HEADER SIGNALING PROTEIN 22-OCT-18 6HYO TITLE STRUCTURE OF ULK1 LIR MOTIF BOUND TO GABARAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE ULK1,GAMMA-AMINOBUTYRIC COMPND 3 ACID RECEPTOR-ASSOCIATED PROTEIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: AUTOPHAGY-RELATED PROTEIN 1 HOMOLOG,HATG1,UNC-51-LIKE KINASE COMPND 6 1,GABA(A) RECEPTOR-ASSOCIATED PROTEIN,MM46; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ULK1, KIAA0722, GABARAP, FLC3B, HT004; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY, ATG8, LIR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MOUILLERON,M.WIRTH,W.ZHANG,N.O'REILLY,S.TOOZE,T.JOHANSEN,M.RAZI, AUTHOR 2 L.NYONI,D.JOSHI REVDAT 3 24-JAN-24 6HYO 1 REMARK REVDAT 2 15-MAY-19 6HYO 1 JRNL REVDAT 1 08-MAY-19 6HYO 0 JRNL AUTH M.WIRTH,W.ZHANG,M.RAZI,L.NYONI,D.JOSHI,N.O'REILLY, JRNL AUTH 2 T.JOHANSEN,S.A.TOOZE,S.MOUILLERON JRNL TITL MOLECULAR DETERMINANTS REGULATING SELECTIVE BINDING OF JRNL TITL 2 AUTOPHAGY ADAPTERS AND RECEPTORS TO ATG8 PROTEINS. JRNL REF NAT COMMUN V. 10 2055 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31053714 JRNL DOI 10.1038/S41467-019-10059-6 REMARK 2 REMARK 2 RESOLUTION. 1.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 74519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 3593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1491 - 3.1702 1.00 2859 138 0.1576 0.1775 REMARK 3 2 3.1702 - 2.5164 1.00 2809 123 0.1624 0.1823 REMARK 3 3 2.5164 - 2.1983 1.00 2743 142 0.1492 0.1623 REMARK 3 4 2.1983 - 1.9973 1.00 2740 152 0.1303 0.1546 REMARK 3 5 1.9973 - 1.8542 1.00 2746 120 0.1288 0.1425 REMARK 3 6 1.8542 - 1.7449 1.00 2751 135 0.1220 0.1388 REMARK 3 7 1.7449 - 1.6575 1.00 2702 165 0.1162 0.1358 REMARK 3 8 1.6575 - 1.5853 1.00 2721 136 0.1089 0.1319 REMARK 3 9 1.5853 - 1.5243 1.00 2742 140 0.1056 0.1288 REMARK 3 10 1.5243 - 1.4717 1.00 2718 137 0.1076 0.1180 REMARK 3 11 1.4717 - 1.4257 1.00 2710 126 0.1056 0.1523 REMARK 3 12 1.4257 - 1.3849 1.00 2703 159 0.1070 0.1335 REMARK 3 13 1.3849 - 1.3485 1.00 2748 116 0.1107 0.1267 REMARK 3 14 1.3485 - 1.3156 1.00 2672 168 0.1143 0.1388 REMARK 3 15 1.3156 - 1.2856 1.00 2735 119 0.1183 0.1621 REMARK 3 16 1.2856 - 1.2583 1.00 2705 141 0.1245 0.1578 REMARK 3 17 1.2583 - 1.2331 1.00 2748 123 0.1352 0.1616 REMARK 3 18 1.2331 - 1.2098 1.00 2710 149 0.1272 0.1516 REMARK 3 19 1.2098 - 1.1882 1.00 2694 146 0.1377 0.1494 REMARK 3 20 1.1882 - 1.1681 1.00 2700 133 0.1450 0.1589 REMARK 3 21 1.1681 - 1.1492 1.00 2673 137 0.1550 0.2056 REMARK 3 22 1.1492 - 1.1316 1.00 2765 107 0.1657 0.1658 REMARK 3 23 1.1316 - 1.1149 1.00 2712 132 0.1801 0.2075 REMARK 3 24 1.1149 - 1.0992 1.00 2704 145 0.2101 0.2069 REMARK 3 25 1.0992 - 1.0844 1.00 2722 125 0.2273 0.2628 REMARK 3 26 1.0844 - 1.0703 1.00 2694 179 0.2486 0.2412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1284 REMARK 3 ANGLE : 1.392 1738 REMARK 3 CHIRALITY : 0.111 177 REMARK 3 PLANARITY : 0.011 227 REMARK 3 DIHEDRAL : 23.778 524 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74520 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.070 REMARK 200 RESOLUTION RANGE LOW (A) : 41.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.60 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 1.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GNU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2. 0.1 M NA CACODYLATE PH REMARK 280 6.5, 20% PEG1000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.36000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 50.36000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 50.36000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 50.36000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 50.36000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 50.36000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 50.36000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 50.36000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 50.36000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 50.36000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 50.36000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 50.36000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 50.36000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 50.36000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 50.36000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 50.36000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 50.36000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 50.36000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 50.36000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 50.36000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 50.36000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 50.36000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 50.36000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 50.36000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 50.36000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 50.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 471 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -19 REMARK 465 PRO A -18 REMARK 465 THR A -17 REMARK 465 MET A -16 REMARK 465 GLY A -15 REMARK 465 THR A -14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A -13 CG OD1 OD2 REMARK 470 GLN A -5 CG CD OE1 NE2 REMARK 470 LYS A 2 CE NZ REMARK 470 LYS A 13 CD CE NZ REMARK 470 LYS A 46 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A -5 73.78 -101.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 471 DISTANCE = 7.18 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 208 DBREF 6HYO A -14 -2 UNP O75385 ULK1_HUMAN 354 366 DBREF 6HYO A 1 117 UNP O95166 GBRAP_HUMAN 1 117 SEQADV 6HYO GLY A -19 UNP O75385 EXPRESSION TAG SEQADV 6HYO PRO A -18 UNP O75385 EXPRESSION TAG SEQADV 6HYO THR A -17 UNP O75385 EXPRESSION TAG SEQADV 6HYO MET A -16 UNP O75385 EXPRESSION TAG SEQADV 6HYO GLY A -15 UNP O75385 EXPRESSION TAG SEQADV 6HYO GLY A -1 UNP O75385 LINKER SEQADV 6HYO SER A 0 UNP O75385 LINKER SEQRES 1 A 137 GLY PRO THR MET GLY THR ASP ASP PHE VAL MET VAL PRO SEQRES 2 A 137 ALA GLN PHE PRO GLY GLY SER MET LYS PHE VAL TYR LYS SEQRES 3 A 137 GLU GLU HIS PRO PHE GLU LYS ARG ARG SER GLU GLY GLU SEQRES 4 A 137 LYS ILE ARG LYS LYS TYR PRO ASP ARG VAL PRO VAL ILE SEQRES 5 A 137 VAL GLU LYS ALA PRO LYS ALA ARG ILE GLY ASP LEU ASP SEQRES 6 A 137 LYS LYS LYS TYR LEU VAL PRO SER ASP LEU THR VAL GLY SEQRES 7 A 137 GLN PHE TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU ARG SEQRES 8 A 137 ALA GLU ASP ALA LEU PHE PHE PHE VAL ASN ASN VAL ILE SEQRES 9 A 137 PRO PRO THR SER ALA THR MET GLY GLN LEU TYR GLN GLU SEQRES 10 A 137 HIS HIS GLU GLU ASP PHE PHE LEU TYR ILE ALA TYR SER SEQRES 11 A 137 ASP GLU SER VAL TYR GLY LEU HET GOL A 201 6 HET PEG A 202 7 HET PEG A 203 7 HET PEG A 204 7 HET PEG A 205 7 HET PEG A 206 7 HET PEG A 207 7 HET EDO A 208 4 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 PEG 6(C4 H10 O3) FORMUL 9 EDO C2 H6 O2 FORMUL 10 HOH *171(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 ILE A 68 1 13 HELIX 4 AA4 THR A 90 HIS A 99 1 10 SHEET 1 AA1 4 LYS A 48 PRO A 52 0 SHEET 2 AA1 4 ARG A 28 LYS A 35 -1 N VAL A 31 O TYR A 49 SHEET 3 AA1 4 LEU A 105 SER A 110 1 O ILE A 107 N ILE A 32 SHEET 4 AA1 4 PHE A 77 PHE A 79 -1 N PHE A 77 O SER A 110 SITE 1 AC1 9 ARG A 22 PRO A 26 ASP A 27 SER A 53 SITE 2 AC1 9 GLY A 92 TYR A 95 GLN A 96 HOH A 303 SITE 3 AC1 9 HOH A 304 SITE 1 AC2 5 PHE A 11 ALA A 72 GLU A 73 HOH A 337 SITE 2 AC2 5 HOH A 423 SITE 1 AC3 8 GLN A -5 LYS A 23 LYS A 24 PRO A 26 SITE 2 AC3 8 ASP A 27 HOH A 351 HOH A 378 HOH A 389 SITE 1 AC4 5 VAL A -10 LYS A 38 LYS A 46 ARG A 67 SITE 2 AC4 5 HOH A 395 SITE 1 AC5 8 VAL A 4 GLU A 34 LYS A 35 LYS A 47 SITE 2 AC5 8 HOH A 307 HOH A 313 HOH A 327 HOH A 341 SITE 1 AC6 4 ALA A -6 PHE A -4 ASP A 54 PEG A 207 SITE 1 AC7 4 ALA A -6 PHE A -4 ASP A 54 PEG A 206 SITE 1 AC8 5 ASP A -12 LYS A 46 LYS A 47 LYS A 48 SITE 2 AC8 5 HOH A 317 CRYST1 100.720 100.720 100.720 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009929 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009929 0.00000