HEADER HYDROLASE 19-OCT-18 6HY3 TITLE THREE-DIMENSIONAL STRUCTURE OF AGAC FROM ZOBELLIA GALACTANIVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-AGARASE C; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.81; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOBELLIA GALACTANIVORANS; SOURCE 3 ORGANISM_TAXID: 63186; SOURCE 4 GENE: AGAC, ZOBELLIA_4267; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, ZOBELLIA GALACTANIVORANS, AGAR, MARINE BACTERIA, KEYWDS 2 RED ALGAE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.NARETTO,M.FANUEL,D.ROPARTZ,H.ROGNIAUX,R.LAROCQUE,M.CZJZEK, AUTHOR 2 C.TELLIER,G.MICHEL REVDAT 3 08-MAY-19 6HY3 1 JRNL REVDAT 2 20-MAR-19 6HY3 1 JRNL REVDAT 1 13-MAR-19 6HY3 0 JRNL AUTH A.NARETTO,M.FANUEL,D.ROPARTZ,H.ROGNIAUX,R.LAROCQUE,M.CZJZEK, JRNL AUTH 2 C.TELLIER,G.MICHEL JRNL TITL THE AGAR-SPECIFIC HYDROLASEZGAGAC FROM THE MARINE JRNL TITL 2 BACTERIUMZOBELLIA GALACTANIVORANSDEFINES A NEW GH16 PROTEIN JRNL TITL 3 SUBFAMILY. JRNL REF J.BIOL.CHEM. V. 294 6923 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30846563 JRNL DOI 10.1074/JBC.RA118.006609 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 67137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4303 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.044 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.742 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2323 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1963 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3165 ; 1.944 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4588 ; 1.551 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 7.950 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;38.021 ;24.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;11.076 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.076 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2637 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 503 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1094 ; 1.052 ; 1.096 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1093 ; 1.049 ; 1.094 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1372 ; 1.481 ; 1.645 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1373 ; 1.482 ; 1.647 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1229 ; 2.533 ; 1.329 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1230 ; 2.532 ; 1.330 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1792 ; 3.602 ; 1.905 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2658 ; 4.521 ;13.927 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2659 ; 4.520 ;13.939 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70662 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M SODIUM MALONATE AND 1% GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.30200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.74900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.30200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.74900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 57 REMARK 465 GLY A 58 REMARK 465 SER A 59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 141 CD GLU A 141 OE2 -0.067 REMARK 500 GLU A 188 CD GLU A 188 OE2 -0.066 REMARK 500 GLU A 248 CD GLU A 248 OE1 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 278 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 279 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 112 -169.21 -79.19 REMARK 500 HIS A 169 59.05 -93.27 REMARK 500 ASP A 258 -160.34 -162.42 REMARK 500 ALA A 271 -128.18 -105.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 126 10.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 785 DISTANCE = 6.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 O REMARK 620 2 GLY A 128 O 100.4 REMARK 620 3 ASP A 318 O 84.5 102.5 REMARK 620 4 ASP A 318 OD1 165.2 89.0 82.3 REMARK 620 5 HOH A 520 O 92.1 98.0 159.5 97.9 REMARK 620 6 HOH A 630 O 90.0 160.3 95.1 84.5 64.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 DBREF 6HY3 A 69 328 UNP D7GXG5 AGAC_ZOBGA 69 328 SEQADV 6HY3 MET A 57 UNP D7GXG5 INITIATING METHIONINE SEQADV 6HY3 GLY A 58 UNP D7GXG5 EXPRESSION TAG SEQADV 6HY3 SER A 59 UNP D7GXG5 EXPRESSION TAG SEQADV 6HY3 SER A 60 UNP D7GXG5 EXPRESSION TAG SEQADV 6HY3 HIS A 61 UNP D7GXG5 EXPRESSION TAG SEQADV 6HY3 HIS A 62 UNP D7GXG5 EXPRESSION TAG SEQADV 6HY3 HIS A 63 UNP D7GXG5 EXPRESSION TAG SEQADV 6HY3 HIS A 64 UNP D7GXG5 EXPRESSION TAG SEQADV 6HY3 HIS A 65 UNP D7GXG5 EXPRESSION TAG SEQADV 6HY3 HIS A 66 UNP D7GXG5 EXPRESSION TAG SEQADV 6HY3 GLY A 67 UNP D7GXG5 EXPRESSION TAG SEQADV 6HY3 SER A 68 UNP D7GXG5 EXPRESSION TAG SEQRES 1 A 272 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 A 272 TYR ASP PHE THR GLY ASN THR PRO PRO PRO ALA PRO GLN SEQRES 3 A 272 GLY MET LYS TRP VAL LYS ILE SER GLN LEU SER ASP GLU SEQRES 4 A 272 PHE ASN ASN GLY PHE ASN THR ASP LYS TRP THR LYS SER SEQRES 5 A 272 LEU TRP ASN TYR GLY VAL PRO VAL GLN MET LYS ALA GLU SEQRES 6 A 272 ASN SER GLY VAL SER ASP GLY LYS LEU TRP ILE LYS ALA SEQRES 7 A 272 THR LEU GLY ASN ASP PRO GLU ARG TRP PHE GLU THR SER SEQRES 8 A 272 ARG VAL MET SER LYS ALA GLN VAL ASN TYR PRO MET TYR SEQRES 9 A 272 THR VAL SER ARG ILE LYS GLY ALA HIS ILE SER ALA TYR SEQRES 10 A 272 ASN THR PHE TRP LEU ASN ASN GLY ASN ILE SER ASN ARG SEQRES 11 A 272 ASN GLU ILE ASP VAL ILE GLU ASN ASN SER ASN PRO SER SEQRES 12 A 272 CYS ASN CYS GLN PRO ASP PHE PRO TRP GLN MET ASN SER SEQRES 13 A 272 GLN TYR PHE HIS VAL VAL ASN ASP ASP THR LYS ARG ASN SEQRES 14 A 272 LYS GLY ASN PHE ASP ASN ARG GLU LEU SER ASP ALA ASN SEQRES 15 A 272 PRO LEU LYS GLY VAL ALA TRP ASN GLU GLU TYR HIS THR SEQRES 16 A 272 PHE GLY VAL TRP TRP LYS ASP ALA THR HIS ILE GLN PHE SEQRES 17 A 272 TYR LEU ASP GLY GLU PRO ALA GLY SER VAL VAL SER ALA SEQRES 18 A 272 ARG ASP PHE THR ARG GLU LEU ASN ILE ILE TRP ASP LEU SEQRES 19 A 272 TRP THR VAL ASP ALA ASP TRP LEU GLY GLY LEU ALA LYS SEQRES 20 A 272 LYS GLU HIS LEU SER ASN ASN ASN ILE ASN THR MET LYS SEQRES 21 A 272 ILE ASP TRP ILE HIS THR TYR GLN LEU VAL GLU GLU HET MG A 401 1 HET GOL A 402 6 HET GOL A 403 6 HET EDO A 404 4 HET EDO A 405 4 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG MG 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *285(H2 O) HELIX 1 AA1 HIS A 63 SER A 68 5 6 HELIX 2 AA2 SER A 90 SER A 93 5 4 HELIX 3 AA3 ARG A 232 LEU A 234 5 3 HELIX 4 AA4 LYS A 303 ASN A 309 5 7 SHEET 1 AA1 4 MET A 84 LYS A 88 0 SHEET 2 AA1 4 THR A 314 GLU A 327 -1 O VAL A 326 N LYS A 85 SHEET 3 AA1 4 LYS A 129 LYS A 133 -1 N LEU A 130 O ILE A 317 SHEET 4 AA1 4 SER A 123 SER A 126 -1 N GLY A 124 O TRP A 131 SHEET 1 AA2 6 MET A 84 LYS A 88 0 SHEET 2 AA2 6 THR A 314 GLU A 327 -1 O VAL A 326 N LYS A 85 SHEET 3 AA2 6 MET A 159 LYS A 166 -1 N TYR A 160 O TYR A 323 SHEET 4 AA2 6 HIS A 250 TRP A 256 -1 O HIS A 250 N ILE A 165 SHEET 5 AA2 6 HIS A 261 LEU A 266 -1 O GLN A 263 N TRP A 255 SHEET 6 AA2 6 GLU A 269 VAL A 275 -1 O ALA A 271 N PHE A 264 SHEET 1 AA3 7 TRP A 105 LYS A 107 0 SHEET 2 AA3 7 ARG A 148 SER A 151 -1 O MET A 150 N THR A 106 SHEET 3 AA3 7 ASN A 285 TRP A 291 -1 O ILE A 286 N SER A 151 SHEET 4 AA3 7 TYR A 173 GLY A 181 -1 N TRP A 177 O ILE A 287 SHEET 5 AA3 7 ARG A 186 ASN A 194 -1 O ILE A 189 N LEU A 178 SHEET 6 AA3 7 GLN A 213 VAL A 218 -1 O GLN A 213 N ASP A 190 SHEET 7 AA3 7 ASP A 221 LYS A 226 -1 O LYS A 223 N HIS A 216 SHEET 1 AA4 3 VAL A 116 MET A 118 0 SHEET 2 AA4 3 PHE A 144 THR A 146 1 O PHE A 144 N GLN A 117 SHEET 3 AA4 3 THR A 135 LEU A 136 -1 N THR A 135 O GLU A 145 SHEET 1 AA5 2 GLN A 209 MET A 210 0 SHEET 2 AA5 2 PHE A 229 ASP A 230 -1 O PHE A 229 N MET A 210 SSBOND 1 CYS A 200 CYS A 202 1555 1555 2.17 LINK O GLU A 95 MG MG A 401 1555 1555 2.32 LINK O GLY A 128 MG MG A 401 1555 1555 2.24 LINK O ASP A 318 MG MG A 401 1555 1555 2.26 LINK OD1 ASP A 318 MG MG A 401 1555 1555 2.40 LINK MG MG A 401 O HOH A 520 1555 1555 2.38 LINK MG MG A 401 O HOH A 630 1555 1555 2.61 CISPEP 1 VAL A 114 PRO A 115 0 11.44 CISPEP 2 TYR A 157 PRO A 158 0 -7.90 SITE 1 AC1 5 GLU A 95 GLY A 128 ASP A 318 HOH A 520 SITE 2 AC1 5 HOH A 630 SITE 1 AC2 10 HIS A 63 TYR A 112 THR A 175 TRP A 177 SITE 2 AC2 10 GLU A 188 ASP A 190 GLU A 193 TRP A 291 SITE 3 AC2 10 HOH A 563 HOH A 609 SITE 1 AC3 9 GLU A 95 GLN A 209 ASN A 228 PHE A 229 SITE 2 AC3 9 ASP A 230 GLU A 233 HOH A 509 HOH A 577 SITE 3 AC3 9 HOH A 580 SITE 1 AC4 7 HIS A 65 PHE A 72 ARG A 224 ALA A 237 SITE 2 AC4 7 PRO A 239 HOH A 562 HOH A 625 SITE 1 AC5 5 MET A 150 ASN A 179 ASN A 285 HOH A 501 SITE 2 AC5 5 HOH A 541 CRYST1 60.604 101.498 46.693 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016501 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021416 0.00000