data_6I1W # _entry.id 6I1W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.318 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6I1W WWPDB D_1200010715 BMRB 34324 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Structure of the RNA duplex containing pseudouridine residue (5'-Gp(PSU)pC-3' sequence context) ; _pdbx_database_related.db_id 34324 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6I1W _pdbx_database_status.recvd_initial_deposition_date 2018-10-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Deb, I.' 1 ? 'Popenda, L.' 2 ? 'Sarzynska, J.' 3 ? 'Gdaniec, Z.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 16278 _citation.page_last 16278 _citation.title 'Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-019-52637-0 _citation.pdbx_database_id_PubMed 31700156 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Deb, I.' 1 0000-0002-2722-582X primary 'Popenda, L.' 2 ? primary 'Sarzynska, J.' 3 ? primary 'Malgowska, M.' 4 ? primary 'Lahiri, A.' 5 ? primary 'Gdaniec, Z.' 6 0000-0003-2955-1829 primary 'Kierzek, R.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*CP*AP*GP*(PSU)P*CP*AP*GP*U)-3') ; 2832.727 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*AP*CP*UP*GP*AP*CP*UP*GP*A)-3') ; 2855.767 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'UCAG(PSU)CAGU' UCAGUCAGU A ? 2 polyribonucleotide no no ACUGACUGA ACUGACUGA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 C n 1 3 A n 1 4 G n 1 5 PSU n 1 6 C n 1 7 A n 1 8 G n 1 9 U n 2 1 A n 2 2 C n 2 3 U n 2 4 G n 2 5 A n 2 6 C n 2 7 U n 2 8 G n 2 9 A n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 9 'synthetic construct' ? 32630 ? 2 1 sample 1 9 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6I1W 6I1W ? 1 ? 1 2 PDB 6I1W 6I1W ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6I1W A 1 ? 9 ? 6I1W 1 ? 9 ? 1 9 2 2 6I1W B 1 ? 9 ? 6I1W 10 ? 18 ? 10 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 2 1 '2D 1H-1H NOESY' 1 isotropic 3 3 2 '2D 1H-1H NOESY' 1 isotropic 4 1 1 '2D DQF-COSY' 1 isotropic 5 1 1 '2D 1H-13C HSQC' 1 isotropic 6 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic 7 1 1 '2D 1H-31P COSY' 1 isotropic 8 1 1 '2D 1H-31P hetero TOCSY-NOESY' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm ambient 6.8 0.16 ? ? M 25C ? pH ? ? K 2 303 atm ambient 6.8 0.16 ? ? M 30C ? pH ? ? K 3 288 atm ambient 6.8 0.16 ? ? M 15C ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.5 mM pUCAG(PSU)CAGU, 0.5 mM pACUGACUGA, 10 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM EDTA, 100% D2O' '100% D2O' seq_b_D2O solution ? 2 '0.5 mM pUCAG(PSU)CAGU, 0.5 mM pACUGACUGA, 10 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM EDTA, 90% H2O/10% D2O' '90% H2O/10% D2O' seq_b_H2O solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 6I1W 'simulated annealing' ? 6 6I1W 'simulated annealing' ? 7 # _pdbx_nmr_ensemble.entry_id 6I1W _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6I1W _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing TopSpin ? 'Bruker Biospin' 3 'peak picking' Felix ? 'Accelrys Software Inc.' 4 'chemical shift assignment' Felix ? 'Accelrys Software Inc.' 5 'data analysis' Felix ? 'Accelrys Software Inc.' 6 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 7 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6I1W _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6I1W _struct.title ;Structure of the RNA duplex containing pseudouridine residue (5'-Gp(PSU)pC-3' sequence context) ; _struct.pdbx_descriptor ;RNA (5'-R(*UP*CP*AP*GP*(PSU)P*CP*AP*GP*U)-3'), RNA (5'-R(*AP*CP*UP*GP*AP*CP*UP*GP*A)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6I1W _struct_keywords.text 'duplex, pseudouridine, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A G 4 "O3'" ? ? ? 1_555 A PSU 5 P ? ? A G 4 A PSU 5 1_555 ? ? ? ? ? ? ? 1.607 ? covale2 covale both ? A PSU 5 "O3'" ? ? ? 1_555 A C 6 P ? ? A PSU 5 A C 6 1_555 ? ? ? ? ? ? ? 1.604 ? hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 1 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 1 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 2 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 2 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 2 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 3 B U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 3 B U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 4 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 4 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 4 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A PSU 5 N3 ? ? ? 1_555 B A 5 N1 ? ? A PSU 5 B A 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog12 hydrog ? ? A PSU 5 O2 ? ? ? 1_555 B A 5 N6 ? ? A PSU 5 B A 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog13 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 6 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 6 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 6 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 7 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 7 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 1 N1 ? ? A U 9 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A U 9 O4 ? ? ? 1_555 B A 1 N6 ? ? A U 9 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 6I1W _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 PSU 5 5 5 PSU PSU A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n B 2 1 A 1 10 10 A A B . n B 2 2 C 2 11 11 C C B . n B 2 3 U 3 12 12 U U B . n B 2 4 G 4 13 13 G G B . n B 2 5 A 5 14 14 A A B . n B 2 6 C 6 15 15 C C B . n B 2 7 U 7 16 16 U U B . n B 2 8 G 8 17 17 G G B . n B 2 9 A 9 18 18 A A B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1440 ? 1 MORE 2 ? 1 'SSA (A^2)' 3430 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2019-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'pUCAG(PSU)CAGU' 0.5 ? mM 'natural abundance' 1 pACUGACUGA 0.5 ? mM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 'sodium chloride' 150 ? mM 'natural abundance' 1 EDTA 0.1 ? mM 'natural abundance' 2 'pUCAG(PSU)CAGU' 0.5 ? mM 'natural abundance' 2 pACUGACUGA 0.5 ? mM 'natural abundance' 2 'sodium phosphate' 10 ? mM 'natural abundance' 2 'sodium chloride' 150 ? mM 'natural abundance' 2 EDTA 0.1 ? mM 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 116.97 121.90 -4.93 0.70 N 2 1 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.81 117.00 -3.19 0.50 N 3 1 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.21 117.70 3.51 0.50 N 4 1 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.81 118.60 -4.79 0.60 N 5 1 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 116.96 121.90 -4.94 0.70 N 6 1 C4 A A 7 ? ? C5 A A 7 ? ? C6 A A 7 ? ? 113.83 117.00 -3.17 0.50 N 7 1 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.20 117.70 3.50 0.50 N 8 1 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 113.90 118.60 -4.70 0.60 N 9 1 C5 B A 10 ? ? C6 B A 10 ? ? N1 B A 10 ? ? 121.16 117.70 3.46 0.50 N 10 1 N1 B A 10 ? ? C6 B A 10 ? ? N6 B A 10 ? ? 113.82 118.60 -4.78 0.60 N 11 1 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.27 121.90 -4.63 0.70 N 12 1 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 121.07 117.70 3.37 0.50 N 13 1 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 114.02 118.60 -4.58 0.60 N 14 1 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 116.92 121.90 -4.98 0.70 N 15 1 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.82 117.00 -3.18 0.50 N 16 1 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.21 117.70 3.51 0.50 N 17 1 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.60 118.60 -5.00 0.60 N 18 2 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.05 121.90 -4.85 0.70 N 19 2 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.81 117.00 -3.19 0.50 N 20 2 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.14 117.70 3.44 0.50 N 21 2 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.88 118.60 -4.72 0.60 N 22 2 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 116.94 121.90 -4.96 0.70 N 23 2 C4 A A 7 ? ? C5 A A 7 ? ? C6 A A 7 ? ? 113.85 117.00 -3.15 0.50 N 24 2 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.25 117.70 3.55 0.50 N 25 2 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 113.88 118.60 -4.72 0.60 N 26 2 C5 B A 10 ? ? C6 B A 10 ? ? N1 B A 10 ? ? 121.08 117.70 3.38 0.50 N 27 2 N1 B A 10 ? ? C6 B A 10 ? ? N6 B A 10 ? ? 113.82 118.60 -4.78 0.60 N 28 2 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.22 121.90 -4.68 0.70 N 29 2 C4 B A 14 ? ? C5 B A 14 ? ? C6 B A 14 ? ? 113.96 117.00 -3.04 0.50 N 30 2 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 121.09 117.70 3.39 0.50 N 31 2 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 113.91 118.60 -4.69 0.60 N 32 2 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 116.98 121.90 -4.92 0.70 N 33 2 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.79 117.00 -3.21 0.50 N 34 2 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.20 117.70 3.50 0.50 N 35 2 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.64 118.60 -4.96 0.60 N 36 3 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 116.97 121.90 -4.93 0.70 N 37 3 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.78 117.00 -3.22 0.50 N 38 3 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.13 117.70 3.43 0.50 N 39 3 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.99 118.60 -4.61 0.60 N 40 3 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 116.91 121.90 -4.99 0.70 N 41 3 C4 A A 7 ? ? C5 A A 7 ? ? C6 A A 7 ? ? 113.97 117.00 -3.03 0.50 N 42 3 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.18 117.70 3.48 0.50 N 43 3 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 113.89 118.60 -4.71 0.60 N 44 3 C5 B A 10 ? ? C6 B A 10 ? ? N1 B A 10 ? ? 121.12 117.70 3.42 0.50 N 45 3 N1 B A 10 ? ? C6 B A 10 ? ? N6 B A 10 ? ? 113.84 118.60 -4.76 0.60 N 46 3 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.28 121.90 -4.62 0.70 N 47 3 C4 B A 14 ? ? C5 B A 14 ? ? C6 B A 14 ? ? 113.97 117.00 -3.03 0.50 N 48 3 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 121.11 117.70 3.41 0.50 N 49 3 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 113.86 118.60 -4.74 0.60 N 50 3 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 117.04 121.90 -4.86 0.70 N 51 3 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.82 117.00 -3.18 0.50 N 52 3 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.26 117.70 3.56 0.50 N 53 3 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.58 118.60 -5.02 0.60 N 54 4 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 116.99 121.90 -4.91 0.70 N 55 4 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.79 117.00 -3.21 0.50 N 56 4 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.15 117.70 3.45 0.50 N 57 4 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.80 118.60 -4.80 0.60 N 58 4 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.06 121.90 -4.84 0.70 N 59 4 C4 A A 7 ? ? C5 A A 7 ? ? C6 A A 7 ? ? 113.86 117.00 -3.14 0.50 N 60 4 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.27 117.70 3.57 0.50 N 61 4 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 113.88 118.60 -4.72 0.60 N 62 4 C5 B A 10 ? ? C6 B A 10 ? ? N1 B A 10 ? ? 121.15 117.70 3.45 0.50 N 63 4 N1 B A 10 ? ? C6 B A 10 ? ? N6 B A 10 ? ? 113.75 118.60 -4.85 0.60 N 64 4 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.25 121.90 -4.65 0.70 N 65 4 C4 B A 14 ? ? C5 B A 14 ? ? C6 B A 14 ? ? 113.95 117.00 -3.05 0.50 N 66 4 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 121.10 117.70 3.40 0.50 N 67 4 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 113.95 118.60 -4.65 0.60 N 68 4 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 116.98 121.90 -4.92 0.70 N 69 4 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.82 117.00 -3.18 0.50 N 70 4 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.22 117.70 3.52 0.50 N 71 4 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.58 118.60 -5.02 0.60 N 72 5 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.08 121.90 -4.82 0.70 N 73 5 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.80 117.00 -3.20 0.50 N 74 5 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.22 117.70 3.52 0.50 N 75 5 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.68 118.60 -4.92 0.60 N 76 5 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.01 121.90 -4.89 0.70 N 77 5 C4 A A 7 ? ? C5 A A 7 ? ? C6 A A 7 ? ? 113.89 117.00 -3.11 0.50 N 78 5 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.14 117.70 3.44 0.50 N 79 5 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 113.84 118.60 -4.76 0.60 N 80 5 C5 B A 10 ? ? C6 B A 10 ? ? N1 B A 10 ? ? 121.19 117.70 3.49 0.50 N 81 5 N1 B A 10 ? ? C6 B A 10 ? ? N6 B A 10 ? ? 113.84 118.60 -4.76 0.60 N 82 5 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.19 121.90 -4.71 0.70 N 83 5 C4 B A 14 ? ? C5 B A 14 ? ? C6 B A 14 ? ? 113.96 117.00 -3.04 0.50 N 84 5 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 121.14 117.70 3.44 0.50 N 85 5 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 113.99 118.60 -4.61 0.60 N 86 5 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 116.88 121.90 -5.02 0.70 N 87 5 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.80 117.00 -3.20 0.50 N 88 5 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.18 117.70 3.48 0.50 N 89 5 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.59 118.60 -5.01 0.60 N 90 6 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.00 121.90 -4.90 0.70 N 91 6 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.74 117.00 -3.26 0.50 N 92 6 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.23 117.70 3.53 0.50 N 93 6 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.81 118.60 -4.79 0.60 N 94 6 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.02 121.90 -4.88 0.70 N 95 6 C4 A A 7 ? ? C5 A A 7 ? ? C6 A A 7 ? ? 113.90 117.00 -3.10 0.50 N 96 6 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.20 117.70 3.50 0.50 N 97 6 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 113.84 118.60 -4.76 0.60 N 98 6 C5 B A 10 ? ? C6 B A 10 ? ? N1 B A 10 ? ? 121.23 117.70 3.53 0.50 N 99 6 N1 B A 10 ? ? C6 B A 10 ? ? N6 B A 10 ? ? 113.81 118.60 -4.79 0.60 N 100 6 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.23 121.90 -4.67 0.70 N 101 6 C4 B A 14 ? ? C5 B A 14 ? ? C6 B A 14 ? ? 113.94 117.00 -3.06 0.50 N 102 6 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 121.10 117.70 3.40 0.50 N 103 6 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 113.94 118.60 -4.66 0.60 N 104 6 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 116.87 121.90 -5.03 0.70 N 105 6 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.74 117.00 -3.26 0.50 N 106 6 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.24 117.70 3.54 0.50 N 107 6 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.60 118.60 -5.00 0.60 N 108 7 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.00 121.90 -4.90 0.70 N 109 7 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.80 117.00 -3.20 0.50 N 110 7 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.12 117.70 3.42 0.50 N 111 7 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.79 118.60 -4.81 0.60 N 112 7 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 116.95 121.90 -4.95 0.70 N 113 7 C4 A A 7 ? ? C5 A A 7 ? ? C6 A A 7 ? ? 113.85 117.00 -3.15 0.50 N 114 7 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.23 117.70 3.53 0.50 N 115 7 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 113.89 118.60 -4.71 0.60 N 116 7 C5 B A 10 ? ? C6 B A 10 ? ? N1 B A 10 ? ? 121.22 117.70 3.52 0.50 N 117 7 N1 B A 10 ? ? C6 B A 10 ? ? N6 B A 10 ? ? 113.81 118.60 -4.79 0.60 N 118 7 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.23 121.90 -4.67 0.70 N 119 7 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 121.11 117.70 3.41 0.50 N 120 7 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 113.86 118.60 -4.74 0.60 N 121 7 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 116.94 121.90 -4.96 0.70 N 122 7 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.80 117.00 -3.20 0.50 N 123 7 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.23 117.70 3.53 0.50 N 124 7 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.58 118.60 -5.02 0.60 N 125 8 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.17 121.90 -4.73 0.70 N 126 8 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.85 117.00 -3.15 0.50 N 127 8 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.08 117.70 3.38 0.50 N 128 8 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.88 118.60 -4.72 0.60 N 129 8 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 116.94 121.90 -4.96 0.70 N 130 8 C4 A A 7 ? ? C5 A A 7 ? ? C6 A A 7 ? ? 113.92 117.00 -3.08 0.50 N 131 8 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.18 117.70 3.48 0.50 N 132 8 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 113.90 118.60 -4.70 0.60 N 133 8 C5 B A 10 ? ? C6 B A 10 ? ? N1 B A 10 ? ? 121.17 117.70 3.47 0.50 N 134 8 N1 B A 10 ? ? C6 B A 10 ? ? N6 B A 10 ? ? 113.82 118.60 -4.78 0.60 N 135 8 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.30 121.90 -4.60 0.70 N 136 8 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 121.06 117.70 3.36 0.50 N 137 8 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 113.97 118.60 -4.63 0.60 N 138 8 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 116.90 121.90 -5.00 0.70 N 139 8 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.79 117.00 -3.21 0.50 N 140 8 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.13 117.70 3.43 0.50 N 141 8 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.60 118.60 -5.00 0.60 N 142 9 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 116.96 121.90 -4.94 0.70 N 143 9 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.80 117.00 -3.20 0.50 N 144 9 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.18 117.70 3.48 0.50 N 145 9 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.89 118.60 -4.71 0.60 N 146 9 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.00 121.90 -4.90 0.70 N 147 9 C4 A A 7 ? ? C5 A A 7 ? ? C6 A A 7 ? ? 113.96 117.00 -3.04 0.50 N 148 9 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.14 117.70 3.44 0.50 N 149 9 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 113.92 118.60 -4.68 0.60 N 150 9 C5 B A 10 ? ? C6 B A 10 ? ? N1 B A 10 ? ? 121.15 117.70 3.45 0.50 N 151 9 N1 B A 10 ? ? C6 B A 10 ? ? N6 B A 10 ? ? 113.77 118.60 -4.83 0.60 N 152 9 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.23 121.90 -4.67 0.70 N 153 9 C4 B A 14 ? ? C5 B A 14 ? ? C6 B A 14 ? ? 113.99 117.00 -3.01 0.50 N 154 9 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 121.09 117.70 3.39 0.50 N 155 9 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 113.89 118.60 -4.71 0.60 N 156 9 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 117.07 121.90 -4.83 0.70 N 157 9 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.74 117.00 -3.26 0.50 N 158 9 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.26 117.70 3.56 0.50 N 159 9 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.54 118.60 -5.06 0.60 N 160 10 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 116.97 121.90 -4.93 0.70 N 161 10 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.74 117.00 -3.26 0.50 N 162 10 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.18 117.70 3.48 0.50 N 163 10 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.83 118.60 -4.77 0.60 N 164 10 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 116.99 121.90 -4.91 0.70 N 165 10 C4 A A 7 ? ? C5 A A 7 ? ? C6 A A 7 ? ? 113.90 117.00 -3.10 0.50 N 166 10 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.17 117.70 3.47 0.50 N 167 10 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 114.00 118.60 -4.60 0.60 N 168 10 C5 B A 10 ? ? C6 B A 10 ? ? N1 B A 10 ? ? 121.21 117.70 3.51 0.50 N 169 10 N1 B A 10 ? ? C6 B A 10 ? ? N6 B A 10 ? ? 113.76 118.60 -4.84 0.60 N 170 10 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.21 121.90 -4.69 0.70 N 171 10 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 121.03 117.70 3.33 0.50 N 172 10 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 113.98 118.60 -4.62 0.60 N 173 10 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 117.01 121.90 -4.89 0.70 N 174 10 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.80 117.00 -3.20 0.50 N 175 10 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.16 117.70 3.46 0.50 N 176 10 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.60 118.60 -5.00 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A B 10 ? ? 0.065 'SIDE CHAIN' 2 2 A A 7 ? ? 0.053 'SIDE CHAIN' 3 2 A B 10 ? ? 0.065 'SIDE CHAIN' 4 3 A B 10 ? ? 0.065 'SIDE CHAIN' 5 4 A B 10 ? ? 0.065 'SIDE CHAIN' 6 5 A B 10 ? ? 0.066 'SIDE CHAIN' 7 6 A A 7 ? ? 0.053 'SIDE CHAIN' 8 6 A B 10 ? ? 0.065 'SIDE CHAIN' 9 7 A A 7 ? ? 0.053 'SIDE CHAIN' 10 7 A B 10 ? ? 0.065 'SIDE CHAIN' 11 8 A B 10 ? ? 0.065 'SIDE CHAIN' 12 9 A A 7 ? ? 0.053 'SIDE CHAIN' 13 9 A B 10 ? ? 0.065 'SIDE CHAIN' 14 10 A A 7 ? ? 0.060 'SIDE CHAIN' 15 10 A B 10 ? ? 0.066 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 6I1W _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 1 1_555 B A 9 1_555 -0.209 0.030 -0.204 3.439 -14.880 -1.118 1 A_U1:A18_B A 1 ? B 18 ? 20 1 1 A C 2 1_555 B G 8 1_555 0.337 -0.103 0.137 2.396 -11.326 -0.480 2 A_C2:G17_B A 2 ? B 17 ? 19 1 1 A A 3 1_555 B U 7 1_555 0.064 -0.012 0.060 1.439 -10.498 -0.039 3 A_A3:U16_B A 3 ? B 16 ? 20 1 1 A G 4 1_555 B C 6 1_555 -0.378 -0.124 0.114 3.050 -10.300 -0.483 4 A_G4:C15_B A 4 ? B 15 ? 19 1 1 A PSU 5 1_555 B A 5 1_555 -0.239 -0.010 0.061 -1.902 -9.721 -4.466 5 A_PSU5:A14_B A 5 ? B 14 ? 21 1 1 A C 6 1_555 B G 4 1_555 0.342 -0.109 0.185 -3.056 -9.204 -0.441 6 A_C6:G13_B A 6 ? B 13 ? 19 1 1 A A 7 1_555 B U 3 1_555 0.132 0.006 0.083 -0.273 -9.055 -0.735 7 A_A7:U12_B A 7 ? B 12 ? 20 1 1 A G 8 1_555 B C 2 1_555 -0.413 -0.141 -0.031 -5.083 -17.465 0.202 8 A_G8:C11_B A 8 ? B 11 ? 19 1 1 A U 9 1_555 B A 1 1_555 -0.127 0.035 0.084 -8.508 -13.601 -1.637 9 A_U9:A10_B A 9 ? B 10 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 1 1_555 B A 9 1_555 A C 2 1_555 B G 8 1_555 0.319 -1.549 3.341 -1.551 8.468 33.594 -3.855 -0.766 2.861 14.360 2.630 34.648 1 AA_U1C2:G17A18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A C 2 1_555 B G 8 1_555 A A 3 1_555 B U 7 1_555 -0.058 -1.506 3.165 0.269 11.423 32.609 -4.123 0.135 2.511 19.608 -0.462 34.501 2 AA_C2A3:U16G17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A A 3 1_555 B U 7 1_555 A G 4 1_555 B C 6 1_555 -0.039 -1.879 3.172 -1.943 6.037 28.697 -4.888 -0.303 2.725 11.995 3.860 29.375 3 AA_A3G4:C15U16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A G 4 1_555 B C 6 1_555 A PSU 5 1_555 B A 5 1_555 -0.023 -2.272 3.408 -0.489 3.046 31.208 -4.783 -0.050 3.178 5.645 0.906 31.357 4 AA_G4PSU5:A14C15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A PSU 5 1_555 B A 5 1_555 A C 6 1_555 B G 4 1_555 0.319 -2.081 3.237 1.606 7.162 33.189 -4.624 -0.307 2.753 12.351 -2.769 33.969 5 AA_PSU5C6:G13A14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A C 6 1_555 B G 4 1_555 A A 7 1_555 B U 3 1_555 -0.113 -1.552 3.124 1.530 8.237 31.246 -4.093 0.446 2.631 14.959 -2.779 32.322 6 AA_C6A7:U12G13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A A 7 1_555 B U 3 1_555 A G 8 1_555 B C 2 1_555 -0.002 -1.484 3.333 1.144 8.348 30.489 -4.210 0.208 2.835 15.505 -2.124 31.605 7 AA_A7G8:C11U12_BB A 7 ? B 12 ? A 8 ? B 11 ? 1 A G 8 1_555 B C 2 1_555 A U 9 1_555 B A 1 1_555 0.011 -1.279 3.324 -0.954 6.801 35.587 -2.994 -0.150 3.035 11.001 1.544 36.222 8 AA_G8U9:A10C11_BB A 8 ? B 11 ? A 9 ? B 10 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal ? Italy 'S/IND 15-05' 1 ? Poland UMO-2013/08/A/ST5/00295 2 ? Poland UMO-2017/25/B/ST5/00971 3 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PSU _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PSU _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #