HEADER LIGASE 01-NOV-18 6I29 TITLE X-RAY STRUCTURE OF THE P53-MDM2 INHIBITOR NMI801 BOUND TO HDM2 AT 2.1A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, P53 BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-DERIVED VECTOR KEYWDS LEAD OPTIMIZATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KALLEN REVDAT 2 24-JAN-24 6I29 1 REMARK REVDAT 1 20-NOV-19 6I29 0 JRNL AUTH J.ORNSTEIN,Y.IWAMOTO,M.PRYTYSKACH,M.MILLER,J.KALLEN, JRNL AUTH 2 S.FERRETTI,P.HOLZER,W.FORRESTER,R.WEISSLEDER,G.LAHAV JRNL TITL P53 DYNAMICS VARY BETWEEN TISSUES AND ARE LINKED WITH JRNL TITL 2 RADIATION SENSITIVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 8869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 466 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.125 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6I29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00070 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9337 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 36.50 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 38.40 REMARK 200 R MERGE FOR SHELL (I) : 0.36100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1M (NH4)SO4, 0.1M CITRATE PH 3.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.94150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.94150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.94150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.94150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 60.94150 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 60.94150 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 60.94150 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 60.94150 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 60.94150 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 60.94150 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 60.94150 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 60.94150 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 91.41225 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 30.47075 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 91.41225 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 91.41225 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 30.47075 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 91.41225 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 30.47075 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 30.47075 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 30.47075 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 30.47075 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 91.41225 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 30.47075 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 91.41225 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 91.41225 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 30.47075 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 91.41225 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 91.41225 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 30.47075 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 30.47075 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 30.47075 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 30.47075 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 91.41225 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 91.41225 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 91.41225 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 60.94150 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 60.94150 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 60.94150 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 60.94150 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 60.94150 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 60.94150 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 60.94150 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 60.94150 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 60.94150 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 60.94150 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 60.94150 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 60.94150 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 60.94150 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 30.47075 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 91.41225 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 30.47075 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 30.47075 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 91.41225 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 30.47075 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 91.41225 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 91.41225 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 91.41225 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 91.41225 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 30.47075 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 91.41225 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 30.47075 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 30.47075 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 91.41225 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 30.47075 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 30.47075 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 91.41225 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 91.41225 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 91.41225 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 30.47075 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 91.41225 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 30.47075 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 91.41225 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 30.47075 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 30.47075 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 30.47075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 60.94150 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 312 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 315 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 326 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 330 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 GLN A 18 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H0W A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DIJ RELATED DB: PDB DBREF 6I29 A 17 111 UNP Q00987 MDM2_HUMAN 23 117 SEQADV 6I29 GLY A 16 UNP Q00987 EXPRESSION TAG SEQRES 1 A 96 GLY SER GLN ILE PRO ALA SER GLU GLN GLU THR LEU VAL SEQRES 2 A 96 ARG PRO LYS PRO LEU LEU LEU LYS LEU LEU LYS SER VAL SEQRES 3 A 96 GLY ALA GLN LYS ASP THR TYR THR MET LYS GLU VAL LEU SEQRES 4 A 96 PHE TYR LEU GLY GLN TYR ILE MET THR LYS ARG LEU TYR SEQRES 5 A 96 ASP GLU LYS GLN GLN HIS ILE VAL TYR CYS SER ASN ASP SEQRES 6 A 96 LEU LEU GLY ASP LEU PHE GLY VAL PRO SER PHE SER VAL SEQRES 7 A 96 LYS GLU HIS ARG LYS ILE TYR THR MET ILE TYR ARG ASN SEQRES 8 A 96 LEU VAL VAL VAL ASN HET H0W A 201 52 HETNAM H0W 6-CHLORANYL-3-[3-[(1~{S})-1-(4-CHLOROPHENYL)ETHYL]-5- HETNAM 2 H0W PHENYL-IMIDAZOL-4-YL]-~{N}-[2-[4-(2-OXIDANYLIDENE-1,3- HETNAM 3 H0W OXAZINAN-3-YL)PIPERIDIN-1-YL]PYRIDIN-3-YL]-1~{H}- HETNAM 4 H0W INDOLE-2-CARBOXAMIDE FORMUL 2 H0W C40 H37 CL2 N7 O3 FORMUL 3 HOH *45(H2 O) HELIX 1 AA1 PRO A 20 GLN A 24 5 5 HELIX 2 AA2 LYS A 31 SER A 40 1 10 HELIX 3 AA3 THR A 49 LYS A 64 1 16 HELIX 4 AA4 ASP A 80 GLY A 87 1 8 HELIX 5 AA5 GLU A 95 ARG A 105 1 11 SHEET 1 AA1 2 ILE A 74 TYR A 76 0 SHEET 2 AA1 2 SER A 90 SER A 92 -1 O PHE A 91 N VAL A 75 SITE 1 AC1 15 GLN A 44 LYS A 51 GLU A 52 LEU A 54 SITE 2 AC1 15 PHE A 55 TYR A 56 LEU A 57 GLY A 58 SITE 3 AC1 15 ILE A 61 MET A 62 GLN A 72 VAL A 93 SITE 4 AC1 15 HIS A 96 ILE A 99 HOH A 319 CRYST1 121.883 121.883 121.883 90.00 90.00 90.00 I 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008205 0.00000