HEADER ISOMERASE 24-OCT-18 6I03 TITLE D10N VARIANT OF BETA-PHOSPHOGLUCOMUTASE FROM LACTOCOCCUS LACTIS TITLE 2 COMPLEXED WITH TETRAFLUOROALUMINATE AND BETA-G6P TO 1.02 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-PGM; COMPND 5 EC: 5.4.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. LACTIS IL1403; SOURCE 3 ORGANISM_TAXID: 272623; SOURCE 4 GENE: PGMB, LL0429, L0001; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHOGLUCOMUTASE, ISOMERASE, METAL FLUORIDE, TRANSITION STATE KEYWDS 2 ANALOG EXPDTA X-RAY DIFFRACTION AUTHOR A.J.ROBERTSON,J.P.WALTHO REVDAT 3 24-JAN-24 6I03 1 HETSYN REVDAT 2 29-JUL-20 6I03 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 20-NOV-19 6I03 0 JRNL AUTH A.J.ROBERTSON,C.BISSON,J.P.WALTHO JRNL TITL PROTON TRANSFER MODULATES THE ELECTROSTATIC ENVIRONMENT IN A JRNL TITL 2 GENERAL ACID-BASE CATALYZED PHOSPHORYL TRANSFER REACTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 101274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5373 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 330 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.055 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2022 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1909 ; 0.005 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2751 ; 1.507 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4452 ; 1.520 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 5.957 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;35.317 ;24.219 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ;11.849 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2288 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 380 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1035 ; 1.912 ; 1.342 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1034 ; 1.856 ; 1.339 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1302 ; 1.974 ; 2.018 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1303 ; 2.065 ; 2.024 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 987 ; 2.137 ; 1.556 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 987 ; 2.138 ; 1.556 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1450 ; 2.392 ; 2.251 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2019 ; 2.631 ;16.483 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1962 ; 2.451 ;15.982 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3930 ;24.172 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 140 ;19.127 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3984 ;24.744 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106736 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.020 REMARK 200 RESOLUTION RANGE LOW (A) : 37.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.91700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2WF6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24-34% PEG 4000 200 MM SODIUM ACETATE REMARK 280 50 MM TRIS, PH 7.5, PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.76000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.21000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.21000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.76000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 220 REMARK 465 LYS A 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 AL ALF A 301 O1 BG6 A 302 1.86 REMARK 500 OD1 ASP A 8 AL ALF A 301 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 207 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 -64.59 -102.64 REMARK 500 ASP A 15 38.66 -81.23 REMARK 500 ALA A 113 56.46 -118.58 REMARK 500 ALA A 142 45.17 -101.14 REMARK 500 ALA A 143 126.97 171.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 171 -12.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 628 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 629 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A 630 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A 631 DISTANCE = 8.75 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASN A 10 O 89.9 REMARK 620 3 ASP A 170 OD1 89.6 90.5 REMARK 620 4 HOH A 440 O 89.4 179.3 89.3 REMARK 620 5 HOH A 451 O 176.2 87.4 87.7 93.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 O REMARK 620 2 ASN A 127 OD1 91.0 REMARK 620 3 HOH A 473 O 97.8 82.6 REMARK 620 4 HOH A 491 O 83.2 75.0 157.6 REMARK 620 5 HOH A 561 O 80.2 171.0 100.5 101.7 REMARK 620 6 HOH A 577 O 162.9 105.2 79.2 106.1 83.8 REMARK 620 N 1 2 3 4 5 DBREF 6I03 A 1 221 UNP P71447 PGMB_LACLA 1 221 SEQADV 6I03 ACE A 0 UNP P71447 ACETYLATION SEQADV 6I03 ASN A 10 UNP P71447 ASP 10 ENGINEERED MUTATION SEQADV 6I03 ARG A 125 UNP P71447 LYS 125 ENGINEERED MUTATION SEQADV 6I03 HIS A 206 UNP P71447 TYR 206 ENGINEERED MUTATION SEQRES 1 A 222 ACE MET PHE LYS ALA VAL LEU PHE ASP LEU ASN GLY VAL SEQRES 2 A 222 ILE THR ASP THR ALA GLU TYR HIS PHE ARG ALA TRP LYS SEQRES 3 A 222 ALA LEU ALA GLU GLU ILE GLY ILE ASN GLY VAL ASP ARG SEQRES 4 A 222 GLN PHE ASN GLU GLN LEU LYS GLY VAL SER ARG GLU ASP SEQRES 5 A 222 SER LEU GLN LYS ILE LEU ASP LEU ALA ASP LYS LYS VAL SEQRES 6 A 222 SER ALA GLU GLU PHE LYS GLU LEU ALA LYS ARG LYS ASN SEQRES 7 A 222 ASP ASN TYR VAL LYS MET ILE GLN ASP VAL SER PRO ALA SEQRES 8 A 222 ASP VAL TYR PRO GLY ILE LEU GLN LEU LEU LYS ASP LEU SEQRES 9 A 222 ARG SER ASN LYS ILE LYS ILE ALA LEU ALA SER ALA SER SEQRES 10 A 222 LYS ASN GLY PRO PHE LEU LEU GLU ARG MET ASN LEU THR SEQRES 11 A 222 GLY TYR PHE ASP ALA ILE ALA ASP PRO ALA GLU VAL ALA SEQRES 12 A 222 ALA SER LYS PRO ALA PRO ASP ILE PHE ILE ALA ALA ALA SEQRES 13 A 222 HIS ALA VAL GLY VAL ALA PRO SER GLU SER ILE GLY LEU SEQRES 14 A 222 GLU ASP SER GLN ALA GLY ILE GLN ALA ILE LYS ASP SER SEQRES 15 A 222 GLY ALA LEU PRO ILE GLY VAL GLY ARG PRO GLU ASP LEU SEQRES 16 A 222 GLY ASP ASP ILE VAL ILE VAL PRO ASP THR SER HIS TYR SEQRES 17 A 222 THR LEU GLU PHE LEU LYS GLU VAL TRP LEU GLN LYS GLN SEQRES 18 A 222 LYS HET ACE A 0 3 HET ALF A 301 5 HET BG6 A 302 16 HET NA A 303 1 HET MG A 304 1 HETNAM ACE ACETYL GROUP HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM BG6 6-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETSYN BG6 BETA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D- HETSYN 2 BG6 GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 BG6 GLUCOSE FORMUL 1 ACE C2 H4 O FORMUL 2 ALF AL F4 1- FORMUL 3 BG6 C6 H13 O9 P FORMUL 4 NA NA 1+ FORMUL 5 MG MG 2+ FORMUL 6 HOH *231(H2 O) HELIX 1 AA1 ASP A 15 ILE A 31 1 17 HELIX 2 AA2 ASP A 37 GLU A 42 1 6 HELIX 3 AA3 SER A 48 ALA A 60 1 13 HELIX 4 AA4 SER A 65 ILE A 84 1 20 HELIX 5 AA5 SER A 88 VAL A 92 5 5 HELIX 6 AA6 GLY A 95 ASN A 106 1 12 HELIX 7 AA7 ASN A 118 MET A 126 1 9 HELIX 8 AA8 LEU A 128 PHE A 132 5 5 HELIX 9 AA9 PRO A 148 VAL A 158 1 11 HELIX 10 AB1 ALA A 161 SER A 163 5 3 HELIX 11 AB2 SER A 171 GLY A 182 1 12 HELIX 12 AB3 ARG A 190 GLY A 195 1 6 HELIX 13 AB4 ASP A 203 TYR A 207 5 5 HELIX 14 AB5 THR A 208 GLN A 218 1 11 SHEET 1 AA1 6 ALA A 134 ILE A 135 0 SHEET 2 AA1 6 LYS A 109 LEU A 112 1 N LEU A 112 O ALA A 134 SHEET 3 AA1 6 ALA A 4 PHE A 7 1 N PHE A 7 O ALA A 111 SHEET 4 AA1 6 SER A 165 GLU A 169 1 O ILE A 166 N LEU A 6 SHEET 5 AA1 6 LEU A 184 VAL A 188 1 O LEU A 184 N GLY A 167 SHEET 6 AA1 6 VAL A 199 VAL A 201 1 O VAL A 199 N GLY A 187 LINK C ACE A 0 N MET A 1 1555 1555 1.33 LINK OD2 ASP A 8 MG MG A 304 1555 1555 2.02 LINK O ASN A 10 MG MG A 304 1555 1555 2.07 LINK O GLU A 124 NA NA A 303 1555 1555 2.28 LINK OD1 ASN A 127 NA NA A 303 1555 1555 2.44 LINK OD1 ASP A 170 MG MG A 304 1555 1555 2.07 LINK NA NA A 303 O HOH A 473 1555 1555 2.44 LINK NA NA A 303 O HOH A 491 1555 1555 2.12 LINK NA NA A 303 O HOH A 561 1555 1555 2.76 LINK NA NA A 303 O HOH A 577 1555 1555 2.33 LINK MG MG A 304 O HOH A 440 1555 1555 2.09 LINK MG MG A 304 O HOH A 451 1555 1555 2.10 CISPEP 1 LYS A 145 PRO A 146 0 9.55 CISPEP 2 LYS A 145 PRO A 146 0 10.26 CRYST1 37.520 54.280 104.420 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026652 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009577 0.00000 HETATM 1 C ACE A 0 -10.730 23.082 17.235 1.00 21.57 C ANISOU 1 C ACE A 0 3841 1732 2623 -121 382 -340 C HETATM 2 O ACE A 0 -11.038 22.011 17.629 1.00 25.19 O ANISOU 2 O ACE A 0 4345 1788 3437 -417 225 -229 O HETATM 3 CH3 ACE A 0 -10.764 24.222 18.185 1.00 21.25 C ANISOU 3 CH3 ACE A 0 4000 1572 2500 -631 510 -259 C