HEADER TRANSFERASE 26-OCT-18 6I0P TITLE STRUCTURE OF QUINOLINATE SYNTHASE IN COMPLEX WITH 6-MERCAPTOPYRIDINE- TITLE 2 2,3-DICARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOLINATE SYNTHASE A; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.72; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: NADA, TM_1644; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7 KEYWDS NAD BIOSYNTHESIS, IRON SULFUR CLUSTER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VOLBEDA,J.C.FONTECILLA-CAMPS REVDAT 3 24-JAN-24 6I0P 1 REMARK REVDAT 2 03-APR-19 6I0P 1 JRNL REVDAT 1 20-MAR-19 6I0P 0 JRNL AUTH J.SAEZ CABODEVILLA,A.VOLBEDA,O.HAMELIN,J.M.LATOUR,O.GIGAREL, JRNL AUTH 2 M.CLEMANCEY,C.DARNAULT,D.REICHMANN,P.AMARA, JRNL AUTH 3 J.C.FONTECILLA-CAMPS,S.OLLAGNIER DE CHOUDENS JRNL TITL DESIGN OF SPECIFIC INHIBITORS OF QUINOLINATE SYNTHASE BASED JRNL TITL 2 ON [4FE-4S] CLUSTER COORDINATION. JRNL REF CHEM.COMMUN.(CAMB.) V. 55 3725 2019 JRNL REFN ESSN 1364-548X JRNL PMID 30855610 JRNL DOI 10.1039/C8CC09023H REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1227 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1698 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2382 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.790 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2506 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2457 ; 0.011 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3397 ; 1.537 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5743 ; 1.510 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 5.816 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;34.259 ;23.509 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;13.025 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2702 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 449 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 81 REMARK 3 RESIDUE RANGE : A 255 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9200 -5.2610 24.1170 REMARK 3 T TENSOR REMARK 3 T11: 0.0119 T22: 0.1301 REMARK 3 T33: 0.0719 T12: 0.0030 REMARK 3 T13: 0.0098 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.1431 L22: 1.0220 REMARK 3 L33: 2.2466 L12: 0.0900 REMARK 3 L13: 0.3447 L23: -0.8852 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.2272 S13: 0.0318 REMARK 3 S21: -0.0508 S22: 0.1726 S23: 0.1663 REMARK 3 S31: 0.0394 S32: -0.3087 S33: -0.1495 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 168 REMARK 3 RESIDUE RANGE : A 280 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9050 7.6840 15.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.0565 T22: 0.1151 REMARK 3 T33: 0.0425 T12: -0.0431 REMARK 3 T13: 0.0109 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.8227 L22: 1.3477 REMARK 3 L33: 3.4682 L12: 0.6321 REMARK 3 L13: 1.1086 L23: 1.2947 REMARK 3 S TENSOR REMARK 3 S11: -0.1959 S12: 0.1395 S13: 0.0219 REMARK 3 S21: -0.1095 S22: 0.1143 S23: 0.0460 REMARK 3 S31: -0.3004 S32: 0.2627 S33: 0.0816 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3440 -0.0090 -1.2390 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.0771 REMARK 3 T33: 0.0311 T12: 0.0132 REMARK 3 T13: -0.0379 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.7387 L22: 0.9974 REMARK 3 L33: 1.9934 L12: -0.9206 REMARK 3 L13: 0.6406 L23: -0.3510 REMARK 3 S TENSOR REMARK 3 S11: 0.0895 S12: 0.2433 S13: -0.0622 REMARK 3 S21: -0.1812 S22: -0.0515 S23: 0.1509 REMARK 3 S31: 0.0705 S32: 0.1221 S33: -0.0380 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9130 -5.2310 12.0980 REMARK 3 T TENSOR REMARK 3 T11: 0.0330 T22: 0.0756 REMARK 3 T33: 0.0099 T12: 0.0180 REMARK 3 T13: 0.0075 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 26.7231 L22: 24.3261 REMARK 3 L33: 21.4896 L12: -3.9341 REMARK 3 L13: 1.6248 L23: -22.7773 REMARK 3 S TENSOR REMARK 3 S11: 0.2167 S12: 0.4784 S13: -0.0219 REMARK 3 S21: -0.1209 S22: -0.0964 S23: 0.1343 REMARK 3 S31: 0.0984 S32: 0.0593 S33: -0.1204 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0170 0.9390 11.8980 REMARK 3 T TENSOR REMARK 3 T11: 0.1054 T22: 0.1491 REMARK 3 T33: 0.1215 T12: 0.0328 REMARK 3 T13: 0.0242 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 16.8305 L22: 0.0094 REMARK 3 L33: 0.2688 L12: 0.3975 REMARK 3 L13: -2.1252 L23: -0.0501 REMARK 3 S TENSOR REMARK 3 S11: 0.1595 S12: -0.1878 S13: 0.3199 REMARK 3 S21: 0.0052 S22: -0.0583 S23: 0.0065 REMARK 3 S31: -0.0256 S32: 0.0293 S33: -0.1012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6I0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 1.13300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6F48 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG33500, DIOXANE, NA2HPO4, HEPES, REMARK 280 ANAEROBIC, PH 7.3, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.35000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 56.81 -140.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 81 SG REMARK 620 2 SF4 A 301 S1 107.2 REMARK 620 3 SF4 A 301 S2 108.4 100.2 REMARK 620 4 SF4 A 301 S3 131.9 103.5 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 168 SG REMARK 620 2 SF4 A 301 S2 114.4 REMARK 620 3 SF4 A 301 S3 116.5 107.4 REMARK 620 4 SF4 A 301 S4 112.1 102.8 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 254 SG REMARK 620 2 SF4 A 301 S1 122.0 REMARK 620 3 SF4 A 301 S3 118.7 100.4 REMARK 620 4 SF4 A 301 S4 108.8 105.0 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 QAS A 302 S REMARK 620 2 SF4 A 301 S1 95.1 REMARK 620 3 SF4 A 301 S2 114.7 104.6 REMARK 620 4 SF4 A 301 S4 128.5 106.3 104.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QAS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6I0K RELATED DB: PDB REMARK 900 COMPLEX WITH 4-MERCAPTOPHTHALIC ACID DBREF 6I0P A 1 298 UNP Q9X1X7 NADA_THEMA 1 298 SEQADV 6I0P MET A -6 UNP Q9X1X7 INITIATING METHIONINE SEQADV 6I0P HIS A -5 UNP Q9X1X7 EXPRESSION TAG SEQADV 6I0P HIS A -4 UNP Q9X1X7 EXPRESSION TAG SEQADV 6I0P HIS A -3 UNP Q9X1X7 EXPRESSION TAG SEQADV 6I0P HIS A -2 UNP Q9X1X7 EXPRESSION TAG SEQADV 6I0P HIS A -1 UNP Q9X1X7 EXPRESSION TAG SEQADV 6I0P HIS A 0 UNP Q9X1X7 EXPRESSION TAG SEQADV 6I0P PHE A 21 UNP Q9X1X7 TYR 21 ENGINEERED MUTATION SEQADV 6I0P ARG A 219 UNP Q9X1X7 LYS 219 ENGINEERED MUTATION SEQRES 1 A 305 MET HIS HIS HIS HIS HIS HIS MET VAL ASP GLU ILE LEU SEQRES 2 A 305 LYS LEU LYS LYS GLU LYS GLY TYR ILE ILE LEU ALA HIS SEQRES 3 A 305 ASN PHE GLN ILE PRO GLU LEU GLN ASP ILE ALA ASP PHE SEQRES 4 A 305 VAL GLY ASP SER LEU GLN LEU ALA ARG LYS ALA MET GLU SEQRES 5 A 305 LEU SER GLU LYS LYS ILE LEU PHE LEU GLY VAL ASP PHE SEQRES 6 A 305 MET ALA GLU LEU VAL LYS ILE LEU ASN PRO ASP LYS LYS SEQRES 7 A 305 VAL ILE VAL PRO ASP ARG SER ALA THR CYS PRO MET ALA SEQRES 8 A 305 ASN ARG LEU THR PRO GLU ILE ILE ARG GLU TYR ARG GLU SEQRES 9 A 305 LYS PHE PRO ASP ALA PRO VAL VAL LEU TYR VAL ASN SER SEQRES 10 A 305 THR SER GLU CYS LYS THR LEU ALA ASP VAL ILE CYS THR SEQRES 11 A 305 SER ALA ASN ALA VAL GLU VAL VAL LYS LYS LEU ASP SER SEQRES 12 A 305 SER VAL VAL ILE PHE GLY PRO ASP ARG ASN LEU GLY GLU SEQRES 13 A 305 TYR VAL ALA GLU LYS THR GLY LYS LYS VAL ILE THR ILE SEQRES 14 A 305 PRO GLU ASN GLY HIS CYS PRO VAL HIS GLN PHE ASN ALA SEQRES 15 A 305 GLU SER ILE ASP ALA VAL ARG LYS LYS TYR PRO ASP ALA SEQRES 16 A 305 LYS VAL ILE VAL HIS PRO GLU CYS PRO LYS PRO VAL ARG SEQRES 17 A 305 ASP LYS ALA ASP TYR VAL GLY SER THR GLY GLN MET GLU SEQRES 18 A 305 LYS ILE PRO GLU ARG ASP PRO SER ARG ILE PHE VAL ILE SEQRES 19 A 305 GLY THR GLU ILE GLY MET ILE HIS LYS LEU LYS LYS LYS SEQRES 20 A 305 PHE PRO ASP ARG GLU PHE VAL PRO LEU GLU MET ALA VAL SEQRES 21 A 305 CYS VAL ASN MET LYS LYS ASN THR LEU GLU ASN THR LEU SEQRES 22 A 305 HIS ALA LEU GLN THR GLU SER PHE GLU VAL ILE LEU PRO SEQRES 23 A 305 LYS GLU VAL ILE GLU LYS ALA LYS LYS PRO ILE LEU ARG SEQRES 24 A 305 MET PHE GLU LEU MET GLY HET SF4 A 301 8 HET QAS A 302 13 HET CL A 303 1 HET PO4 A 304 5 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM QAS 6-MERCAPTOPYRIDINE-2,3-DICARBOXYLIC ACID HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION FORMUL 2 SF4 FE4 S4 FORMUL 3 QAS C7 H5 N O4 S FORMUL 4 CL CL 1- FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *310(H2 O) HELIX 1 AA1 HIS A -2 GLY A 13 1 16 HELIX 2 AA2 ILE A 23 ALA A 30 1 8 HELIX 3 AA3 ASP A 35 GLU A 45 1 11 HELIX 4 AA4 VAL A 56 ASN A 67 1 12 HELIX 5 AA5 CYS A 81 ARG A 86 1 6 HELIX 6 AA6 THR A 88 PHE A 99 1 12 HELIX 7 AA7 THR A 111 THR A 116 1 6 HELIX 8 AA8 ASN A 126 LEU A 134 1 9 HELIX 9 AA9 ASP A 144 GLY A 156 1 13 HELIX 10 AB1 CYS A 168 GLN A 172 5 5 HELIX 11 AB2 ASN A 174 TYR A 185 1 12 HELIX 12 AB3 PRO A 197 LYS A 203 1 7 HELIX 13 AB4 SER A 209 GLU A 214 1 6 HELIX 14 AB5 LYS A 215 ARG A 219 5 5 HELIX 15 AB6 ILE A 231 PHE A 241 1 11 HELIX 16 AB7 ASN A 256 ASN A 260 5 5 HELIX 17 AB8 THR A 261 GLU A 272 1 12 HELIX 18 AB9 PRO A 279 MET A 297 1 19 SHEET 1 AA1 4 PHE A 32 GLY A 34 0 SHEET 2 AA1 4 TYR A 14 HIS A 19 1 N ALA A 18 O PHE A 32 SHEET 3 AA1 4 LYS A 50 LEU A 54 1 O LEU A 54 N LEU A 17 SHEET 4 AA1 4 LYS A 71 ILE A 73 1 O LYS A 71 N ILE A 51 SHEET 1 AA2 4 VAL A 120 CYS A 122 0 SHEET 2 AA2 4 VAL A 104 TYR A 107 1 N LEU A 106 O VAL A 120 SHEET 3 AA2 4 VAL A 138 GLY A 142 1 O ILE A 140 N VAL A 105 SHEET 4 AA2 4 LYS A 158 THR A 161 1 O ILE A 160 N VAL A 139 SHEET 1 AA3 4 TYR A 206 VAL A 207 0 SHEET 2 AA3 4 LYS A 189 VAL A 192 1 N VAL A 192 O TYR A 206 SHEET 3 AA3 4 ILE A 224 GLY A 228 1 O GLY A 228 N ILE A 191 SHEET 4 AA3 4 GLU A 245 PRO A 248 1 O GLU A 245 N PHE A 225 LINK SG CYS A 81 FE4 SF4 A 301 1555 1555 2.25 LINK SG CYS A 168 FE1 SF4 A 301 1555 1555 2.29 LINK SG CYS A 254 FE2 SF4 A 301 1555 1555 2.29 LINK FE3 SF4 A 301 S QAS A 302 1555 1555 2.32 CISPEP 1 GLY A 142 PRO A 143 0 1.34 CISPEP 2 ILE A 162 PRO A 163 0 -5.54 CISPEP 3 SER A 273 PHE A 274 0 0.31 SITE 1 AC1 6 CYS A 81 MET A 83 ASN A 109 CYS A 168 SITE 2 AC1 6 CYS A 254 QAS A 302 SITE 1 AC2 15 HIS A 19 PHE A 21 ASP A 35 SER A 36 SITE 2 AC2 15 MET A 59 ASN A 109 SER A 124 HIS A 193 SITE 3 AC2 15 SER A 209 THR A 210 SF4 A 301 HOH A 412 SITE 4 AC2 15 HOH A 470 HOH A 495 HOH A 501 SITE 1 AC3 2 ASN A 67 ASP A 69 SITE 1 AC4 3 GLN A 38 LYS A 215 HOH A 557 CRYST1 55.500 48.700 60.600 90.00 107.00 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018018 0.000000 0.005509 0.00000 SCALE2 0.000000 0.020534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017256 0.00000