HEADER TRANSCRIPTION 31-OCT-18 6I22 TITLE FLAVIN ANALOGUE SHEDS LIGHT ON LIGHT-OXYGEN-VOLTAGE DOMAIN MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUREOCHROME1-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCHROMONAS DANICA; SOURCE 3 ORGANISM_COMMON: GOLDEN ALGA; SOURCE 4 ORGANISM_TAXID: 2986; SOURCE 5 GENE: ODAUREO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LOV DOMAIN, FMN, DARK GROWN, FLUORESCENCE, LIGHT SENSING, KEYWDS 2 TRANSCRIPTION FACTOR PAS DOMAIN, OCHRONOMAS DANICA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,M.E.KALVAITIS,R.K.ALLEMANN,R.J.MART,L.A.JOHNSON REVDAT 3 24-JAN-24 6I22 1 REMARK REVDAT 2 19-JUN-19 6I22 1 JRNL REVDAT 1 29-MAY-19 6I22 0 JRNL AUTH M.E.KALVAITIS,L.A.JOHNSON,R.J.MART,P.RIZKALLAH,R.K.ALLEMANN JRNL TITL A NONCANONICAL CHROMOPHORE REVEALS STRUCTURAL REARRANGEMENTS JRNL TITL 2 OF THE LIGHT-OXYGEN-VOLTAGE DOMAIN UPON PHOTOACTIVATION. JRNL REF BIOCHEMISTRY V. 58 2608 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31082213 JRNL DOI 10.1021/ACS.BIOCHEM.9B00255 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 111245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5747 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8264 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 453 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.528 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4467 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4043 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6091 ; 1.660 ; 1.690 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9413 ; 1.421 ; 1.601 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 556 ; 6.471 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;32.814 ;23.554 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 743 ;15.257 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.434 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5033 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 909 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2170 ; 1.431 ; 2.377 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2169 ; 1.431 ; 2.374 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2717 ; 2.293 ; 3.544 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2718 ; 2.293 ; 3.547 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2297 ; 2.101 ; 2.736 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2296 ; 2.101 ; 2.736 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3366 ; 3.327 ; 3.972 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5560 ; 6.902 ;29.701 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5561 ; 6.902 ;29.699 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 179 311 B 179 311 4191 0.10 0.05 REMARK 3 2 A 179 310 C 179 310 3861 0.14 0.05 REMARK 3 3 A 179 310 D 179 310 3864 0.14 0.05 REMARK 3 4 B 179 310 C 179 310 3882 0.13 0.05 REMARK 3 5 B 179 310 D 179 310 3880 0.13 0.05 REMARK 3 6 C 178 311 D 178 311 4264 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3523 -1.9777 25.5966 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.0645 REMARK 3 T33: 0.0368 T12: -0.0241 REMARK 3 T13: -0.0079 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.5547 L22: 2.5586 REMARK 3 L33: 3.7380 L12: 1.1047 REMARK 3 L13: 0.4186 L23: 0.0943 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: 0.1094 S13: -0.2924 REMARK 3 S21: -0.0564 S22: 0.0000 S23: -0.0466 REMARK 3 S31: 0.3878 S32: -0.1004 S33: -0.0516 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 178 B 311 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9555 1.2548 8.2688 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.0671 REMARK 3 T33: 0.0729 T12: -0.0237 REMARK 3 T13: -0.0151 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 3.7235 L22: 2.8913 REMARK 3 L33: 2.5555 L12: 0.4030 REMARK 3 L13: 0.2368 L23: 0.9640 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.0872 S13: 0.4853 REMARK 3 S21: -0.0559 S22: -0.0358 S23: -0.0368 REMARK 3 S31: -0.2695 S32: 0.1302 S33: 0.0974 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 178 C 311 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2906 26.9683 23.7074 REMARK 3 T TENSOR REMARK 3 T11: 0.0596 T22: 0.0307 REMARK 3 T33: 0.0317 T12: 0.0050 REMARK 3 T13: 0.0082 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.9864 L22: 2.2258 REMARK 3 L33: 3.5377 L12: 0.5810 REMARK 3 L13: -0.0328 L23: 0.1516 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.1479 S13: 0.2277 REMARK 3 S21: -0.0952 S22: -0.0326 S23: 0.0896 REMARK 3 S31: -0.4211 S32: -0.0138 S33: -0.0063 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 179 D 311 REMARK 3 ORIGIN FOR THE GROUP (A): 61.8940 18.0655 4.9145 REMARK 3 T TENSOR REMARK 3 T11: 0.0403 T22: 0.0295 REMARK 3 T33: 0.0571 T12: -0.0187 REMARK 3 T13: 0.0129 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 3.6464 L22: 2.0369 REMARK 3 L33: 2.0238 L12: -0.1147 REMARK 3 L13: -0.1919 L23: -0.6727 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.0034 S13: -0.4249 REMARK 3 S21: -0.0906 S22: -0.0296 S23: 0.0775 REMARK 3 S31: 0.2229 S32: -0.1373 S33: 0.0544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 - 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117045 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 71.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 1.02900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5A8B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5-3 M NA MALONATE, 0.1 M REMARK 280 TRIS.ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.09000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.09000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 536 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 501 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 178 REMARK 465 GLY B 178 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 179 OD1 ASP B 181 2.10 REMARK 500 OE1 GLU B 311 O HOH B 501 2.13 REMARK 500 NH1 ARG C 228 O HOH C 501 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 516 O HOH D 516 2655 1.64 REMARK 500 O HOH C 512 O HOH C 512 2656 1.74 REMARK 500 O HOH D 516 O HOH D 602 2655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 180 118.87 -24.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 620 DISTANCE = 6.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN D 401 DBREF 6I22 A 181 311 UNP C5NSW6 C5NSW6_OCHDN 181 311 DBREF 6I22 B 181 311 UNP C5NSW6 C5NSW6_OCHDN 181 311 DBREF 6I22 C 181 311 UNP C5NSW6 C5NSW6_OCHDN 181 311 DBREF 6I22 D 181 311 UNP C5NSW6 C5NSW6_OCHDN 181 311 SEQADV 6I22 GLY A 178 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 ALA A 179 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 MET A 180 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 GLY B 178 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 ALA B 179 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 MET B 180 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 GLY C 178 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 ALA C 179 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 MET C 180 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 GLY D 178 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 ALA D 179 UNP C5NSW6 EXPRESSION TAG SEQADV 6I22 MET D 180 UNP C5NSW6 EXPRESSION TAG SEQRES 1 A 134 GLY ALA MET ASP TYR SER LEU VAL LYS ALA LEU GLN THR SEQRES 2 A 134 ALA GLN GLN ASN PHE VAL ILE SER ASP PRO SER ILE PRO SEQRES 3 A 134 ASP ASN PRO ILE VAL TYR ALA SER GLN GLY PHE LEU THR SEQRES 4 A 134 LEU THR GLY TYR ALA LEU SER GLU VAL LEU GLY ARG ASN SEQRES 5 A 134 CYS ARG PHE LEU GLN GLY PRO GLU THR ASP PRO LYS ALA SEQRES 6 A 134 VAL GLU LYS VAL ARG LYS GLY LEU GLU ARG GLY GLU ASP SEQRES 7 A 134 THR THR VAL VAL LEU LEU ASN TYR ARG LYS ASP GLY SER SEQRES 8 A 134 THR PHE TRP ASN GLN LEU PHE ILE ALA ALA LEU ARG ASP SEQRES 9 A 134 GLY GLU GLY ASN VAL VAL ASN TYR LEU GLY VAL GLN CYS SEQRES 10 A 134 LYS VAL SER GLU ASP TYR ALA LYS ALA PHE LEU LYS ASN SEQRES 11 A 134 GLU GLU ASN GLU SEQRES 1 B 134 GLY ALA MET ASP TYR SER LEU VAL LYS ALA LEU GLN THR SEQRES 2 B 134 ALA GLN GLN ASN PHE VAL ILE SER ASP PRO SER ILE PRO SEQRES 3 B 134 ASP ASN PRO ILE VAL TYR ALA SER GLN GLY PHE LEU THR SEQRES 4 B 134 LEU THR GLY TYR ALA LEU SER GLU VAL LEU GLY ARG ASN SEQRES 5 B 134 CYS ARG PHE LEU GLN GLY PRO GLU THR ASP PRO LYS ALA SEQRES 6 B 134 VAL GLU LYS VAL ARG LYS GLY LEU GLU ARG GLY GLU ASP SEQRES 7 B 134 THR THR VAL VAL LEU LEU ASN TYR ARG LYS ASP GLY SER SEQRES 8 B 134 THR PHE TRP ASN GLN LEU PHE ILE ALA ALA LEU ARG ASP SEQRES 9 B 134 GLY GLU GLY ASN VAL VAL ASN TYR LEU GLY VAL GLN CYS SEQRES 10 B 134 LYS VAL SER GLU ASP TYR ALA LYS ALA PHE LEU LYS ASN SEQRES 11 B 134 GLU GLU ASN GLU SEQRES 1 C 134 GLY ALA MET ASP TYR SER LEU VAL LYS ALA LEU GLN THR SEQRES 2 C 134 ALA GLN GLN ASN PHE VAL ILE SER ASP PRO SER ILE PRO SEQRES 3 C 134 ASP ASN PRO ILE VAL TYR ALA SER GLN GLY PHE LEU THR SEQRES 4 C 134 LEU THR GLY TYR ALA LEU SER GLU VAL LEU GLY ARG ASN SEQRES 5 C 134 CYS ARG PHE LEU GLN GLY PRO GLU THR ASP PRO LYS ALA SEQRES 6 C 134 VAL GLU LYS VAL ARG LYS GLY LEU GLU ARG GLY GLU ASP SEQRES 7 C 134 THR THR VAL VAL LEU LEU ASN TYR ARG LYS ASP GLY SER SEQRES 8 C 134 THR PHE TRP ASN GLN LEU PHE ILE ALA ALA LEU ARG ASP SEQRES 9 C 134 GLY GLU GLY ASN VAL VAL ASN TYR LEU GLY VAL GLN CYS SEQRES 10 C 134 LYS VAL SER GLU ASP TYR ALA LYS ALA PHE LEU LYS ASN SEQRES 11 C 134 GLU GLU ASN GLU SEQRES 1 D 134 GLY ALA MET ASP TYR SER LEU VAL LYS ALA LEU GLN THR SEQRES 2 D 134 ALA GLN GLN ASN PHE VAL ILE SER ASP PRO SER ILE PRO SEQRES 3 D 134 ASP ASN PRO ILE VAL TYR ALA SER GLN GLY PHE LEU THR SEQRES 4 D 134 LEU THR GLY TYR ALA LEU SER GLU VAL LEU GLY ARG ASN SEQRES 5 D 134 CYS ARG PHE LEU GLN GLY PRO GLU THR ASP PRO LYS ALA SEQRES 6 D 134 VAL GLU LYS VAL ARG LYS GLY LEU GLU ARG GLY GLU ASP SEQRES 7 D 134 THR THR VAL VAL LEU LEU ASN TYR ARG LYS ASP GLY SER SEQRES 8 D 134 THR PHE TRP ASN GLN LEU PHE ILE ALA ALA LEU ARG ASP SEQRES 9 D 134 GLY GLU GLY ASN VAL VAL ASN TYR LEU GLY VAL GLN CYS SEQRES 10 D 134 LYS VAL SER GLU ASP TYR ALA LYS ALA PHE LEU LYS ASN SEQRES 11 D 134 GLU GLU ASN GLU HET FMN A 401 31 HET FMN B 401 31 HET FMN C 401 31 HET FMN D 401 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 5 FMN 4(C17 H21 N4 O9 P) FORMUL 9 HOH *530(H2 O) HELIX 1 AA1 TYR A 182 ALA A 191 1 10 HELIX 2 AA2 SER A 211 GLY A 219 1 9 HELIX 3 AA3 ALA A 221 LEU A 226 1 6 HELIX 4 AA4 ASN A 229 GLN A 234 5 6 HELIX 5 AA5 ASP A 239 ARG A 252 1 14 HELIX 6 AA6 SER A 297 GLU A 309 1 13 HELIX 7 AA7 TYR B 182 ALA B 191 1 10 HELIX 8 AA8 SER B 211 GLY B 219 1 9 HELIX 9 AA9 ALA B 221 LEU B 226 1 6 HELIX 10 AB1 ASN B 229 GLN B 234 5 6 HELIX 11 AB2 ASP B 239 ARG B 252 1 14 HELIX 12 AB3 SER B 297 GLU B 309 1 13 HELIX 13 AB4 TYR C 182 ALA C 191 1 10 HELIX 14 AB5 SER C 211 GLY C 219 1 9 HELIX 15 AB6 ALA C 221 VAL C 225 5 5 HELIX 16 AB7 ASN C 229 GLN C 234 5 6 HELIX 17 AB8 ASP C 239 ARG C 252 1 14 HELIX 18 AB9 SER C 297 GLU C 309 1 13 HELIX 19 AC1 TYR D 182 ALA D 191 1 10 HELIX 20 AC2 SER D 211 GLY D 219 1 9 HELIX 21 AC3 ALA D 221 VAL D 225 5 5 HELIX 22 AC4 ASN D 229 GLN D 234 5 6 HELIX 23 AC5 ASP D 239 ARG D 252 1 14 HELIX 24 AC6 SER D 297 GLU D 309 1 13 SHEET 1 AA1 5 ILE A 207 ALA A 210 0 SHEET 2 AA1 5 ASN A 194 SER A 198 -1 N ILE A 197 O VAL A 208 SHEET 3 AA1 5 VAL A 286 VAL A 296 -1 O GLY A 291 N VAL A 196 SHEET 4 AA1 5 THR A 269 ARG A 280 -1 N LEU A 279 O ASN A 288 SHEET 5 AA1 5 THR A 256 TYR A 263 -1 N THR A 256 O ILE A 276 SHEET 1 AA2 5 ILE B 207 ALA B 210 0 SHEET 2 AA2 5 ASN B 194 SER B 198 -1 N ILE B 197 O VAL B 208 SHEET 3 AA2 5 VAL B 286 VAL B 296 -1 O GLY B 291 N VAL B 196 SHEET 4 AA2 5 THR B 269 ARG B 280 -1 N LEU B 279 O ASN B 288 SHEET 5 AA2 5 THR B 256 TYR B 263 -1 N THR B 256 O ILE B 276 SHEET 1 AA3 5 ILE C 207 ALA C 210 0 SHEET 2 AA3 5 PHE C 195 SER C 198 -1 N ILE C 197 O VAL C 208 SHEET 3 AA3 5 VAL C 286 VAL C 296 -1 O GLY C 291 N VAL C 196 SHEET 4 AA3 5 THR C 269 ARG C 280 -1 N LEU C 279 O ASN C 288 SHEET 5 AA3 5 THR C 256 TYR C 263 -1 N ASN C 262 O PHE C 270 SHEET 1 AA4 5 ILE D 207 ALA D 210 0 SHEET 2 AA4 5 PHE D 195 SER D 198 -1 N ILE D 197 O VAL D 208 SHEET 3 AA4 5 VAL D 286 VAL D 296 -1 O GLY D 291 N VAL D 196 SHEET 4 AA4 5 THR D 269 ARG D 280 -1 N LEU D 279 O ASN D 288 SHEET 5 AA4 5 THR D 256 TYR D 263 -1 N ASN D 262 O PHE D 270 SITE 1 AC1 20 VAL A 196 ASN A 205 ASN A 229 CYS A 230 SITE 2 AC1 20 ARG A 231 LEU A 233 GLN A 234 VAL A 243 SITE 3 AC1 20 ARG A 247 LEU A 260 ASN A 262 ASN A 272 SITE 4 AC1 20 LEU A 274 GLY A 291 GLN A 293 HOH A 525 SITE 5 AC1 20 HOH A 529 HOH A 536 HOH A 584 HOH A 585 SITE 1 AC2 22 VAL B 196 ASN B 205 ASN B 229 CYS B 230 SITE 2 AC2 22 ARG B 231 LEU B 233 GLN B 234 VAL B 243 SITE 3 AC2 22 ARG B 247 LEU B 260 ASN B 262 ASN B 272 SITE 4 AC2 22 LEU B 274 ILE B 276 GLY B 291 GLN B 293 SITE 5 AC2 22 HOH B 511 HOH B 517 HOH B 520 HOH B 561 SITE 6 AC2 22 HOH B 578 HOH B 588 SITE 1 AC3 23 VAL C 196 SER C 198 ASN C 205 ASN C 229 SITE 2 AC3 23 CYS C 230 ARG C 231 LEU C 233 GLN C 234 SITE 3 AC3 23 VAL C 243 ARG C 247 LEU C 260 ASN C 262 SITE 4 AC3 23 ASN C 272 LEU C 274 ILE C 276 TYR C 289 SITE 5 AC3 23 GLY C 291 GLN C 293 HOH C 508 HOH C 534 SITE 6 AC3 23 HOH C 551 HOH C 568 HOH C 592 SITE 1 AC4 22 VAL D 196 ASN D 205 ASN D 229 CYS D 230 SITE 2 AC4 22 ARG D 231 LEU D 233 GLN D 234 VAL D 243 SITE 3 AC4 22 ARG D 247 LEU D 260 ASN D 262 ASN D 272 SITE 4 AC4 22 LEU D 274 ILE D 276 TYR D 289 GLY D 291 SITE 5 AC4 22 GLN D 293 HOH D 505 HOH D 545 HOH D 565 SITE 6 AC4 22 HOH D 576 HOH D 597 CRYST1 150.180 91.510 99.840 90.00 131.34 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006659 0.000000 0.005858 0.00000 SCALE2 0.000000 0.010928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013340 0.00000