HEADER LYASE 16-OCT-18 6HXA TITLE ANTI FROM P. LUMINESCENS CATALYSES TERMINAL POLYKETIDE SHORTENING IN TITLE 2 THE BIOSYNTHESIS OF ANTHRAQUINONES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS LUMINESCENS; SOURCE 3 ORGANISM_TAXID: 29488; SOURCE 4 GENE: PLU4186; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLA KEYWDS NATURAL PRODUCT BIOSYNTHESIS, TYPE II POLYKETIDE SYNTHASE SYSTEM, KEYWDS 2 LYASE, ALPHA, BETA-HYDROLASE FOLD, CASCADE REACTION, RETRO CLAISEN KEYWDS 3 REACTION, DIECKMANN CONDENSATION EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZHOU,A.BRAEUER,G.GRAMMBITTER,M.SCHMALHOFER,P.SAURA,H.ADIHOU, AUTHOR 2 V.R.I.KAILA,M.GROLL,H.BODE REVDAT 2 01-MAY-24 6HXA 1 REMARK REVDAT 1 07-AUG-19 6HXA 0 JRNL AUTH Q.ZHOU,A.BRAUER,H.ADIHOU,M.SCHMALHOFER,P.SAURA, JRNL AUTH 2 G.L.C.GRAMMBITTER,V.R.I.KAILA,M.GROLL,H.B.BODE JRNL TITL MOLECULAR MECHANISM OF POLYKETIDE SHORTENING IN JRNL TITL 2 ANTHRAQUINONE BIOSYNTHESIS OFPHOTORHABDUS LUMINESCENS. JRNL REF CHEM SCI V. 10 6341 2019 JRNL REFN ISSN 2041-6520 JRNL PMID 31341589 JRNL DOI 10.1039/C9SC00749K REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1649 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2295 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3039 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : -4.11000 REMARK 3 B33 (A**2) : 3.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.390 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.206 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3153 ; 0.003 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2808 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4259 ; 0.789 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6568 ; 0.740 ; 1.647 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 6.310 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;31.921 ;23.214 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;12.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.324 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.039 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3512 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 644 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1501 ; 1.039 ; 3.425 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1500 ; 1.037 ; 3.424 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1875 ; 1.495 ; 5.134 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1876 ; 1.494 ; 5.136 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1652 ; 1.043 ; 3.708 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1652 ; 1.043 ; 3.708 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2384 ; 1.384 ; 5.455 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3655 ; 2.325 ;39.954 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3623 ; 2.246 ;39.701 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5956 ; 0.352 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 85 ;31.382 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5976 ;18.333 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 381 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0990 17.1772 94.0862 REMARK 3 T TENSOR REMARK 3 T11: 0.0005 T22: 0.0400 REMARK 3 T33: 0.0195 T12: 0.0004 REMARK 3 T13: 0.0016 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1063 L22: 0.0949 REMARK 3 L33: 0.0125 L12: 0.0423 REMARK 3 L13: 0.0011 L23: -0.0118 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0016 S13: 0.0199 REMARK 3 S21: 0.0003 S22: 0.0017 S23: 0.0085 REMARK 3 S31: 0.0015 S32: 0.0058 S33: -0.0004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: SEMET DERIVATIVE; COORDINATES NOT DEPOSITED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 0.1 M NAAC, 22% PEG REMARK 280 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.62000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.62000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.05500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.17000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.05500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.17000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.62000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.05500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.17000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.62000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.05500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.17000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 182.48000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 676 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 382 REMARK 465 LYS A 383 REMARK 465 GLY A 384 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 682 O HOH A 682 3656 1.82 REMARK 500 OH TYR A 20 CD GLU A 160 1455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 27 -128.51 48.48 REMARK 500 ASP A 143 -106.36 65.31 REMARK 500 ILE A 180 -87.92 -100.87 REMARK 500 SER A 245 -122.86 56.84 REMARK 500 VAL A 356 -0.10 81.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 117 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 402 DBREF 6HXA A 1 384 UNP Q7MZT8 Q7MZT8_PHOLL 1 384 SEQADV 6HXA GLY A -14 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA SER A -13 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA SER A -12 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA HIS A -11 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA HIS A -10 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA HIS A -9 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA HIS A -8 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA HIS A -7 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA HIS A -6 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA SER A -5 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA GLY A -4 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA ASP A -3 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA PRO A -2 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA ALA A -1 UNP Q7MZT8 EXPRESSION TAG SEQADV 6HXA SER A 0 UNP Q7MZT8 EXPRESSION TAG SEQRES 1 A 399 GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY ASP PRO SEQRES 2 A 399 ALA SER MET ASN ASN LYS ASN LYS PRO ASN ARG ILE SER SEQRES 3 A 399 PRO GLU LEU LEU ALA THR CYS GLY TYR PHE MET PRO ARG SEQRES 4 A 399 ILE PHE PHE LEU ASN SER GLN TYR ALA PRO GLN VAL HIS SEQRES 5 A 399 TRP GLY ASP VAL VAL ALA ALA LEU SER HIS PHE PRO ALA SEQRES 6 A 399 GLY ASN LEU ASP LEU SER SER GLU GLU PHE TRP TYR GLU SEQRES 7 A 399 TRP MET ILE ASN TRP SER LYS VAL GLY ASP SER TYR ILE SEQRES 8 A 399 ASN ILE ALA ASN SER ALA LYS SER GLU VAL SER HIS VAL SEQRES 9 A 399 ARG ALA LEU ARG SER ALA ALA ALA CYS TYR HIS TRP ALA SEQRES 10 A 399 GLU PHE MET TYR PHE SER ASP ARG SER ARG LYS ILE GLN SEQRES 11 A 399 LEU ARG GLU TYR ILE ARG SER CYS PHE LEU SER SER ILE SEQRES 12 A 399 LYS TYR SER ASP LEU LEU VAL ASP HIS GLN TYR ILE VAL SEQRES 13 A 399 VAL ASP LYS PHE HIS MET PRO PHE PHE LEU ILE PHE PRO SEQRES 14 A 399 LYS GLY TYR LYS GLU GLU GLU ASN HIS PRO LEU PRO CYS SEQRES 15 A 399 VAL ILE LEU SER ASN GLY LEU ASP SER MET THR GLU ILE SEQRES 16 A 399 GLU ILE LEU SER LEU ALA GLU PHE PHE LEU GLY LYS ASN SEQRES 17 A 399 MET ALA VAL ALA ILE PHE ASP GLY PRO GLY GLN GLY ILE SEQRES 18 A 399 ASN LEU GLY LYS SER PRO ILE ALA ILE ASP MET GLU LEU SEQRES 19 A 399 TYR VAL SER SER ILE VAL LYS LEU LEU GLU ASP ASP ALA SEQRES 20 A 399 ARG ILE ASN SER ASN LEU LEU CYS PHE LEU GLY ILE SER SEQRES 21 A 399 PHE GLY GLY TYR PHE ALA LEU ARG VAL ALA GLN ARG ILE SEQRES 22 A 399 GLY ASP LYS PHE CYS CYS ILE VAL ASN LEU SER GLY GLY SEQRES 23 A 399 PRO GLU ILE ALA GLU PHE ASP LYS LEU PRO ARG ARG LEU SEQRES 24 A 399 LYS GLU ASP PHE GLN PHE ALA PHE MET GLN ASP ASN SER SEQRES 25 A 399 HIS MET GLN SER ILE PHE ASP GLU ILE LYS LEU ASP ILE SEQRES 26 A 399 SER LEU PRO CYS LYS THR LYS VAL PHE THR VAL HIS GLY SEQRES 27 A 399 GLU LEU ASP ASP ILE PHE GLN ILE ASP LYS VAL LYS LYS SEQRES 28 A 399 LEU ASP GLN LEU TRP GLY ASP ASN HIS GLN LEU LEU CYS SEQRES 29 A 399 TYR GLU SER GLU ALA HIS VAL CYS LEU ASN LYS ILE ASN SEQRES 30 A 399 GLU TYR MET ILE GLN VAL SER ASP TRP VAL SER GLU GLN SEQRES 31 A 399 PHE TRP LEU ASN GLY TYR LYS LYS GLY HET PGE A 401 10 HET PG4 A 402 13 HETNAM PGE TRIETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 PGE C6 H14 O4 FORMUL 3 PG4 C8 H18 O5 FORMUL 4 HOH *182(H2 O) HELIX 1 AA1 SER A 11 CYS A 18 1 8 HELIX 2 AA2 PHE A 21 PHE A 27 1 7 HELIX 3 AA3 HIS A 37 SER A 46 1 10 HELIX 4 AA4 SER A 57 ALA A 82 1 26 HELIX 5 AA5 SER A 84 PHE A 104 1 21 HELIX 6 AA6 ASP A 109 TYR A 130 1 22 HELIX 7 AA7 ILE A 180 GLY A 191 1 12 HELIX 8 AA8 GLN A 204 LEU A 208 5 5 HELIX 9 AA9 MET A 217 ASP A 231 1 15 HELIX 10 AB1 SER A 245 GLY A 259 1 15 HELIX 11 AB2 ASP A 260 PHE A 262 5 3 HELIX 12 AB3 GLU A 276 LEU A 280 5 5 HELIX 13 AB4 PRO A 281 MET A 293 1 13 HELIX 14 AB5 ASP A 295 SER A 297 5 3 HELIX 15 AB6 HIS A 298 LYS A 307 1 10 HELIX 16 AB7 GLN A 330 GLY A 342 1 13 HELIX 17 AB8 ALA A 354 ASN A 359 5 6 HELIX 18 AB9 LYS A 360 ASN A 379 1 20 SHEET 1 AA1 8 VAL A 135 VAL A 142 0 SHEET 2 AA1 8 PHE A 145 ILE A 152 -1 O LEU A 151 N ASP A 136 SHEET 3 AA1 8 ALA A 195 PHE A 199 -1 O ILE A 198 N PHE A 150 SHEET 4 AA1 8 LEU A 165 SER A 171 1 N VAL A 168 O ALA A 197 SHEET 5 AA1 8 ILE A 234 ILE A 244 1 O ASN A 235 N LEU A 165 SHEET 6 AA1 8 CYS A 264 LEU A 268 1 O LEU A 268 N GLY A 243 SHEET 7 AA1 8 LYS A 317 GLY A 323 1 O PHE A 319 N ASN A 267 SHEET 8 AA1 8 HIS A 345 TYR A 350 1 O LEU A 348 N THR A 320 SITE 1 AC1 3 TYR A 99 TYR A 119 HOH A 584 SITE 1 AC2 4 ALA A 82 SER A 84 TYR A 130 HOH A 614 CRYST1 54.110 154.340 91.240 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010960 0.00000