HEADER OXIDOREDUCTASE 30-OCT-18 6I1T TITLE CALCIUM STRUCTURE OF TRICHODERMA REESEI CARBOHYDRATE-ACTIVE ENZYMES TITLE 2 FAMILY AA12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE QUINO PROTEIN GLUCOSE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA JECORINA (STRAIN ATCC 56765 / BCRC SOURCE 3 32924 / NRRL 11460 / RUT C-30); SOURCE 4 ORGANISM_COMMON: TRICHODERMA REESEI; SOURCE 5 ORGANISM_TAXID: 1344414; SOURCE 6 STRAIN: ATCC 56765 / BCRC 32924 / NRRL 11460 / RUT C-30; SOURCE 7 GENE: M419DRAFT_36756; SOURCE 8 EXPRESSION_SYSTEM: ASPERGILLUS NIGER; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 5061 KEYWDS DEHYDROGENASE, CARBOHYDRATE-ACTIVE ENZYMES, PQQ, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TURBE-DOAN,E.RECORD,V.LOMBARD,R.KUMAR,B.HENRISSAT,A.LEVASSEUR, AUTHOR 2 M.L.GARRON REVDAT 3 24-JAN-24 6I1T 1 HETSYN REVDAT 2 29-JUL-20 6I1T 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 13-NOV-19 6I1T 0 JRNL AUTH A.TURBE-DOAN,E.RECORD,V.LOMBARD,R.KUMAR,A.LEVASSEUR, JRNL AUTH 2 B.HENRISSAT,M.L.GARRON JRNL TITL THE FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OFTRICHODERMA JRNL TITL 2 REESEIDEHYDROGENASE BELONGING TO THE PQQ DEPENDENT FAMILY OF JRNL TITL 3 CARBOHYDRATE-ACTIVE ENZYMES FAMILY AA12. JRNL REF APPL.ENVIRON.MICROBIOL. 2019 JRNL REFN ESSN 1098-5336 JRNL PMID 31604773 JRNL DOI 10.1128/AEM.00964-19 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2383 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3319 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3018 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.57000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : 1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3206 ; 0.013 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2714 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4400 ; 1.750 ; 1.711 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6364 ; 1.016 ; 1.691 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 404 ; 7.390 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;38.741 ;23.397 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;11.769 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.012 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3652 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 581 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6I1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8-5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 72.235 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : 0.48300 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 6I1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 55-60% PEG 550 MME, 0.1M HEPES, PH REMARK 280 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.45250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.47850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.47850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.17875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.47850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.47850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.72625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.47850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.47850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.17875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.47850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.47850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.72625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.45250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 94 C1 NAG B 1 0.98 REMARK 500 ND2 ASN A 341 C1 NAG A 507 1.06 REMARK 500 ND2 ASN A 184 C1 NAG C 1 1.16 REMARK 500 ND2 ASN A 184 O5 NAG C 1 1.76 REMARK 500 ND2 ASN A 341 O5 NAG A 507 1.79 REMARK 500 ND2 ASN A 94 O5 NAG B 1 1.98 REMARK 500 ND2 ASN A 147 O5 NAG A 503 2.06 REMARK 500 CG ASN A 94 C1 NAG B 1 2.09 REMARK 500 ND2 ASN A 94 C2 NAG B 1 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 55 73.94 -165.91 REMARK 500 ARG A 57 -113.76 -119.71 REMARK 500 VAL A 74 -59.65 -120.48 REMARK 500 HIS A 105 -58.55 -163.36 REMARK 500 ASP A 152 -82.18 77.77 REMARK 500 ASP A 221 80.09 -156.87 REMARK 500 ASN A 231 -3.29 -142.14 REMARK 500 TRP A 285 -60.57 -100.70 REMARK 500 VAL A 404 -76.58 -124.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 1 REMARK 610 NAG C 1 REMARK 610 NAG A 507 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 511 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 240 O REMARK 620 2 ASP A 242 OD1 98.7 REMARK 620 3 HOH A 617 O 104.3 156.8 REMARK 620 4 HOH A 686 O 74.0 89.7 99.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 510 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 259 OE1 REMARK 620 2 GLU A 259 OE2 50.6 REMARK 620 3 TYR A 276 O 170.1 139.1 REMARK 620 4 HOH A 645 O 83.3 120.7 90.4 REMARK 620 5 HOH A 676 O 106.7 73.1 78.4 166.1 REMARK 620 6 HOH A 690 O 103.0 79.2 83.0 77.7 108.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6H7T RELATED DB: PDB REMARK 900 IODIDE STRUCTURE REMARK 900 RELATED ID: 6I1Q RELATED DB: PDB REMARK 900 NATIVE DBREF1 6I1T A 26 430 UNP A0A024S820_HYPJR DBREF2 6I1T A A0A024S820 26 430 SEQRES 1 A 405 CYS THR THR ASN ASN LEU GLN VAL THR TYR PRO ALA PRO SEQRES 2 A 405 VAL ALA ALA ASP GLY TRP GLU TYR ARG LEU ILE SER THR SEQRES 3 A 405 GLY LEU THR ALA PRO ARG SER ILE VAL PHE ASP SER THR SEQRES 4 A 405 GLY GLY LEU LEU VAL LEU ASP ALA GLY VAL GLY VAL ARG SEQRES 5 A 405 ARG LEU THR LEU GLN ASP ASN GLY GLY THR CYS LEU SER SEQRES 6 A 405 VAL THR ALA ASN ALA THR LEU ILE ALA ASP THR ALA LEU SEQRES 7 A 405 ASN HIS GLY LEU ALA ILE SER ALA ASP GLY GLY THR ILE SEQRES 8 A 405 TYR ALA SER THR VAL ASN ASP VAL TYR ALA TYR THR TYR SEQRES 9 A 405 ASN GLU GLN THR ASN THR VAL ASP PRO THR THR ARG ARG SEQRES 10 A 405 THR VAL VAL THR ASN MET THR ASN THR ASP HIS VAL THR SEQRES 11 A 405 ARG THR LEU LEU LEU SER SER ARG LEU PRO ASN GLU LEU SEQRES 12 A 405 LEU VAL SER ARG GLY SER ALA ALA ASN GLU ASP PRO GLN SEQRES 13 A 405 ALA ARG ASN VAL THR SER GLY HIS SER GLN ILE ARG ALA SEQRES 14 A 405 TYR ASP ILE SER THR LEU ALA ALA THR ASP PRO PRO PHE SEQRES 15 A 405 ASP PHE VAL ALA GLY THR LEU ILE GLY TRP GLY LEU ARG SEQRES 16 A 405 ASP SER VAL GLY VAL GLY GLU ASN PRO THR ASN GLY GLY SEQRES 17 A 405 ILE TRP SER VAL GLU ASN SER VAL ASP ASP LEU THR ARG SEQRES 18 A 405 GLU GLY VAL ASP VAL HIS GLN ASP ASN PRO GLY GLU GLU SEQRES 19 A 405 LEU ASN PHE HIS GLY ILE LEU GLY ASN THR ALA ASN GLN SEQRES 20 A 405 GLY GLY ASN TYR GLY TYR PRO ASP CYS TYR ALA LEU TRP SEQRES 21 A 405 SER THR ALA GLY PHE PRO ASP LEU GLY ALA LEU GLU VAL SEQRES 22 A 405 GLY ASP GLN PHE ALA SER ASP ASN ALA THR ALA GLY VAL SEQRES 23 A 405 THR ASP ALA THR CYS ASN THR ASN PHE VAL ASP PRO ARG SEQRES 24 A 405 LEU VAL PHE GLN ALA HIS VAL SER PRO LEU ASP ILE LYS SEQRES 25 A 405 PHE ASN THR ASN GLY THR THR ALA TYR ILE THR PHE HIS SEQRES 26 A 405 GLY SER THR ASP ARG THR THR PRO VAL GLY TYR SER ILE SEQRES 27 A 405 VAL SER VAL ALA PHE GLY LEU ASN GLY GLN PRO THR SER SEQRES 28 A 405 PRO MET ASP SER THR THR ALA ALA ASN ASN ILE LEU THR SEQRES 29 A 405 SER PRO ASP LEU THR GLN CYS PRO ASP ASP CYS PHE THR SEQRES 30 A 405 PRO VAL GLY LEU THR PHE ASP THR ILE GLY ARG LEU PHE SEQRES 31 A 405 PHE SER SER ASP SER THR GLY GLU ILE PHE VAL LEU GLN SEQRES 32 A 405 GLN SER HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG A 503 14 HET NAG A 506 14 HET NAG A 507 14 HET PGE A 508 10 HET PGE A 509 10 HET CA A 510 1 HET CA A 511 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PGE TRIETHYLENE GLYCOL HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 7 PGE 2(C6 H14 O4) FORMUL 9 CA 2(CA 2+) FORMUL 11 HOH *121(H2 O) HELIX 1 AA1 PRO A 138 ARG A 141 5 4 HELIX 2 AA2 ASP A 179 GLY A 188 5 10 HELIX 3 AA3 SER A 198 LEU A 200 5 3 HELIX 4 AA4 VAL A 210 GLY A 212 5 3 HELIX 5 AA5 HIS A 252 ASN A 255 5 4 HELIX 6 AA6 THR A 312 PHE A 320 1 9 HELIX 7 AA7 ASP A 392 CYS A 396 5 5 SHEET 1 AA1 5 VAL A 39 ALA A 40 0 SHEET 2 AA1 5 ASN A 385 THR A 389 -1 O THR A 389 N VAL A 39 SHEET 3 AA1 5 SER A 362 ALA A 367 -1 N SER A 365 O ASN A 385 SHEET 4 AA1 5 THR A 344 PHE A 349 -1 N PHE A 349 O SER A 362 SHEET 5 AA1 5 LYS A 337 PHE A 338 -1 N LYS A 337 O TYR A 346 SHEET 1 AA2 4 TRP A 44 SER A 50 0 SHEET 2 AA2 4 GLU A 423 GLN A 429 -1 O GLN A 428 N GLU A 45 SHEET 3 AA2 4 LEU A 414 SER A 418 -1 N LEU A 414 O LEU A 427 SHEET 4 AA2 4 PRO A 403 PHE A 408 -1 N THR A 407 O PHE A 415 SHEET 1 AA3 4 PRO A 56 PHE A 61 0 SHEET 2 AA3 4 LEU A 67 ASP A 71 -1 O LEU A 68 N VAL A 60 SHEET 3 AA3 4 GLY A 75 ASP A 83 -1 O ARG A 77 N VAL A 69 SHEET 4 AA3 4 LEU A 89 ALA A 99 -1 O ALA A 95 N ARG A 78 SHEET 1 AA4 4 LEU A 107 ILE A 109 0 SHEET 2 AA4 4 THR A 115 SER A 119 -1 O TYR A 117 N ALA A 108 SHEET 3 AA4 4 VAL A 124 ASN A 130 -1 O TYR A 125 N ALA A 118 SHEET 4 AA4 4 THR A 135 VAL A 136 -1 O THR A 135 N ASN A 130 SHEET 1 AA5 5 LEU A 107 ILE A 109 0 SHEET 2 AA5 5 THR A 115 SER A 119 -1 O TYR A 117 N ALA A 108 SHEET 3 AA5 5 VAL A 124 ASN A 130 -1 O TYR A 125 N ALA A 118 SHEET 4 AA5 5 ARG A 142 THR A 146 -1 O ARG A 142 N ALA A 126 SHEET 5 AA5 5 PHE A 207 ASP A 208 1 O PHE A 207 N VAL A 144 SHEET 1 AA6 4 LEU A 158 LEU A 160 0 SHEET 2 AA6 4 GLU A 167 ARG A 172 -1 O LEU A 169 N LEU A 159 SHEET 3 AA6 4 GLN A 191 ASP A 196 -1 O ARG A 193 N VAL A 170 SHEET 4 AA6 4 THR A 213 TRP A 217 -1 O ILE A 215 N ILE A 192 SHEET 1 AA7 4 GLY A 224 GLU A 227 0 SHEET 2 AA7 4 GLY A 233 GLU A 238 -1 O TRP A 235 N GLY A 226 SHEET 3 AA7 4 GLU A 258 ILE A 265 -1 O GLY A 264 N ILE A 234 SHEET 4 AA7 4 LEU A 325 PHE A 327 -1 O LEU A 325 N LEU A 260 SHEET 1 AA8 2 THR A 245 ARG A 246 0 SHEET 2 AA8 2 VAL A 249 ASP A 250 -1 O VAL A 249 N ARG A 246 SHEET 1 AA9 2 CYS A 281 ALA A 283 0 SHEET 2 AA9 2 GLN A 301 ALA A 303 -1 O PHE A 302 N TYR A 282 SSBOND 1 CYS A 26 CYS A 88 1555 1555 2.26 SSBOND 2 CYS A 281 CYS A 316 1555 1555 1.95 SSBOND 3 CYS A 396 CYS A 400 1555 1555 2.02 LINK ND2 ASN A 147 C1 NAG A 503 1555 1555 1.38 LINK ND2 ASN A 306 C1 NAG A 506 1555 1555 1.40 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O SER A 240 CA CA A 511 1555 1555 2.51 LINK OD1 ASP A 242 CA CA A 511 1555 1555 2.35 LINK OE1 GLU A 259 CA CA A 510 1555 1555 2.58 LINK OE2 GLU A 259 CA CA A 510 1555 1555 2.49 LINK O TYR A 276 CA CA A 510 1555 1555 2.42 LINK CA CA A 510 O HOH A 645 1555 1555 2.50 LINK CA CA A 510 O HOH A 676 1555 1555 2.45 LINK CA CA A 510 O HOH A 690 1555 1555 2.33 LINK CA CA A 511 O HOH A 617 1555 1555 2.29 LINK CA CA A 511 O HOH A 686 1555 1555 2.21 CISPEP 1 ASN A 255 PRO A 256 0 -10.21 CISPEP 2 TYR A 278 PRO A 279 0 0.78 CISPEP 3 CYS A 396 PRO A 397 0 5.69 CRYST1 82.957 82.957 146.905 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012054 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006807 0.00000