HEADER OXIDOREDUCTASE 30-OCT-18 6I1Q TITLE IODIDE STRUCTURE OF TRICHODERMA REESEI CARBOHYDRATE-ACTIVE ENZYMES TITLE 2 FAMILY AA12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE QUINO PROTEIN GLUCOSE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA JECORINA (STRAIN ATCC 56765 / BCRC SOURCE 3 32924 / NRRL 11460 / RUT C-30); SOURCE 4 ORGANISM_COMMON: TRICHODERMA REESEI; SOURCE 5 ORGANISM_TAXID: 1344414; SOURCE 6 STRAIN: ATCC 56765 / BCRC 32924 / NRRL 11460 / RUT C-30; SOURCE 7 GENE: M419DRAFT_36756; SOURCE 8 EXPRESSION_SYSTEM: ASPERGILLUS NIGER; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 5061 KEYWDS DEHYDROGENASE, CARBOHYDRATE-ACTIVE ENZYMES, PQQ, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TURBE-DOAN,E.RECORD,V.LOMBARD,R.KUMAR,B.HENRISSAT,A.LEVASSEUR, AUTHOR 2 M.L.GARRON REVDAT 2 29-JUL-20 6I1Q 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 13-NOV-19 6I1Q 0 JRNL AUTH A.TURBE-DOAN,E.RECORD,V.LOMBARD,R.KUMAR,A.LEVASSEUR, JRNL AUTH 2 B.HENRISSAT,M.L.GARRON JRNL TITL THE FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OFTRICHODERMA JRNL TITL 2 REESEIDEHYDROGENASE BELONGING TO THE PQQ DEPENDENT FAMILY OF JRNL TITL 3 CARBOHYDRATE-ACTIVE ENZYMES FAMILY AA12. JRNL REF APPL.ENVIRON.MICROBIOL. 2019 JRNL REFN ESSN 1098-5336 JRNL PMID 31604773 JRNL DOI 10.1128/AEM.00964-19 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1701 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2190 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.433 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3180 ; 0.013 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2687 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4368 ; 1.808 ; 1.714 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6301 ; 1.076 ; 1.690 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 7.090 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;35.266 ;23.397 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;11.770 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.155 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3621 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 578 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6I1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8-5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.653120 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 764115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.07 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 55-60% PEG550 MME, 0.1M HEPES. REMARK 280 CRYSTALS WERE BRIEVELY SOAKED IN 1M KI SOLUTION, PH 8.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.37500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.39000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.56250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.39000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.18750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.39000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.56250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.39000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.18750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.37500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 THR A 203 REMARK 465 ASP A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 341 C1 NAG A 508 1.03 REMARK 500 ND2 ASN A 341 O5 NAG A 508 1.95 REMARK 500 ND2 ASN A 306 O5 NAG D 1 1.96 REMARK 500 ND2 ASN A 184 O5 NAG C 1 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 55 73.50 -168.02 REMARK 500 ARG A 57 -111.67 -117.10 REMARK 500 VAL A 74 -59.38 -126.82 REMARK 500 ASP A 100 109.19 -166.14 REMARK 500 HIS A 105 -60.52 -176.36 REMARK 500 ASN A 147 37.57 73.45 REMARK 500 ASP A 152 -82.20 83.62 REMARK 500 ASP A 221 77.91 -161.51 REMARK 500 ASN A 231 -3.19 -143.43 REMARK 500 ASP A 243 36.18 75.08 REMARK 500 GLN A 328 130.15 -39.87 REMARK 500 SER A 332 67.97 65.44 REMARK 500 VAL A 404 -76.34 -121.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 508 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 510 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 259 OE1 REMARK 620 2 GLU A 259 OE2 50.4 REMARK 620 3 TYR A 276 O 139.0 168.9 REMARK 620 4 HOH A 641 O 122.1 86.0 90.4 REMARK 620 5 HOH A 658 O 80.7 106.9 82.6 78.3 REMARK 620 6 HOH A 662 O 71.4 102.7 79.0 166.1 108.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6H7T RELATED DB: PDB REMARK 900 NATIVE STRUCTURE DBREF1 6I1Q A 28 430 UNP A0A024S820_HYPJR DBREF2 6I1Q A A0A024S820 28 430 SEQRES 1 A 403 THR ASN ASN LEU GLN VAL THR TYR PRO ALA PRO VAL ALA SEQRES 2 A 403 ALA ASP GLY TRP GLU TYR ARG LEU ILE SER THR GLY LEU SEQRES 3 A 403 THR ALA PRO ARG SER ILE VAL PHE ASP SER THR GLY GLY SEQRES 4 A 403 LEU LEU VAL LEU ASP ALA GLY VAL GLY VAL ARG ARG LEU SEQRES 5 A 403 THR LEU GLN ASP ASN GLY GLY THR CYS LEU SER VAL THR SEQRES 6 A 403 ALA ASN ALA THR LEU ILE ALA ASP THR ALA LEU ASN HIS SEQRES 7 A 403 GLY LEU ALA ILE SER ALA ASP GLY GLY THR ILE TYR ALA SEQRES 8 A 403 SER THR VAL ASN ASP VAL TYR ALA TYR THR TYR ASN GLU SEQRES 9 A 403 GLN THR ASN THR VAL ASP PRO THR THR ARG ARG THR VAL SEQRES 10 A 403 VAL THR ASN MET THR ASN THR ASP HIS VAL THR ARG THR SEQRES 11 A 403 LEU LEU LEU SER SER ARG LEU PRO ASN GLU LEU LEU VAL SEQRES 12 A 403 SER ARG GLY SER ALA ALA ASN GLU ASP PRO GLN ALA ARG SEQRES 13 A 403 ASN VAL THR SER GLY HIS SER GLN ILE ARG ALA TYR ASP SEQRES 14 A 403 ILE SER THR LEU ALA ALA THR ASP PRO PRO PHE ASP PHE SEQRES 15 A 403 VAL ALA GLY THR LEU ILE GLY TRP GLY LEU ARG ASP SER SEQRES 16 A 403 VAL GLY VAL GLY GLU ASN PRO THR ASN GLY GLY ILE TRP SEQRES 17 A 403 SER VAL GLU ASN SER VAL ASP ASP LEU THR ARG GLU GLY SEQRES 18 A 403 VAL ASP VAL HIS GLN ASP ASN PRO GLY GLU GLU LEU ASN SEQRES 19 A 403 PHE HIS GLY ILE LEU GLY ASN THR ALA ASN GLN GLY GLY SEQRES 20 A 403 ASN TYR GLY TYR PRO ASP CYS TYR ALA LEU TRP SER THR SEQRES 21 A 403 ALA GLY PHE PRO ASP LEU GLY ALA LEU GLU VAL GLY ASP SEQRES 22 A 403 GLN PHE ALA SER ASP ASN ALA THR ALA GLY VAL THR ASP SEQRES 23 A 403 ALA THR CYS ASN THR ASN PHE VAL ASP PRO ARG LEU VAL SEQRES 24 A 403 PHE GLN ALA HIS VAL SER PRO LEU ASP ILE LYS PHE ASN SEQRES 25 A 403 THR ASN GLY THR THR ALA TYR ILE THR PHE HIS GLY SER SEQRES 26 A 403 THR ASP ARG THR THR PRO VAL GLY TYR SER ILE VAL SER SEQRES 27 A 403 VAL ALA PHE GLY LEU ASN GLY GLN PRO THR SER PRO MET SEQRES 28 A 403 ASP SER THR THR ALA ALA ASN ASN ILE LEU THR SER PRO SEQRES 29 A 403 ASP LEU THR GLN CYS PRO ASP ASP CYS PHE THR PRO VAL SEQRES 30 A 403 GLY LEU THR PHE ASP THR ILE GLY ARG LEU PHE PHE SER SEQRES 31 A 403 SER ASP SER THR GLY GLU ILE PHE VAL LEU GLN GLN SER HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG A 503 14 HET NAG A 508 14 HET PGE A 509 10 HET CA A 510 1 HET IOD A 511 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PGE TRIETHYLENE GLYCOL HETNAM CA CALCIUM ION HETNAM IOD IODIDE ION FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 7 PGE C6 H14 O4 FORMUL 8 CA CA 2+ FORMUL 9 IOD I 1- FORMUL 10 HOH *134(H2 O) HELIX 1 AA1 PRO A 138 ARG A 141 5 4 HELIX 2 AA2 ASP A 179 GLY A 188 5 10 HELIX 3 AA3 SER A 198 LEU A 200 5 3 HELIX 4 AA4 VAL A 210 GLY A 212 5 3 HELIX 5 AA5 THR A 312 PHE A 320 1 9 HELIX 6 AA6 ASP A 392 CYS A 396 5 5 SHEET 1 AA1 5 VAL A 39 ALA A 40 0 SHEET 2 AA1 5 ASN A 385 THR A 389 -1 O THR A 389 N VAL A 39 SHEET 3 AA1 5 SER A 362 ALA A 367 -1 N SER A 365 O ASN A 385 SHEET 4 AA1 5 THR A 344 PHE A 349 -1 N PHE A 349 O SER A 362 SHEET 5 AA1 5 LYS A 337 PHE A 338 -1 N LYS A 337 O TYR A 346 SHEET 1 AA2 4 TRP A 44 SER A 50 0 SHEET 2 AA2 4 GLU A 423 GLN A 429 -1 O ILE A 424 N ILE A 49 SHEET 3 AA2 4 LEU A 414 SER A 418 -1 N PHE A 416 O PHE A 425 SHEET 4 AA2 4 PRO A 403 PHE A 408 -1 N THR A 407 O PHE A 415 SHEET 1 AA3 4 PRO A 56 PHE A 61 0 SHEET 2 AA3 4 LEU A 67 ASP A 71 -1 O LEU A 68 N VAL A 60 SHEET 3 AA3 4 GLY A 75 ASP A 83 -1 O ARG A 77 N VAL A 69 SHEET 4 AA3 4 LEU A 89 ALA A 99 -1 O ALA A 95 N ARG A 78 SHEET 1 AA4 4 LEU A 107 ILE A 109 0 SHEET 2 AA4 4 THR A 115 SER A 119 -1 O TYR A 117 N ALA A 108 SHEET 3 AA4 4 VAL A 124 ASN A 130 -1 O TYR A 125 N ALA A 118 SHEET 4 AA4 4 THR A 135 VAL A 136 -1 O THR A 135 N ASN A 130 SHEET 1 AA5 5 LEU A 107 ILE A 109 0 SHEET 2 AA5 5 THR A 115 SER A 119 -1 O TYR A 117 N ALA A 108 SHEET 3 AA5 5 VAL A 124 ASN A 130 -1 O TYR A 125 N ALA A 118 SHEET 4 AA5 5 ARG A 142 THR A 146 -1 O VAL A 145 N VAL A 124 SHEET 5 AA5 5 PHE A 207 ASP A 208 1 O PHE A 207 N VAL A 144 SHEET 1 AA6 4 LEU A 158 LEU A 160 0 SHEET 2 AA6 4 GLU A 167 ARG A 172 -1 O LEU A 169 N LEU A 159 SHEET 3 AA6 4 GLN A 191 ASP A 196 -1 O TYR A 195 N LEU A 168 SHEET 4 AA6 4 THR A 213 TRP A 217 -1 O THR A 213 N ALA A 194 SHEET 1 AA7 4 GLY A 224 GLU A 227 0 SHEET 2 AA7 4 GLY A 233 GLU A 238 -1 O TRP A 235 N GLY A 226 SHEET 3 AA7 4 GLU A 258 ILE A 265 -1 O GLY A 264 N ILE A 234 SHEET 4 AA7 4 LEU A 325 PHE A 327 -1 O LEU A 325 N LEU A 260 SHEET 1 AA8 2 THR A 245 ARG A 246 0 SHEET 2 AA8 2 VAL A 249 ASP A 250 -1 O VAL A 249 N ARG A 246 SHEET 1 AA9 2 CYS A 281 ALA A 283 0 SHEET 2 AA9 2 GLN A 301 ALA A 303 -1 O PHE A 302 N TYR A 282 SSBOND 1 CYS A 281 CYS A 316 1555 1555 2.04 SSBOND 2 CYS A 396 CYS A 400 1555 1555 1.89 LINK ND2 ASN A 94 C1 NAG B 1 1555 1555 1.31 LINK ND2 ASN A 147 C1 NAG A 503 1555 1555 1.31 LINK ND2 ASN A 184 C1 NAG C 1 1555 1555 1.21 LINK ND2 ASN A 306 C1 NAG D 1 1555 1555 1.23 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK OE1 GLU A 259 CA CA A 510 1555 1555 2.59 LINK OE2 GLU A 259 CA CA A 510 1555 1555 2.49 LINK O TYR A 276 CA CA A 510 1555 1555 2.37 LINK CA CA A 510 O HOH A 641 1555 1555 2.34 LINK CA CA A 510 O HOH A 658 1555 1555 2.40 LINK CA CA A 510 O HOH A 662 1555 1555 2.43 CISPEP 1 ASN A 255 PRO A 256 0 -10.94 CISPEP 2 TYR A 278 PRO A 279 0 -0.96 CISPEP 3 CYS A 396 PRO A 397 0 -0.25 CRYST1 82.780 82.780 140.750 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012080 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007105 0.00000