HEADER ISOMERASE 23-OCT-18 6HZN TITLE CRYSTAL STRUCTURE OF HUMAN DERMATAN SULFATE EPIMERASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DERMATAN-SULFATE EPIMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DS EPIMERASE,CHONDROITIN-GLUCURONATE 5-EPIMERASE,SQUAMOUS COMPND 5 CELL CARCINOMA ANTIGEN RECOGNIZED BY T-CELLS 2,SART-2; COMPND 6 EC: 5.1.3.19; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DSE, SART2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK-293; SOURCE 10 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1573 KEYWDS EPIMERASE, GOLGI, GLYCOSAMINOGLYCANS, CHONDROITIN SULFATE, DERMATAN KEYWDS 2 SULFATE, BIOSYNTHETIC PROTEIN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HASAN,J.UNGE,G.WESTERGREN-THORSSON,U.ELLERVIK,U.MUELLER, AUTHOR 2 A.MALMSTROM,E.TYKESSON REVDAT 4 01-MAY-24 6HZN 1 REMARK REVDAT 3 16-DEC-20 6HZN 1 JRNL HETSYN LINK REVDAT 2 29-JUL-20 6HZN 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 22-JAN-20 6HZN 0 JRNL AUTH M.HASAN,H.KHAKZAD,L.HAPPONEN,A.SUNDIN,J.UNGE,U.MUELLER, JRNL AUTH 2 J.MALMSTROM,G.WESTERGREN-THORSSON,L.MALMSTROM,U.ELLERVIK, JRNL AUTH 3 A.MALMSTROM,E.TYKESSON JRNL TITL THE STRUCTURE OF HUMAN DERMATAN SULFATE EPIMERASE 1 JRNL TITL 2 EMPHASIZES THE IMPORTANCE OF C5-EPIMERIZATION OF GLUCURONIC JRNL TITL 3 ACID IN HIGHER ORGANISMS JRNL REF CHEM SCI 2020 JRNL REFN ESSN 2041-6539 JRNL DOI 10.1039/D0SC05971D REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 66000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5834 - 6.8476 1.00 2907 159 0.1670 0.1859 REMARK 3 2 6.8476 - 5.4375 1.00 2803 131 0.1826 0.2305 REMARK 3 3 5.4375 - 4.7508 1.00 2791 129 0.1481 0.1834 REMARK 3 4 4.7508 - 4.3167 1.00 2753 141 0.1306 0.1663 REMARK 3 5 4.3167 - 4.0075 1.00 2745 147 0.1415 0.1726 REMARK 3 6 4.0075 - 3.7713 1.00 2740 146 0.1533 0.1700 REMARK 3 7 3.7713 - 3.5825 1.00 2724 145 0.1621 0.1923 REMARK 3 8 3.5825 - 3.4266 1.00 2722 147 0.1802 0.2179 REMARK 3 9 3.4266 - 3.2947 1.00 2715 151 0.1955 0.2524 REMARK 3 10 3.2947 - 3.1810 1.00 2720 143 0.1917 0.2309 REMARK 3 11 3.1810 - 3.0816 1.00 2729 137 0.1887 0.2026 REMARK 3 12 3.0816 - 2.9935 1.00 2698 118 0.1892 0.2390 REMARK 3 13 2.9935 - 2.9147 1.00 2727 150 0.1855 0.2083 REMARK 3 14 2.9147 - 2.8436 1.00 2694 153 0.2028 0.2366 REMARK 3 15 2.8436 - 2.7790 1.00 2690 156 0.2149 0.2530 REMARK 3 16 2.7790 - 2.7199 1.00 2671 149 0.2482 0.2826 REMARK 3 17 2.7199 - 2.6654 1.00 2701 156 0.2747 0.3104 REMARK 3 18 2.6654 - 2.6152 1.00 2716 138 0.2665 0.3142 REMARK 3 19 2.6152 - 2.5685 1.00 2705 122 0.2636 0.2920 REMARK 3 20 2.5685 - 2.5249 1.00 2721 144 0.2750 0.3264 REMARK 3 21 2.5249 - 2.4842 1.00 2670 139 0.2883 0.3191 REMARK 3 22 2.4842 - 2.4460 1.00 2733 124 0.3111 0.3651 REMARK 3 23 2.4460 - 2.4100 1.00 2653 147 0.3168 0.3526 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6344 REMARK 3 ANGLE : 0.775 8646 REMARK 3 CHIRALITY : 0.050 928 REMARK 3 PLANARITY : 0.005 1098 REMARK 3 DIHEDRAL : 6.531 3690 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 175.0353 79.4676 36.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.5394 T22: 0.3718 REMARK 3 T33: 0.6090 T12: -0.0218 REMARK 3 T13: -0.0264 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.7621 L22: 1.5566 REMARK 3 L33: 4.0799 L12: 0.5565 REMARK 3 L13: -0.3394 L23: -0.6605 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.0206 S13: 0.0408 REMARK 3 S21: -0.1019 S22: -0.0400 S23: -0.2101 REMARK 3 S31: 0.3929 S32: 0.1082 S33: 0.0470 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 501 ) REMARK 3 ORIGIN FOR THE GROUP (A): 156.0672 77.3446 42.6566 REMARK 3 T TENSOR REMARK 3 T11: 0.5692 T22: 0.4904 REMARK 3 T33: 0.5798 T12: -0.0899 REMARK 3 T13: -0.0097 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.4539 L22: 1.0890 REMARK 3 L33: 1.3197 L12: 0.6926 REMARK 3 L13: -0.3744 L23: -0.3114 REMARK 3 S TENSOR REMARK 3 S11: 0.0296 S12: -0.0462 S13: 0.2059 REMARK 3 S21: -0.0234 S22: 0.0276 S23: 0.1200 REMARK 3 S31: 0.2407 S32: -0.3131 S33: -0.0615 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 502 THROUGH 611 ) REMARK 3 ORIGIN FOR THE GROUP (A): 132.4231 63.7304 38.6783 REMARK 3 T TENSOR REMARK 3 T11: 0.7731 T22: 0.9958 REMARK 3 T33: 0.6829 T12: -0.4298 REMARK 3 T13: -0.0612 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 2.0823 L22: 4.1940 REMARK 3 L33: 2.0880 L12: -0.8859 REMARK 3 L13: -0.5472 L23: 0.6806 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.3481 S13: 0.2335 REMARK 3 S21: -0.4592 S22: 0.1293 S23: 0.4891 REMARK 3 S31: 0.1377 S32: -0.6568 S33: -0.0685 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 612 THROUGH 766 ) REMARK 3 ORIGIN FOR THE GROUP (A): 139.0204 65.4889 45.2998 REMARK 3 T TENSOR REMARK 3 T11: 0.7036 T22: 0.8222 REMARK 3 T33: 0.6707 T12: -0.2287 REMARK 3 T13: -0.0426 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.7714 L22: 2.0755 REMARK 3 L33: 0.8382 L12: 1.6966 REMARK 3 L13: -0.3223 L23: -0.3717 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: 0.0735 S13: 0.2746 REMARK 3 S21: 0.1008 S22: 0.1528 S23: 0.2643 REMARK 3 S31: 0.3599 S32: -0.5167 S33: -0.0835 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200009760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97967 REMARK 200 MONOCHROMATOR : SI (111), DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 48.574 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.030 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CRANK2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE 200 MM, MES 0.1 M (PH REMARK 280 6.5), GLYCEROL ETHOXYLATE 30% V/V, XYLITOL 6%, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.47250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.47250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 91.33800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 106.95700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 91.33800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 106.95700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.47250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 91.33800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 106.95700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.47250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 91.33800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 106.95700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1021 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 23 REMARK 465 THR A 767 REMARK 465 ALA A 768 REMARK 465 SER A 769 REMARK 465 PHE A 770 REMARK 465 ARG A 771 REMARK 465 LYS A 772 REMARK 465 THR A 773 REMARK 465 ALA A 774 REMARK 465 GLU A 775 REMARK 465 HIS A 776 REMARK 465 HIS A 777 REMARK 465 HIS A 778 REMARK 465 HIS A 779 REMARK 465 HIS A 780 REMARK 465 HIS A 781 REMARK 465 HIS A 782 REMARK 465 HIS A 783 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 513 O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 76 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 641 O HOH A 901 2.13 REMARK 500 NZ LYS A 728 OG SER A 730 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 45 -25.45 -154.81 REMARK 500 SER A 62 -53.64 -137.38 REMARK 500 PHE A 199 11.98 -141.44 REMARK 500 ALA A 312 -168.28 66.26 REMARK 500 ASN A 315 -156.20 -92.53 REMARK 500 ASN A 317 -88.45 -152.39 REMARK 500 VAL A 333 -62.65 -129.90 REMARK 500 ASN A 336 -3.61 -142.27 REMARK 500 SER A 419 101.97 -163.34 REMARK 500 LYS A 441 61.03 -117.60 REMARK 500 PRO A 453 74.58 -66.24 REMARK 500 PHE A 467 -71.16 -105.99 REMARK 500 LEU A 472 -144.39 -71.53 REMARK 500 SER A 493 -160.05 -108.85 REMARK 500 CYS A 494 -160.23 -77.26 REMARK 500 SER A 496 -125.04 60.35 REMARK 500 SER A 507 10.66 55.79 REMARK 500 GLN A 522 118.37 -163.60 REMARK 500 ALA A 528 113.56 -161.38 REMARK 500 THR A 634 -158.85 -82.40 REMARK 500 SER A 655 -154.39 55.04 REMARK 500 ASP A 679 -158.05 -154.84 REMARK 500 GLN A 706 -11.71 -142.16 REMARK 500 ASP A 715 -73.58 -27.25 REMARK 500 ASP A 722 -160.40 -109.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 486 SER A 487 -148.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 810 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 452 ND1 REMARK 620 2 GLU A 470 OE1 159.3 REMARK 620 3 ASN A 481 OD1 92.2 108.5 REMARK 620 4 HOH A 902 O 91.8 67.5 175.9 REMARK 620 5 HOH A 904 O 97.6 85.0 86.9 93.6 REMARK 620 6 HOH A 907 O 98.4 81.4 88.8 89.6 163.6 REMARK 620 N 1 2 3 4 5 DBREF 6HZN A 23 775 UNP Q9UL01 DSE_HUMAN 23 775 SEQADV 6HZN HIS A 776 UNP Q9UL01 EXPRESSION TAG SEQADV 6HZN HIS A 777 UNP Q9UL01 EXPRESSION TAG SEQADV 6HZN HIS A 778 UNP Q9UL01 EXPRESSION TAG SEQADV 6HZN HIS A 779 UNP Q9UL01 EXPRESSION TAG SEQADV 6HZN HIS A 780 UNP Q9UL01 EXPRESSION TAG SEQADV 6HZN HIS A 781 UNP Q9UL01 EXPRESSION TAG SEQADV 6HZN HIS A 782 UNP Q9UL01 EXPRESSION TAG SEQADV 6HZN HIS A 783 UNP Q9UL01 EXPRESSION TAG SEQRES 1 A 761 TYR ILE THR ASP GLU ASN PRO GLU VAL MET ILE PRO PHE SEQRES 2 A 761 THR ASN ALA ASN TYR ASP SER HIS PRO MET LEU TYR PHE SEQRES 3 A 761 SER ARG ALA GLU VAL ALA GLU LEU GLN LEU ARG ALA ALA SEQRES 4 A 761 SER SER HIS GLU HIS ILE ALA ALA ARG LEU THR GLU ALA SEQRES 5 A 761 VAL HIS THR MET LEU SER SER PRO LEU GLU TYR LEU PRO SEQRES 6 A 761 PRO TRP ASP PRO LYS ASP TYR SER ALA ARG TRP ASN GLU SEQRES 7 A 761 ILE PHE GLY ASN ASN LEU GLY ALA LEU ALA MET PHE CYS SEQRES 8 A 761 VAL LEU TYR PRO GLU ASN ILE GLU ALA ARG ASP MET ALA SEQRES 9 A 761 LYS ASP TYR MET GLU ARG MET ALA ALA GLN PRO SER TRP SEQRES 10 A 761 LEU VAL LYS ASP ALA PRO TRP ASP GLU VAL PRO LEU ALA SEQRES 11 A 761 HIS SER LEU VAL GLY PHE ALA THR ALA TYR ASP PHE LEU SEQRES 12 A 761 TYR ASN TYR LEU SER LYS THR GLN GLN GLU LYS PHE LEU SEQRES 13 A 761 GLU VAL ILE ALA ASN ALA SER GLY TYR MET TYR GLU THR SEQRES 14 A 761 SER TYR ARG ARG GLY TRP GLY PHE GLN TYR LEU HIS ASN SEQRES 15 A 761 HIS GLN PRO THR ASN CYS MET ALA LEU LEU THR GLY SER SEQRES 16 A 761 LEU VAL LEU MET ASN GLN GLY TYR LEU GLN GLU ALA TYR SEQRES 17 A 761 LEU TRP THR LYS GLN VAL LEU THR ILE MET GLU LYS SER SEQRES 18 A 761 LEU VAL LEU LEU ARG GLU VAL THR ASP GLY SER LEU TYR SEQRES 19 A 761 GLU GLY VAL ALA TYR GLY SER TYR THR THR ARG SER LEU SEQRES 20 A 761 PHE GLN TYR MET PHE LEU VAL GLN ARG HIS PHE ASN ILE SEQRES 21 A 761 ASN HIS PHE GLY HIS PRO TRP LEU LYS GLN HIS PHE ALA SEQRES 22 A 761 PHE MET TYR ARG THR ILE LEU PRO GLY PHE GLN ARG THR SEQRES 23 A 761 VAL ALA ILE ALA ASP SER ASN TYR ASN TRP PHE TYR GLY SEQRES 24 A 761 PRO GLU SER GLN LEU VAL PHE LEU ASP LYS PHE VAL MET SEQRES 25 A 761 ARG ASN GLY SER GLY ASN TRP LEU ALA ASP GLN ILE ARG SEQRES 26 A 761 ARG ASN ARG VAL VAL GLU GLY PRO GLY THR PRO SER LYS SEQRES 27 A 761 GLY GLN ARG TRP CYS THR LEU HIS THR GLU PHE LEU TRP SEQRES 28 A 761 TYR ASP GLY SER LEU LYS SER VAL PRO PRO PRO ASP PHE SEQRES 29 A 761 GLY THR PRO THR LEU HIS TYR PHE GLU ASP TRP GLY VAL SEQRES 30 A 761 VAL THR TYR GLY SER ALA LEU PRO ALA GLU ILE ASN ARG SEQRES 31 A 761 SER PHE LEU SER PHE LYS SER GLY LYS LEU GLY GLY ARG SEQRES 32 A 761 ALA ILE TYR ASP ILE VAL HIS ARG ASN LYS TYR LYS ASP SEQRES 33 A 761 TRP ILE LYS GLY TRP ARG ASN PHE ASN ALA GLY HIS GLU SEQRES 34 A 761 HIS PRO ASP GLN ASN SER PHE THR PHE ALA PRO ASN GLY SEQRES 35 A 761 VAL PRO PHE ILE THR GLU ALA LEU TYR GLY PRO LYS TYR SEQRES 36 A 761 THR PHE PHE ASN ASN VAL LEU MET PHE SER PRO ALA VAL SEQRES 37 A 761 SER LYS SER CYS PHE SER PRO TRP VAL GLY GLN VAL THR SEQRES 38 A 761 GLU ASP CYS SER SER LYS TRP SER LYS TYR LYS HIS ASP SEQRES 39 A 761 LEU ALA ALA SER CYS GLN GLY ARG VAL VAL ALA ALA GLU SEQRES 40 A 761 GLU LYS ASN GLY VAL VAL PHE ILE ARG GLY GLU GLY VAL SEQRES 41 A 761 GLY ALA TYR ASN PRO GLN LEU ASN LEU LYS ASN VAL GLN SEQRES 42 A 761 ARG ASN LEU ILE LEU LEU HIS PRO GLN LEU LEU LEU LEU SEQRES 43 A 761 VAL ASP GLN ILE HIS LEU GLY GLU GLU SER PRO LEU GLU SEQRES 44 A 761 THR ALA ALA SER PHE PHE HIS ASN VAL ASP VAL PRO PHE SEQRES 45 A 761 GLU GLU THR VAL VAL ASP GLY VAL HIS GLY ALA PHE ILE SEQRES 46 A 761 ARG GLN ARG ASP GLY LEU TYR LYS MET TYR TRP MET ASP SEQRES 47 A 761 ASP THR GLY TYR SER GLU LYS ALA THR PHE ALA SER VAL SEQRES 48 A 761 THR TYR PRO ARG GLY TYR PRO TYR ASN GLY THR ASN TYR SEQRES 49 A 761 VAL ASN VAL THR MET HIS LEU ARG SER PRO ILE THR ARG SEQRES 50 A 761 ALA ALA TYR LEU PHE ILE GLY PRO SER ILE ASP VAL GLN SEQRES 51 A 761 SER PHE THR VAL HIS GLY ASP SER GLN GLN LEU ASP VAL SEQRES 52 A 761 PHE ILE ALA THR SER LYS HIS ALA TYR ALA THR TYR LEU SEQRES 53 A 761 TRP THR GLY GLU ALA THR GLY GLN SER ALA PHE ALA GLN SEQRES 54 A 761 VAL ILE ALA ASP ARG HIS LYS ILE LEU PHE ASP ARG ASN SEQRES 55 A 761 SER ALA ILE LYS SER SER ILE VAL PRO GLU VAL LYS ASP SEQRES 56 A 761 TYR ALA ALA ILE VAL GLU GLN ASN LEU GLN HIS PHE LYS SEQRES 57 A 761 PRO VAL PHE GLN LEU LEU GLU LYS GLN ILE LEU SER ARG SEQRES 58 A 761 VAL ARG ASN THR ALA SER PHE ARG LYS THR ALA GLU HIS SEQRES 59 A 761 HIS HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG A 803 14 HET NAG A 809 14 HET MN A 810 1 HET MES A 811 12 HET MES A 812 12 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 6 MN MN 2+ FORMUL 7 MES 2(C6 H13 N O4 S) FORMUL 9 HOH *153(H2 O) HELIX 1 AA1 SER A 49 ALA A 51 5 3 HELIX 2 AA2 GLU A 52 SER A 62 1 11 HELIX 3 AA3 HIS A 64 SER A 81 1 18 HELIX 4 AA4 SER A 81 LEU A 86 1 6 HELIX 5 AA5 ASP A 90 SER A 95 1 6 HELIX 6 AA6 GLU A 100 TYR A 116 1 17 HELIX 7 AA7 ASN A 119 ALA A 135 1 17 HELIX 8 AA8 GLU A 148 TYR A 166 1 19 HELIX 9 AA9 ASN A 167 LEU A 169 5 3 HELIX 10 AB1 SER A 170 SER A 192 1 23 HELIX 11 AB2 TYR A 193 ARG A 194 5 2 HELIX 12 AB3 ARG A 195 PHE A 199 5 5 HELIX 13 AB4 ASN A 204 GLN A 223 1 20 HELIX 14 AB5 TYR A 225 ARG A 248 1 24 HELIX 15 AB6 GLU A 257 ASN A 281 1 25 HELIX 16 AB7 HIS A 287 ARG A 299 1 13 HELIX 17 AB8 PRO A 322 VAL A 333 1 12 HELIX 18 AB9 GLY A 337 ARG A 350 1 14 HELIX 19 AC1 THR A 366 TYR A 374 1 9 HELIX 20 AC2 GLY A 423 ARG A 433 1 11 HELIX 21 AC3 LYS A 441 PHE A 446 5 6 HELIX 22 AC4 PRO A 462 VAL A 465 5 4 HELIX 23 AC5 TYR A 477 ASN A 481 5 5 HELIX 24 AC6 LYS A 514 ALA A 519 1 6 HELIX 25 AC7 VAL A 542 TYR A 545 5 4 HELIX 26 AC8 ASN A 546 LEU A 549 5 4 HELIX 27 AC9 ASP A 722 ALA A 726 5 5 HELIX 28 AD1 ASP A 737 GLN A 747 1 11 HELIX 29 AD2 PHE A 749 ASN A 766 1 18 SHEET 1 AA1 4 LEU A 391 PHE A 394 0 SHEET 2 AA1 4 VAL A 399 TYR A 402 -1 O VAL A 399 N PHE A 394 SHEET 3 AA1 4 PHE A 414 LYS A 418 -1 O PHE A 417 N VAL A 400 SHEET 4 AA1 4 SER A 457 ALA A 461 -1 O ALA A 461 N PHE A 414 SHEET 1 AA2 4 LEU A 484 PHE A 486 0 SHEET 2 AA2 4 THR A 582 ASN A 589 -1 O ALA A 584 N MET A 485 SHEET 3 AA2 4 THR A 644 HIS A 652 -1 O VAL A 649 N SER A 585 SHEET 4 AA2 4 THR A 629 VAL A 633 -1 N ALA A 631 O TYR A 646 SHEET 1 AA3 8 ARG A 524 LYS A 531 0 SHEET 2 AA3 8 VAL A 534 GLU A 540 -1 O VAL A 534 N LYS A 531 SHEET 3 AA3 8 LEU A 551 HIS A 562 -1 O LEU A 558 N ILE A 537 SHEET 4 AA3 8 LEU A 565 LEU A 574 -1 O LEU A 567 N ILE A 559 SHEET 5 AA3 8 ILE A 657 ILE A 665 -1 O TYR A 662 N LEU A 568 SHEET 6 AA3 8 GLY A 612 ASP A 620 -1 N LYS A 615 O ILE A 665 SHEET 7 AA3 8 VAL A 602 GLN A 609 -1 N ALA A 605 O MET A 616 SHEET 8 AA3 8 GLU A 595 VAL A 599 -1 N GLU A 595 O PHE A 606 SHEET 1 AA4 5 VAL A 671 GLY A 678 0 SHEET 2 AA4 5 GLN A 682 THR A 689 -1 O ALA A 688 N GLN A 672 SHEET 3 AA4 5 ALA A 693 TRP A 699 -1 O TYR A 694 N ILE A 687 SHEET 4 AA4 5 ALA A 710 ILE A 713 -1 O ILE A 713 N ALA A 695 SHEET 5 AA4 5 LYS A 718 PHE A 721 -1 O ILE A 719 N VAL A 712 LINK ND2 ASN A 183 C1 NAG A 803 1555 1555 1.44 LINK ND2 ASN A 336 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 642 C1 NAG A 809 1555 1555 1.45 LINK ND2 ASN A 648 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.49 LINK ND1 HIS A 452 MN MN A 810 1555 1555 2.35 LINK OE1 GLU A 470 MN MN A 810 1555 1555 2.18 LINK OD1 ASN A 481 MN MN A 810 1555 1555 2.17 LINK MN MN A 810 O HOH A 902 1555 1555 2.20 LINK MN MN A 810 O HOH A 904 1555 1555 2.19 LINK MN MN A 810 O HOH A 907 1555 1555 2.19 CISPEP 1 HIS A 43 PRO A 44 0 -3.71 CISPEP 2 GLY A 321 PRO A 322 0 3.50 CRYST1 182.676 213.914 86.945 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011502 0.00000