HEADER PEPTIDE BINDING PROTEIN 28-OCT-18 6I1F TITLE CRYSTAL STRUCTURE OF TP DOMAIN FROM CHLAMYDIA TRACHOMATIS PENICILLIN- TITLE 2 BINDING PROTEIN 3 IN COMPLEX WITH AMOXICILLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN,PENICILLIN-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.1.129,2.4.1.129; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDIA TRACHOMATIS; SOURCE 3 ORGANISM_TAXID: 813; SOURCE 4 GENE: PBP_2, ERS133248_00492; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PENICILLIN-BINDING PROTEIN, PEPTIDOGLYCAN, TRANSPEPTIDASE, PEPTIDE KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.BELLINI,L.KOEKEMOER,H.NEWMAN,C.G.DOWSON REVDAT 2 24-JAN-24 6I1F 1 REMARK REVDAT 1 20-NOV-19 6I1F 0 JRNL AUTH D.BELLINI,L.KOEKEMOER,H.NEWMAN,C.G.DOWSON JRNL TITL CRYSTAL STRUCTURE OF TP DOMAIN FROM CHLAMYDIA TRACHOMATIS JRNL TITL 2 PENICILLIN-BINDING PROTEIN 3 IN COMPLEX WITH AMOXICILLIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 68.0 REMARK 3 NUMBER OF REFLECTIONS : 40223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2136 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 104 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 4 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 0.63000 REMARK 3 B12 (A**2) : -0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.514 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5244 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7163 ; 1.311 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 685 ; 5.959 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;36.700 ;24.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 812 ;14.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;21.812 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 840 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3959 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012586. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42354 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 91.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 6HZH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M SODIUM CITRATE AND 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.03600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.51800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.51800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.03600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 256 REMARK 465 PRO A 257 REMARK 465 GLY A 258 REMARK 465 GLY B 256 REMARK 465 PRO B 257 REMARK 465 GLY B 258 REMARK 465 TYR B 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 853 O HOH B 854 0.35 REMARK 500 OG SER A 320 C1 AXL A 701 1.63 REMARK 500 OG SER B 320 C1 AXL B 701 1.64 REMARK 500 OD1 ASP B 537 O GLU B 562 2.15 REMARK 500 OG1 THR B 502 O HOH B 801 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 853 O HOH B 853 5554 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 465 -160.04 -65.17 REMARK 500 ASP A 469 19.79 58.04 REMARK 500 VAL A 478 -83.14 54.58 REMARK 500 MET A 479 149.32 -33.94 REMARK 500 GLU A 481 106.38 83.52 REMARK 500 ASN A 550 71.28 -164.70 REMARK 500 LEU B 535 78.78 -64.75 REMARK 500 ASN B 550 75.95 -156.26 REMARK 500 GLU B 562 -75.88 -73.55 REMARK 500 ASN B 563 71.64 -112.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AXL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AXL B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HZH RELATED DB: PDB REMARK 900 RELATED ID: 6HZI RELATED DB: PDB REMARK 900 RELATED ID: 6HZJ RELATED DB: PDB REMARK 900 RELATED ID: 6HZO RELATED DB: PDB REMARK 900 RELATED ID: 6HZQ RELATED DB: PDB REMARK 900 RELATED ID: 6HZR RELATED DB: PDB DBREF1 6I1F A 263 305 UNP A0A0E9FXJ8_CHLTH DBREF2 6I1F A A0A0E9FXJ8 268 310 DBREF1 6I1F A 308 601 UNP A0A0E9FXJ8_CHLTH DBREF2 6I1F A A0A0E9FXJ8 329 622 DBREF1 6I1F B 263 305 UNP A0A0E9FXJ8_CHLTH DBREF2 6I1F B A0A0E9FXJ8 268 310 DBREF1 6I1F B 308 601 UNP A0A0E9FXJ8_CHLTH DBREF2 6I1F B A0A0E9FXJ8 329 622 SEQADV 6I1F GLY A 256 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F PRO A 257 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F GLY A 258 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F TYR A 259 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F GLN A 260 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F ASP A 261 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F PRO A 262 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F PRO A 306 UNP A0A0E9FXJ LINKER SEQADV 6I1F GLY A 307 UNP A0A0E9FXJ LINKER SEQADV 6I1F GLY B 256 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F PRO B 257 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F GLY B 258 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F TYR B 259 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F GLN B 260 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F ASP B 261 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F PRO B 262 UNP A0A0E9FXJ EXPRESSION TAG SEQADV 6I1F PRO B 306 UNP A0A0E9FXJ LINKER SEQADV 6I1F GLY B 307 UNP A0A0E9FXJ LINKER SEQRES 1 A 346 GLY PRO GLY TYR GLN ASP PRO LEU THR ILE ASN ALA ASP SEQRES 2 A 346 LEU GLN ARG VAL ALA GLU GLU SER LEU ASN ALA ALA VAL SEQRES 3 A 346 LYS ARG VAL GLY GLY VAL TRP GLY SER ALA ALA VAL LEU SEQRES 4 A 346 GLU ILE GLY THR GLY ARG LEU LEU ALA LEU ALA PRO GLY SEQRES 5 A 346 GLY THR ARG SER VAL SER ALA ILE TYR GLU PRO GLY SER SEQRES 6 A 346 VAL GLY LYS LEU VAL THR LEU ALA ALA ALA ILE ASP GLN SEQRES 7 A 346 LYS LYS VAL THR PRO THR SER THR PHE THR VAL SER SER SEQRES 8 A 346 THR ARG ASP MET PRO ASN GLY GLU ARG ILE SER ASP ASP SEQRES 9 A 346 SER PRO HIS GLU THR GLN ASP MET THR VAL ALA GLY ILE SEQRES 10 A 346 ILE ALA HIS SER TYR ASN THR GLY THR VAL GLN ILE GLY SEQRES 11 A 346 ASP THR VAL SER ASP SER VAL ARG TYR GLU TYR MET GLN SEQRES 12 A 346 LYS PHE GLY TRP GLY ALA LYS THR GLY ILE THR LEU PRO SEQRES 13 A 346 SER GLU GLU SER GLY ILE LEU ARG PRO HIS THR GLU TRP SEQRES 14 A 346 GLY ASP ARG ASP HIS TYR THR THR MET PHE GLY GLN GLY SEQRES 15 A 346 VAL ALA VAL THR THR ILE GLN LEU ALA GLN MET VAL ALA SEQRES 16 A 346 VAL PHE GLY GLN LYS GLY VAL LEU ILE PRO PRO ARG ILE SEQRES 17 A 346 ILE ASP GLY TYR ASP ASP GLU ASN GLY VAL TYR THR PRO SEQRES 18 A 346 THR VAL MET GLY GLU SER ARG GLN VAL VAL SER GLU ASP SEQRES 19 A 346 THR ALA GLN THR VAL LEU ASN ILE MET GLN GLY ALA THR SEQRES 20 A 346 GLN PRO GLY GLY THR ALA GLU GLY ILE GLY ALA VAL LYS SEQRES 21 A 346 GLY TYR ASN VAL ALA ALA LYS THR GLY THR ALA GLU ASN SEQRES 22 A 346 VAL GLY SER SER GLY SER LEU THR ASP THR ALA ALA THR SEQRES 23 A 346 PHE THR ALA LEU ILE PRO ALA GLU ASN PRO LYS ILE ALA SEQRES 24 A 346 VAL ALA VAL VAL ILE TYR LYS GLU ASN GLY THR VAL TYR SEQRES 25 A 346 GLY SER THR ALA SER ALA PRO VAL PHE VAL ASP ILE ALA SEQRES 26 A 346 GLN PHE ALA MET ARG GLU MET LYS ILE PRO PRO SER THR SEQRES 27 A 346 VAL PRO LEU TYR LYS TYR PRO TRP SEQRES 1 B 346 GLY PRO GLY TYR GLN ASP PRO LEU THR ILE ASN ALA ASP SEQRES 2 B 346 LEU GLN ARG VAL ALA GLU GLU SER LEU ASN ALA ALA VAL SEQRES 3 B 346 LYS ARG VAL GLY GLY VAL TRP GLY SER ALA ALA VAL LEU SEQRES 4 B 346 GLU ILE GLY THR GLY ARG LEU LEU ALA LEU ALA PRO GLY SEQRES 5 B 346 GLY THR ARG SER VAL SER ALA ILE TYR GLU PRO GLY SER SEQRES 6 B 346 VAL GLY LYS LEU VAL THR LEU ALA ALA ALA ILE ASP GLN SEQRES 7 B 346 LYS LYS VAL THR PRO THR SER THR PHE THR VAL SER SER SEQRES 8 B 346 THR ARG ASP MET PRO ASN GLY GLU ARG ILE SER ASP ASP SEQRES 9 B 346 SER PRO HIS GLU THR GLN ASP MET THR VAL ALA GLY ILE SEQRES 10 B 346 ILE ALA HIS SER TYR ASN THR GLY THR VAL GLN ILE GLY SEQRES 11 B 346 ASP THR VAL SER ASP SER VAL ARG TYR GLU TYR MET GLN SEQRES 12 B 346 LYS PHE GLY TRP GLY ALA LYS THR GLY ILE THR LEU PRO SEQRES 13 B 346 SER GLU GLU SER GLY ILE LEU ARG PRO HIS THR GLU TRP SEQRES 14 B 346 GLY ASP ARG ASP HIS TYR THR THR MET PHE GLY GLN GLY SEQRES 15 B 346 VAL ALA VAL THR THR ILE GLN LEU ALA GLN MET VAL ALA SEQRES 16 B 346 VAL PHE GLY GLN LYS GLY VAL LEU ILE PRO PRO ARG ILE SEQRES 17 B 346 ILE ASP GLY TYR ASP ASP GLU ASN GLY VAL TYR THR PRO SEQRES 18 B 346 THR VAL MET GLY GLU SER ARG GLN VAL VAL SER GLU ASP SEQRES 19 B 346 THR ALA GLN THR VAL LEU ASN ILE MET GLN GLY ALA THR SEQRES 20 B 346 GLN PRO GLY GLY THR ALA GLU GLY ILE GLY ALA VAL LYS SEQRES 21 B 346 GLY TYR ASN VAL ALA ALA LYS THR GLY THR ALA GLU ASN SEQRES 22 B 346 VAL GLY SER SER GLY SER LEU THR ASP THR ALA ALA THR SEQRES 23 B 346 PHE THR ALA LEU ILE PRO ALA GLU ASN PRO LYS ILE ALA SEQRES 24 B 346 VAL ALA VAL VAL ILE TYR LYS GLU ASN GLY THR VAL TYR SEQRES 25 B 346 GLY SER THR ALA SER ALA PRO VAL PHE VAL ASP ILE ALA SEQRES 26 B 346 GLN PHE ALA MET ARG GLU MET LYS ILE PRO PRO SER THR SEQRES 27 B 346 VAL PRO LEU TYR LYS TYR PRO TRP HET AXL A 701 25 HET AXL B 701 25 HETNAM AXL 2-{1-[2-AMINO-2-(4-HYDROXY-PHENYL)-ACETYLAMINO]-2-OXO- HETNAM 2 AXL ETHYL}-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID HETSYN AXL AMOXICILLIN, BOUND FORM FORMUL 3 AXL 2(C16 H21 N3 O5 S) FORMUL 5 HOH *124(H2 O) HELIX 1 AA1 ASN A 266 VAL A 284 1 19 HELIX 2 AA2 THR A 309 ALA A 314 1 6 HELIX 3 AA3 PRO A 318 VAL A 321 5 4 HELIX 4 AA4 GLY A 322 GLN A 333 1 12 HELIX 5 AA5 VAL A 369 SER A 376 1 8 HELIX 6 AA6 TYR A 377 ASP A 386 1 10 HELIX 7 AA7 SER A 389 PHE A 400 1 12 HELIX 8 AA8 PRO A 420 TRP A 424 5 5 HELIX 9 AA9 GLY A 425 THR A 432 1 8 HELIX 10 AB1 MET A 433 GLY A 435 5 3 HELIX 11 AB2 THR A 441 VAL A 451 1 11 HELIX 12 AB3 PHE A 452 GLN A 454 5 3 HELIX 13 AB4 SER A 487 GLN A 499 1 13 HELIX 14 AB5 TYR A 567 SER A 572 1 6 HELIX 15 AB6 SER A 572 MET A 587 1 16 HELIX 16 AB7 ASN B 266 VAL B 284 1 19 HELIX 17 AB8 THR B 309 ALA B 314 1 6 HELIX 18 AB9 PRO B 318 VAL B 321 5 4 HELIX 19 AC1 GLY B 322 GLN B 333 1 12 HELIX 20 AC2 VAL B 369 SER B 376 1 8 HELIX 21 AC3 TYR B 377 ASP B 386 1 10 HELIX 22 AC4 SER B 389 PHE B 400 1 12 HELIX 23 AC5 PRO B 420 TRP B 424 5 5 HELIX 24 AC6 GLY B 425 THR B 432 1 8 HELIX 25 AC7 MET B 433 GLY B 435 5 3 HELIX 26 AC8 THR B 441 VAL B 451 1 11 HELIX 27 AC9 PHE B 452 GLN B 454 5 3 HELIX 28 AD1 SER B 487 GLN B 499 1 13 HELIX 29 AD2 TYR B 567 SER B 572 1 6 HELIX 30 AD3 SER B 572 MET B 587 1 16 SHEET 1 AA1 5 LEU A 301 ALA A 305 0 SHEET 2 AA1 5 TRP A 288 GLU A 295 -1 N ALA A 291 O ALA A 305 SHEET 3 AA1 5 ILE A 553 LYS A 561 -1 O TYR A 560 N TRP A 288 SHEET 4 AA1 5 ASP A 537 ILE A 546 -1 N ALA A 540 O ILE A 559 SHEET 5 AA1 5 ALA A 520 ASN A 528 -1 N ALA A 520 O LEU A 545 SHEET 1 AA2 2 THR A 341 VAL A 344 0 SHEET 2 AA2 2 GLN A 365 THR A 368 -1 O GLN A 365 N VAL A 344 SHEET 1 AA3 2 THR A 347 ASP A 349 0 SHEET 2 AA3 2 ARG A 355 SER A 357 -1 O ILE A 356 N ARG A 348 SHEET 1 AA4 2 VAL A 457 LEU A 458 0 SHEET 2 AA4 2 ARG A 483 GLN A 484 -1 O ARG A 483 N LEU A 458 SHEET 1 AA5 5 LEU B 301 ALA B 305 0 SHEET 2 AA5 5 TRP B 288 GLU B 295 -1 N ALA B 291 O ALA B 305 SHEET 3 AA5 5 ILE B 553 LYS B 561 -1 O TYR B 560 N TRP B 288 SHEET 4 AA5 5 ASP B 537 ILE B 546 -1 N ALA B 540 O ILE B 559 SHEET 5 AA5 5 ALA B 520 ASN B 528 -1 N ALA B 520 O LEU B 545 SHEET 1 AA6 2 THR B 341 VAL B 344 0 SHEET 2 AA6 2 GLN B 365 THR B 368 -1 O GLN B 365 N VAL B 344 SHEET 1 AA7 2 THR B 347 ASP B 349 0 SHEET 2 AA7 2 ARG B 355 SER B 357 -1 O ILE B 356 N ARG B 348 SHEET 1 AA8 2 VAL B 457 LEU B 458 0 SHEET 2 AA8 2 ARG B 483 GLN B 484 -1 O ARG B 483 N LEU B 458 SHEET 1 AA9 2 GLY B 466 ASP B 468 0 SHEET 2 AA9 2 TYR B 474 PRO B 476 -1 O THR B 475 N TYR B 467 CISPEP 1 ALA A 305 PRO A 306 0 -1.37 CISPEP 2 ILE A 546 PRO A 547 0 -7.95 CISPEP 3 ALA B 305 PRO B 306 0 8.81 CISPEP 4 ILE B 546 PRO B 547 0 -5.94 SITE 1 AC1 12 SER A 320 ASP A 359 SER A 376 ASN A 378 SITE 2 AC1 12 GLN A 436 THR A 523 GLY A 524 THR A 525 SITE 3 AC1 12 GLU A 527 TYR A 567 HOH A 814 HOH A 829 SITE 1 AC2 11 SER B 320 ASP B 359 SER B 376 ASN B 378 SITE 2 AC2 11 THR B 523 GLY B 524 THR B 525 GLU B 527 SITE 3 AC2 11 TYR B 567 HOH B 826 HOH B 838 CRYST1 106.226 106.226 118.554 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009414 0.005435 0.000000 0.00000 SCALE2 0.000000 0.010870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008435 0.00000