O4 ANGL. DEV. = -4.6 DEGREES REMARK 500 C E 204 C2 - N3 - C4 ANGL. DEV. = -3.7 DEGREES REMARK 500 C E 204 N3 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 A E 209 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 A E 209 C5 - C6 - N6 ANGL. DEV. = -5.9 DEGREES REMARK 500 C E 210 OP1 - P - OP2 ANGL. DEV. = 9.1 DEGREES REMARK 500 G B 75 C4 - C5 - N7 ANGL. DEV. = -2.5 DEGREES REMARK 500 G B 75 N9 - C4 - C5 ANGL. DEV. = 2.9 DEGREES REMARK 500 A B 76 O3' - P - OP2 ANGL. DEV. = 7.5 DEGREES REMARK 500 G B 77 O5' - P - OP2 ANGL. DEV. = -10.4 DEGREES REMARK 500 G B 77 C4 - C5 - N7 ANGL. DEV. = -4.3 DEGREES REMARK 500 G B 77 C5 - N7 - C8 ANGL. DEV. = 3.9 DEGREES REMARK 500 G B 79 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G B 79 C6 - N1 - C2 ANGL. DEV. = -6.5 DEGREES REMARK 500 G B 79 N1 - C2 - N3 ANGL. DEV. = 4.7 DEGREES REMARK 500 G B 79 C4 - C5 - N7 ANGL. DEV. = -6.2 DEGREES REMARK 500 G B 79 C5 - N7 - C8 ANGL. DEV. = 4.8 DEGREES REMARK 500 G B 79 N9 - C4 - C5 ANGL. DEV. = 5.0 DEGREES REMARK 500 G B 79 N3 - C4 - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 G B 79 C6 - C5 - N7 ANGL. DEV. = 5.2 DEGREES REMARK 500 G B 79 N1 - C2 - N2 ANGL. DEV. = -7.9 DEGREES REMARK 500 G B 79 N1 - C6 - O6 ANGL. DEV. = -10.3 DEGREES REMARK 500 G B 79 C5 - C6 - O6 ANGL. DEV. = 8.6 DEGREES REMARK 500 C B 81 O3' - P - OP2 ANGL. DEV. = 7.8 DEGREES REMARK 500 C B 81 O5' - P - OP2 ANGL. DEV. = -9.5 DEGREES REMARK 500 C B 81 N3 - C2 - O2 ANGL. DEV. = -5.5 DEGREES REMARK 500 C B 81 N3 - C4 - N4 ANGL. DEV. = -5.8 DEGREES REMARK 500 C B 81 C5 - C4 - N4 ANGL. DEV. = 6.2 DEGREES REMARK 500 A B 82 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 A B 82 C6 - N1 - C2 ANGL. DEV. = -5.9 DEGREES REMARK 500 A B 82 C5 - C6 - N1 ANGL. DEV. = 7.7 DEGREES REMARK 500 A B 82 C5 - C6 - N6 ANGL. DEV. = -5.7 DEGREES REMARK 500 G B 83 C6 - N1 - C2 ANGL. DEV. = -6.3 DEGREES REMARK 500 G B 83 N1 - C2 - N3 ANGL. DEV. = 3.6 DEGREES REMARK 500 G B 83 C2 - N3 - C4 ANGL. DEV. = -4.2 DEGREES REMARK 500 G B 83 N1 - C6 - O6 ANGL. DEV. = 4.3 DEGREES REMARK 500 G B 83 C5 - C6 - O6 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 95 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 6HU6 A 75 93 PDB 6HU6 6HU6 75 93 DBREF 6HU6 E 194 212 PDB 6HU6 6HU6 194 212 DBREF 6HU6 B 75 84 PDB 6HU6 6HU6 75 84 DBREF 6HU6 F 204 212 PDB 6HU6 6HU6 204 212 SEQRES 1 A 19 G A G U G C C A G A A G C SEQRES 2 A 19 U G C C U C SEQRES 1 E 19 G A G G C A G U U U C U G SEQRES 2 E 19 G U A C U C SEQRES 1 B 10 G A G U G C C A G A SEQRES 1 F 9 C U G G U A C U C HET NH4 A 101 5 HET NH4 A 102 5 HET NH4 B 101 5 HETNAM NH4 AMMONIUM ION FORMUL 5 NH4 3(H4 N 1+) FORMUL 8 HOH *40(H2 O) CRYST1 43.803 43.803 452.087 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022829 0.013181 0.000000 0.00000 SCALE2 0.000000 0.026361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002212 0.00000