HEADER IMMUNE SYSTEM 21-OCT-18 6HYG TITLE HETEROMERIC TANDEM IGG4/IGG1 FC COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGHG1 AND IGHG4 HYBRID; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: CHO-K1-GS KEYWDS IMMUNOGLOBULIN, FC, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.B.CASALETTO,M.L.GEDDIE,A.O.ABU-YOUSIF,K.MASSON,A.FULGHAM,A.BOUDOT, AUTHOR 2 T.MAIWALD,J.D.KEARNS,N.KOHLI,S.SU,M.RAZLOG,A.RAUE,A.KALRA, AUTHOR 3 M.HAKANSSON,D.T.LOGAN,M.WELIN,S.CHATTOPADHYAY,B.D.HARMS,U.B.NIELSEN, AUTHOR 4 B.SCHOEBERL,A.A.LUGOVSKOY,G.MACBEATH REVDAT 5 24-JAN-24 6HYG 1 LINK REVDAT 4 16-OCT-19 6HYG 1 COMPND SOURCE REVDAT 3 24-APR-19 6HYG 1 JRNL REVDAT 2 03-APR-19 6HYG 1 JRNL REVDAT 1 13-MAR-19 6HYG 0 JRNL AUTH J.B.CASALETTO,M.L.GEDDIE,A.O.ABU-YOUSIF,K.MASSON,A.FULGHAM, JRNL AUTH 2 A.BOUDOT,T.MAIWALD,J.D.KEARNS,N.KOHLI,S.SU,M.RAZLOG,A.RAUE, JRNL AUTH 3 A.KALRA,M.HAKANSSON,D.T.LOGAN,M.WELIN,S.CHATTOPADHYAY, JRNL AUTH 4 B.D.HARMS,U.B.NIELSEN,B.SCHOEBERL,A.A.LUGOVSKOY,G.MACBEATH JRNL TITL MM-131, A BISPECIFIC ANTI-MET/EPCAM MAB, INHIBITS JRNL TITL 2 HGF-DEPENDENT AND HGF-INDEPENDENT MET SIGNALING THROUGH JRNL TITL 3 CONCURRENT BINDING TO EPCAM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 7533 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 30898885 JRNL DOI 10.1073/PNAS.1819085116 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 26607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1353 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.8960 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.9230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : 5.78000 REMARK 3 B33 (A**2) : -5.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.89000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.671 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3418 ; 0.019 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3070 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4651 ; 2.398 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7209 ; 1.524 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 9.690 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;32.677 ;24.132 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 587 ;19.332 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;26.952 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3756 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 658 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1662 ; 2.262 ; 2.637 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1661 ; 2.261 ; 2.636 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2074 ; 3.507 ; 3.945 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2075 ; 3.506 ; 3.946 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1756 ; 2.521 ; 2.857 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1756 ; 2.521 ; 2.857 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2578 ; 3.822 ; 4.174 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3604 ; 5.946 ;29.782 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3583 ; 5.930 ;29.645 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.507 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H,-K,-L REMARK 3 TWIN FRACTION : 0.493 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3660 -30.9710 32.7500 REMARK 3 T TENSOR REMARK 3 T11: 0.1797 T22: 0.1217 REMARK 3 T33: 0.0811 T12: 0.0070 REMARK 3 T13: -0.0568 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 2.5900 L22: 1.8358 REMARK 3 L33: 1.4463 L12: 0.0346 REMARK 3 L13: 0.3501 L23: -0.0821 REMARK 3 S TENSOR REMARK 3 S11: -0.1551 S12: -0.0940 S13: 0.0559 REMARK 3 S21: 0.2859 S22: -0.0333 S23: -0.3190 REMARK 3 S31: -0.0491 S32: 0.1193 S33: 0.1883 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 282 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2750 -33.7430 6.0810 REMARK 3 T TENSOR REMARK 3 T11: 0.1875 T22: 0.1064 REMARK 3 T33: 0.0805 T12: -0.0097 REMARK 3 T13: 0.0444 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 2.6567 L22: 1.7812 REMARK 3 L33: 1.5006 L12: -0.0719 REMARK 3 L13: -0.3092 L23: -0.0372 REMARK 3 S TENSOR REMARK 3 S11: -0.1270 S12: 0.1168 S13: -0.0550 REMARK 3 S21: -0.2626 S22: -0.0451 S23: -0.3171 REMARK 3 S31: 0.0255 S32: 0.1141 S33: 0.1720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27962 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 29.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3C2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM ZINC ACETATE, 100 MM SODIUM REMARK 280 CACODYLATE PH 6.5, 9 % (W/V) POLYETHYLENE GLYCOL 8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.05950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.62650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.05950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.62650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 HIS A 4 REMARK 465 THR A 5 REMARK 465 CYS A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 CYS A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 GLU A 13 REMARK 465 PHE A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 LYS A 225 REMARK 465 SER A 226 REMARK 465 CYS A 227 REMARK 465 ASP A 228 REMARK 465 LYS A 229 REMARK 465 THR A 230 REMARK 465 GLY A 231 REMARK 465 GLY A 232 REMARK 465 GLY A 233 REMARK 465 GLY A 234 REMARK 465 SER A 235 REMARK 465 GLY A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 GLY A 241 REMARK 465 GLY A 242 REMARK 465 GLY A 243 REMARK 465 GLY A 244 REMARK 465 SER A 245 REMARK 465 GLY A 246 REMARK 465 GLY A 247 REMARK 465 GLY A 248 REMARK 465 GLY A 249 REMARK 465 SER A 250 REMARK 465 GLY A 251 REMARK 465 GLY A 252 REMARK 465 GLY A 253 REMARK 465 GLY A 254 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 GLY A 257 REMARK 465 GLY A 258 REMARK 465 GLY A 259 REMARK 465 SER A 260 REMARK 465 GLY A 261 REMARK 465 GLY A 262 REMARK 465 GLY A 263 REMARK 465 GLY A 264 REMARK 465 SER A 265 REMARK 465 GLY A 266 REMARK 465 GLY A 267 REMARK 465 GLY A 268 REMARK 465 GLY A 269 REMARK 465 SER A 270 REMARK 465 CYS A 271 REMARK 465 PRO A 272 REMARK 465 SER A 273 REMARK 465 CYS A 274 REMARK 465 PRO A 275 REMARK 465 ALA A 276 REMARK 465 PRO A 277 REMARK 465 GLU A 278 REMARK 465 PHE A 279 REMARK 465 LEU A 280 REMARK 465 GLY A 281 REMARK 465 GLY A 490 REMARK 465 GLU A 491 REMARK 465 CYS A 492 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 647 O HOH A 675 2.11 REMARK 500 ND2 ASN A 321 OE1 GLU A 328 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 680 O HOH A 680 2555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 63 CD GLU A 63 OE2 0.111 REMARK 500 VAL A 64 C VAL A 64 O 0.261 REMARK 500 ASN A 164 C ASN A 164 O 0.124 REMARK 500 GLU A 168 CD GLU A 168 OE2 0.071 REMARK 500 GLU A 328 CD GLU A 328 OE2 0.084 REMARK 500 HIS A 330 CB HIS A 330 CG 0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 63 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 82.44 -150.37 REMARK 500 GLU A 63 147.13 -34.57 REMARK 500 SER A 110 -114.62 72.09 REMARK 500 SER A 111 128.09 -170.40 REMARK 500 ASP A 310 37.18 71.39 REMARK 500 SER A 375 -70.10 -142.71 REMARK 500 PRO A 419 -169.38 -66.68 REMARK 500 ASP A 458 152.30 -49.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 50 PRO A 51 131.25 REMARK 500 GLY A 107 LEU A 108 133.32 REMARK 500 ASP A 315 PRO A 316 133.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 64 14.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 74 OE1 REMARK 620 2 GLU A 74 OE2 54.4 REMARK 620 3 HIS A 90 NE2 33.9 41.4 REMARK 620 4 HIS A 215 NE2 30.7 44.1 4.0 REMARK 620 5 HOH A 652 O 34.3 43.3 2.0 3.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 339 OE1 REMARK 620 2 GLU A 339 OE2 54.9 REMARK 620 3 HIS A 355 NE2 39.2 22.5 REMARK 620 4 HIS A 480 NE2 36.0 26.3 4.0 REMARK 620 5 HOH A 678 O 40.1 23.6 2.0 4.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 DBREF 6HYG A 1 492 PDB 6HYG 6HYG 1 492 SEQRES 1 A 492 ASP LYS THR HIS THR CYS PRO SER CYS PRO ALA PRO GLU SEQRES 2 A 492 PHE LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 3 A 492 PRO LYS ASP THR LEU MET ILE SER ARG THR PRO GLU VAL SEQRES 4 A 492 THR CYS VAL VAL VAL ASP VAL SER GLN GLU ASP PRO GLU SEQRES 5 A 492 VAL GLN PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 6 A 492 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN PHE ASN SER SEQRES 7 A 492 LYS TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 8 A 492 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 9 A 492 ASN LYS GLY LEU PRO SER SER ILE GLU LYS THR ILE SER SEQRES 10 A 492 LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR SEQRES 11 A 492 LEU PRO PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SEQRES 12 A 492 SER LEU SER CYS ALA VAL LYS GLY PHE TYR PRO SER ASP SEQRES 13 A 492 ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN SEQRES 14 A 492 ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SEQRES 15 A 492 SER PHE PHE LEU VAL SER LYS LEU THR VAL ASP LYS SER SEQRES 16 A 492 ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET SEQRES 17 A 492 HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SEQRES 18 A 492 SER LEU SER LYS SER CYS ASP LYS THR GLY GLY GLY GLY SEQRES 19 A 492 SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY SEQRES 20 A 492 GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER SEQRES 21 A 492 GLY GLY GLY GLY SER GLY GLY GLY GLY SER CYS PRO SER SEQRES 22 A 492 CYS PRO ALA PRO GLU PHE LEU GLY GLY PRO SER VAL PHE SEQRES 23 A 492 LEU PHE PRO PRO LYS PRO LYS ASP THR LEU MET ILE SER SEQRES 24 A 492 ARG THR PRO GLU VAL THR CYS VAL VAL VAL ASP VAL SER SEQRES 25 A 492 GLN GLU ASP PRO GLU VAL GLN PHE ASN TRP TYR VAL ASP SEQRES 26 A 492 GLY VAL GLU VAL HIS ASN ALA LYS THR LYS PRO ARG GLU SEQRES 27 A 492 GLU GLN PHE ASN SER ASP TYR ARG VAL VAL SER VAL LEU SEQRES 28 A 492 THR VAL LEU HIS GLN ASP TRP LEU ASN GLY LYS GLU TYR SEQRES 29 A 492 LYS CYS LYS VAL SER ASN LYS GLY LEU PRO SER SER ILE SEQRES 30 A 492 GLU LYS THR ILE SER LYS ALA LYS GLY GLN PRO ARG GLU SEQRES 31 A 492 PRO GLN VAL TYR THR LEU PRO PRO SER ARG GLU GLU MET SEQRES 32 A 492 THR LYS ASN GLN VAL SER LEU TRP CYS LEU VAL LYS GLY SEQRES 33 A 492 PHE TYR PRO SER ASP ILE ALA VAL GLU TRP GLU SER ASN SEQRES 34 A 492 GLY GLN PRO GLU ASN ASN TYR LYS THR THR PRO PRO VAL SEQRES 35 A 492 LEU ASP SER ASP GLY SER PHE PHE LEU TYR SER LYS LEU SEQRES 36 A 492 THR VAL ASP LYS SER ARG TRP GLN GLN GLY ASN VAL PHE SEQRES 37 A 492 SER CYS SER VAL MET HIS GLU ALA LEU HIS ASN HIS TYR SEQRES 38 A 492 THR GLN LYS SER LEU SER LEU SER GLY GLU CYS HET ZN A 501 1 HET ZN A 502 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *92(H2 O) HELIX 1 AA1 LYS A 26 MET A 32 1 7 HELIX 2 AA2 LEU A 89 ASN A 95 1 7 HELIX 3 AA3 SER A 134 LYS A 140 5 7 HELIX 4 AA4 LYS A 194 GLN A 199 1 6 HELIX 5 AA5 LEU A 212 ASN A 214 5 3 HELIX 6 AA6 LYS A 291 MET A 297 1 7 HELIX 7 AA7 LEU A 354 ASN A 360 1 7 HELIX 8 AA8 SER A 399 LYS A 405 5 7 HELIX 9 AA9 LYS A 459 GLY A 465 1 7 HELIX 10 AB1 LEU A 477 ASN A 479 5 3 SHEET 1 AA1 4 SER A 19 PHE A 23 0 SHEET 2 AA1 4 GLU A 38 VAL A 46 -1 O VAL A 42 N PHE A 21 SHEET 3 AA1 4 TYR A 80 THR A 87 -1 O SER A 84 N CYS A 41 SHEET 4 AA1 4 LYS A 68 THR A 69 -1 N LYS A 68 O VAL A 85 SHEET 1 AA2 4 SER A 19 PHE A 23 0 SHEET 2 AA2 4 GLU A 38 VAL A 46 -1 O VAL A 42 N PHE A 21 SHEET 3 AA2 4 TYR A 80 THR A 87 -1 O SER A 84 N CYS A 41 SHEET 4 AA2 4 GLU A 73 GLU A 74 -1 N GLU A 73 O ARG A 81 SHEET 1 AA3 4 VAL A 62 VAL A 64 0 SHEET 2 AA3 4 GLN A 54 VAL A 59 -1 N VAL A 59 O VAL A 62 SHEET 3 AA3 4 TYR A 99 SER A 104 -1 O SER A 104 N GLN A 54 SHEET 4 AA3 4 ILE A 112 ILE A 116 -1 O ILE A 116 N TYR A 99 SHEET 1 AA4 4 GLN A 127 LEU A 131 0 SHEET 2 AA4 4 GLN A 142 PHE A 152 -1 O ALA A 148 N TYR A 129 SHEET 3 AA4 4 PHE A 184 ASP A 193 -1 O VAL A 192 N VAL A 143 SHEET 4 AA4 4 TYR A 171 THR A 173 -1 N LYS A 172 O LYS A 189 SHEET 1 AA5 4 GLN A 127 LEU A 131 0 SHEET 2 AA5 4 GLN A 142 PHE A 152 -1 O ALA A 148 N TYR A 129 SHEET 3 AA5 4 PHE A 184 ASP A 193 -1 O VAL A 192 N VAL A 143 SHEET 4 AA5 4 VAL A 177 LEU A 178 -1 N VAL A 177 O PHE A 185 SHEET 1 AA6 4 GLN A 166 GLU A 168 0 SHEET 2 AA6 4 ALA A 158 SER A 163 -1 N SER A 163 O GLN A 166 SHEET 3 AA6 4 PHE A 203 MET A 208 -1 O SER A 206 N GLU A 160 SHEET 4 AA6 4 TYR A 216 LEU A 221 -1 O LEU A 221 N PHE A 203 SHEET 1 AA7 4 SER A 284 PHE A 288 0 SHEET 2 AA7 4 GLU A 303 VAL A 311 -1 O THR A 305 N PHE A 288 SHEET 3 AA7 4 TYR A 345 THR A 352 -1 O VAL A 347 N VAL A 308 SHEET 4 AA7 4 LYS A 333 THR A 334 -1 N LYS A 333 O VAL A 350 SHEET 1 AA8 4 SER A 284 PHE A 288 0 SHEET 2 AA8 4 GLU A 303 VAL A 311 -1 O THR A 305 N PHE A 288 SHEET 3 AA8 4 TYR A 345 THR A 352 -1 O VAL A 347 N VAL A 308 SHEET 4 AA8 4 GLU A 338 GLU A 339 -1 N GLU A 338 O ARG A 346 SHEET 1 AA9 4 VAL A 327 VAL A 329 0 SHEET 2 AA9 4 GLN A 319 VAL A 324 -1 N VAL A 324 O VAL A 327 SHEET 3 AA9 4 TYR A 364 SER A 369 -1 O LYS A 367 N ASN A 321 SHEET 4 AA9 4 ILE A 377 ILE A 381 -1 O ILE A 381 N TYR A 364 SHEET 1 AB1 4 GLN A 392 LEU A 396 0 SHEET 2 AB1 4 GLN A 407 PHE A 417 -1 O LYS A 415 N GLN A 392 SHEET 3 AB1 4 PHE A 449 ASP A 458 -1 O LEU A 455 N LEU A 410 SHEET 4 AB1 4 TYR A 436 THR A 438 -1 N LYS A 437 O LYS A 454 SHEET 1 AB2 4 GLN A 392 LEU A 396 0 SHEET 2 AB2 4 GLN A 407 PHE A 417 -1 O LYS A 415 N GLN A 392 SHEET 3 AB2 4 PHE A 449 ASP A 458 -1 O LEU A 455 N LEU A 410 SHEET 4 AB2 4 VAL A 442 LEU A 443 -1 N VAL A 442 O PHE A 450 SHEET 1 AB3 4 GLN A 431 GLU A 433 0 SHEET 2 AB3 4 ALA A 423 SER A 428 -1 N TRP A 426 O GLU A 433 SHEET 3 AB3 4 PHE A 468 MET A 473 -1 O SER A 471 N GLU A 425 SHEET 4 AB3 4 TYR A 481 LEU A 486 -1 O THR A 482 N VAL A 472 SSBOND 1 CYS A 41 CYS A 101 1555 1555 2.05 SSBOND 2 CYS A 147 CYS A 205 1555 1555 2.01 SSBOND 3 CYS A 306 CYS A 366 1555 1555 2.04 SSBOND 4 CYS A 412 CYS A 470 1555 1555 2.04 LINK OE1 GLU A 74 ZN ZN A 501 1555 4546 2.63 LINK OE2 GLU A 74 ZN ZN A 501 1555 4546 1.94 LINK NE2 HIS A 90 ZN ZN A 501 1555 1555 1.87 LINK NE2 HIS A 215 ZN ZN A 501 1555 1555 2.06 LINK OE1 GLU A 339 ZN ZN A 502 1555 4555 2.61 LINK OE2 GLU A 339 ZN ZN A 502 1555 4555 1.83 LINK NE2 HIS A 355 ZN ZN A 502 1555 1555 1.99 LINK NE2 HIS A 480 ZN ZN A 502 1555 1555 2.15 LINK ZN ZN A 501 O HOH A 652 1555 4556 2.02 LINK ZN ZN A 502 O HOH A 678 1555 1555 2.11 CISPEP 1 PRO A 51 GLU A 52 0 14.72 CISPEP 2 TYR A 153 PRO A 154 0 -9.30 CISPEP 3 PRO A 316 GLU A 317 0 -6.41 CISPEP 4 TYR A 418 PRO A 419 0 -15.61 SITE 1 AC1 4 GLU A 74 HIS A 90 HIS A 215 HOH A 652 SITE 1 AC2 4 GLU A 339 HIS A 355 HIS A 480 HOH A 678 CRYST1 136.119 63.253 77.551 90.00 90.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007347 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012895 0.00000