HEADER TRANSCRIPTION 31-OCT-18 6I23 TITLE FLAVIN ANALOGUE SHEDS LIGHT ON LIGHT-OXYGEN-VOLTAGE DOMAIN MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUREOCHROME1-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AUREOCHROME1-LIKE PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCHROMONAS DANICA; SOURCE 3 ORGANISM_TAXID: 2986; SOURCE 4 GENE: ODAUREO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: OCHROMONAS DANICA; SOURCE 9 ORGANISM_TAXID: 2986; SOURCE 10 GENE: ODAUREO1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LOV DOMAIN, FMN, DARK GROWN, FLUORESCENCE, LIGHT SENSING, KEYWDS 2 TRANSCRIPTION FACTOR PAS DOMAIN, OCHRONOMAS DANICA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,M.E.KALVAITIS,R.K.ALLEMANN,R.J.MART,L.A.JOHNSON REVDAT 3 24-JAN-24 6I23 1 REMARK REVDAT 2 19-JUN-19 6I23 1 JRNL REVDAT 1 29-MAY-19 6I23 0 JRNL AUTH M.E.KALVAITIS,L.A.JOHNSON,R.J.MART,P.RIZKALLAH,R.K.ALLEMANN JRNL TITL A NONCANONICAL CHROMOPHORE REVEALS STRUCTURAL REARRANGEMENTS JRNL TITL 2 OF THE LIGHT-OXYGEN-VOLTAGE DOMAIN UPON PHOTOACTIVATION. JRNL REF BIOCHEMISTRY V. 58 2608 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31082213 JRNL DOI 10.1021/ACS.BIOCHEM.9B00255 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD 9 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.37000 REMARK 3 B22 (A**2) : -2.37000 REMARK 3 B33 (A**2) : 7.70000 REMARK 3 B12 (A**2) : -1.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2204 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2027 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2986 ; 1.717 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4707 ; 1.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 6.773 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;35.111 ;24.851 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 358 ;16.403 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.529 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2424 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 435 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1059 ; 1.536 ; 3.135 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1056 ; 1.515 ; 3.129 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1321 ; 2.403 ; 4.683 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1322 ; 2.403 ; 4.686 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1145 ; 1.876 ; 3.446 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1146 ; 1.876 ; 3.447 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1663 ; 3.020 ; 5.030 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2665 ; 5.846 ;37.114 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2666 ; 5.846 ;37.131 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): -35.1145 34.5844 -2.7867 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.0868 REMARK 3 T33: 0.0508 T12: -0.0575 REMARK 3 T13: -0.0202 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 4.0898 L22: 4.5984 REMARK 3 L33: 2.1081 L12: -0.2306 REMARK 3 L13: -0.6320 L23: 1.3912 REMARK 3 S TENSOR REMARK 3 S11: -0.1096 S12: 0.4070 S13: -0.2682 REMARK 3 S21: -0.3372 S22: 0.2111 S23: 0.1313 REMARK 3 S31: 0.1305 S32: -0.1662 S33: -0.1015 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 178 B 309 REMARK 3 ORIGIN FOR THE GROUP (A): -46.7699 12.4396 3.7788 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.0430 REMARK 3 T33: 0.0613 T12: -0.0234 REMARK 3 T13: 0.0169 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 3.2046 L22: 4.7316 REMARK 3 L33: 2.2727 L12: 0.1565 REMARK 3 L13: 0.4937 L23: 1.1115 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: -0.2868 S13: 0.4205 REMARK 3 S21: 0.5425 S22: -0.0438 S23: 0.1676 REMARK 3 S31: -0.0348 S32: -0.0022 S33: 0.0515 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200011327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 - 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30564 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 90.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 1.45100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5A8B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CITRATE, 0.3 M NH4 CHLORIDE, REMARK 280 15-20% PEG 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.67000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.34000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.34000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.67000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 310 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 556 O HOH B 556 5554 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 266 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 180 11.62 59.54 REMARK 500 SER A 223 1.45 -66.16 REMARK 500 MET B 180 -4.90 -58.99 REMARK 500 ASN B 307 49.30 -84.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9O9 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9O9 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 407 DBREF 6I23 A 181 307 UNP C5NSW6 C5NSW6_OCHDN 181 307 DBREF 6I23 B 181 310 UNP C5NSW6 C5NSW6_OCHDN 181 310 SEQADV 6I23 GLY A 178 UNP C5NSW6 EXPRESSION TAG SEQADV 6I23 ALA A 179 UNP C5NSW6 EXPRESSION TAG SEQADV 6I23 MET A 180 UNP C5NSW6 EXPRESSION TAG SEQADV 6I23 GLY B 178 UNP C5NSW6 EXPRESSION TAG SEQADV 6I23 ALA B 179 UNP C5NSW6 EXPRESSION TAG SEQADV 6I23 MET B 180 UNP C5NSW6 EXPRESSION TAG SEQRES 1 A 130 GLY ALA MET ASP TYR SER LEU VAL LYS ALA LEU GLN THR SEQRES 2 A 130 ALA GLN GLN ASN PHE VAL ILE SER ASP PRO SER ILE PRO SEQRES 3 A 130 ASP ASN PRO ILE VAL TYR ALA SER GLN GLY PHE LEU THR SEQRES 4 A 130 LEU THR GLY TYR ALA LEU SER GLU VAL LEU GLY ARG ASN SEQRES 5 A 130 CYS ARG PHE LEU GLN GLY PRO GLU THR ASP PRO LYS ALA SEQRES 6 A 130 VAL GLU LYS VAL ARG LYS GLY LEU GLU ARG GLY GLU ASP SEQRES 7 A 130 THR THR VAL VAL LEU LEU ASN TYR ARG LYS ASP GLY SER SEQRES 8 A 130 THR PHE TRP ASN GLN LEU PHE ILE ALA ALA LEU ARG ASP SEQRES 9 A 130 GLY GLU GLY ASN VAL VAL ASN TYR LEU GLY VAL GLN CYS SEQRES 10 A 130 LYS VAL SER GLU ASP TYR ALA LYS ALA PHE LEU LYS ASN SEQRES 1 B 133 GLY ALA MET ASP TYR SER LEU VAL LYS ALA LEU GLN THR SEQRES 2 B 133 ALA GLN GLN ASN PHE VAL ILE SER ASP PRO SER ILE PRO SEQRES 3 B 133 ASP ASN PRO ILE VAL TYR ALA SER GLN GLY PHE LEU THR SEQRES 4 B 133 LEU THR GLY TYR ALA LEU SER GLU VAL LEU GLY ARG ASN SEQRES 5 B 133 CYS ARG PHE LEU GLN GLY PRO GLU THR ASP PRO LYS ALA SEQRES 6 B 133 VAL GLU LYS VAL ARG LYS GLY LEU GLU ARG GLY GLU ASP SEQRES 7 B 133 THR THR VAL VAL LEU LEU ASN TYR ARG LYS ASP GLY SER SEQRES 8 B 133 THR PHE TRP ASN GLN LEU PHE ILE ALA ALA LEU ARG ASP SEQRES 9 B 133 GLY GLU GLY ASN VAL VAL ASN TYR LEU GLY VAL GLN CYS SEQRES 10 B 133 LYS VAL SER GLU ASP TYR ALA LYS ALA PHE LEU LYS ASN SEQRES 11 B 133 GLU GLU ASN HET 9O9 A 401 31 HET CL A 402 1 HET ACT A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET 9O9 B 401 31 HET CL B 402 1 HET MES B 403 12 HET ACT B 404 4 HET EDO B 405 4 HET EDO B 406 4 HET EDO B 407 4 HETNAM 9O9 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4- HETNAM 2 9O9 DIHYDROPYRIMIDO[4,5-B]QUINOLIN-10(2H)-YL)-5-O- HETNAM 3 9O9 PHOSPHONO-D-RIBITOL HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 9O9 2(C18 H22 N3 O9 P) FORMUL 4 CL 2(CL 1-) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 6 EDO 6(C2 H6 O2) FORMUL 11 MES C6 H13 N O4 S FORMUL 16 HOH *127(H2 O) HELIX 1 AA1 TYR A 182 ALA A 191 1 10 HELIX 2 AA2 SER A 211 GLY A 219 1 9 HELIX 3 AA3 ALA A 221 LEU A 226 1 6 HELIX 4 AA4 ASN A 229 GLN A 234 5 6 HELIX 5 AA5 ASP A 239 ARG A 252 1 14 HELIX 6 AA6 SER A 297 LYS A 306 1 10 HELIX 7 AA7 GLY B 178 ASP B 181 5 4 HELIX 8 AA8 TYR B 182 ALA B 191 1 10 HELIX 9 AA9 SER B 211 GLY B 219 1 9 HELIX 10 AB1 ALA B 221 VAL B 225 5 5 HELIX 11 AB2 ASN B 229 GLN B 234 5 6 HELIX 12 AB3 ASP B 239 ARG B 252 1 14 HELIX 13 AB4 SER B 297 ASN B 307 1 11 SHEET 1 AA1 5 ILE A 207 ALA A 210 0 SHEET 2 AA1 5 ASN A 194 SER A 198 -1 N ILE A 197 O VAL A 208 SHEET 3 AA1 5 VAL A 286 VAL A 296 -1 O GLY A 291 N VAL A 196 SHEET 4 AA1 5 THR A 269 ARG A 280 -1 N LEU A 279 O ASN A 288 SHEET 5 AA1 5 THR A 256 TYR A 263 -1 N VAL A 258 O LEU A 274 SHEET 1 AA2 5 ILE B 207 ALA B 210 0 SHEET 2 AA2 5 ASN B 194 SER B 198 -1 N ILE B 197 O VAL B 208 SHEET 3 AA2 5 VAL B 286 VAL B 296 -1 O GLY B 291 N VAL B 196 SHEET 4 AA2 5 THR B 269 ARG B 280 -1 N GLN B 273 O CYS B 294 SHEET 5 AA2 5 THR B 256 TYR B 263 -1 N VAL B 258 O LEU B 274 SITE 1 AC1 23 VAL A 196 SER A 198 ASN A 205 ASN A 229 SITE 2 AC1 23 CYS A 230 ARG A 231 LEU A 233 GLN A 234 SITE 3 AC1 23 VAL A 243 ARG A 247 LEU A 250 LEU A 260 SITE 4 AC1 23 ASN A 262 ASN A 272 LEU A 274 ILE A 276 SITE 5 AC1 23 TYR A 289 LEU A 290 GLY A 291 GLN A 293 SITE 6 AC1 23 CL A 402 HOH A 528 HOH A 541 SITE 1 AC2 3 ASN A 205 ASN A 229 9O9 A 401 SITE 1 AC3 6 TYR A 220 GLU A 224 ARG A 228 PHE A 232 SITE 2 AC3 6 HOH A 508 ARG B 228 SITE 1 AC4 4 TYR A 209 ALA A 210 LEU A 222 ACT B 404 SITE 1 AC5 5 ALA A 278 LEU A 279 ARG A 280 ALA B 278 SITE 2 AC5 5 ARG B 280 SITE 1 AC6 7 ASP A 199 VAL A 208 ASN A 288 GLY B 178 SITE 2 AC6 7 VAL B 208 TYR B 209 EDO B 407 SITE 1 AC7 20 VAL B 196 ASN B 205 ASN B 229 CYS B 230 SITE 2 AC7 20 ARG B 231 LEU B 233 GLN B 234 ARG B 247 SITE 3 AC7 20 LEU B 250 LEU B 260 ASN B 262 ASN B 272 SITE 4 AC7 20 LEU B 274 TYR B 289 LEU B 290 GLY B 291 SITE 5 AC7 20 GLN B 293 CL B 402 HOH B 508 HOH B 535 SITE 1 AC8 4 ASN B 205 ASN B 229 9O9 B 401 HOH B 551 SITE 1 AC9 11 ARG A 231 PHE A 232 GLN A 234 GLY A 235 SITE 2 AC9 11 TYR A 263 ARG B 231 PHE B 232 GLN B 234 SITE 3 AC9 11 HOH B 501 HOH B 506 HOH B 516 SITE 1 AD1 7 VAL A 208 EDO A 404 ILE B 202 ILE B 207 SITE 2 AD1 7 VAL B 208 GLY B 227 HOH B 503 SITE 1 AD2 3 GLN B 192 ASN B 194 HOH B 550 SITE 1 AD3 4 GLN B 212 LEU B 215 THR B 216 HOH B 519 SITE 1 AD4 6 ALA A 179 EDO A 406 GLY B 178 ALA B 179 SITE 2 AD4 6 VAL B 208 ASN B 288 CRYST1 104.563 104.563 68.010 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009564 0.005522 0.000000 0.00000 SCALE2 0.000000 0.011043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014704 0.00000