HEADER RNA BINDING PROTEIN 07-NOV-18 6I3R TITLE STRUCTURE, DYNAMICS AND ROX2-LNCRNA BINDING OF TANDEM DOUBLE-STRANDED TITLE 2 RNA BINDING DOMAINS DSRBD1/2 OF DROSOPHILA HELICASE MLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOSAGE COMPENSATION REGULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT RNA HELICASE MLE,PROTEIN MALE-LESS,PROTEIN COMPND 5 MALELESS,PROTEIN NO ACTION POTENTIAL; COMPND 6 EC: 3.6.4.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: MLE, NAP, CG11680; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICASE, DSRBD, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR P.K.A.JAGTAP,S.V.BUELOW,P.MASIEWICZ,B.SIMON,J.HENNIG REVDAT 5 14-JUN-23 6I3R 1 REMARK REVDAT 4 03-JUL-19 6I3R 1 JRNL REMARK REVDAT 3 08-MAY-19 6I3R 1 REMARK REVDAT 2 06-MAR-19 6I3R 1 JRNL REVDAT 1 20-FEB-19 6I3R 0 JRNL AUTH P.K.ANKUSH JAGTAP,M.MULLER,P.MASIEWICZ,S.VON BULOW, JRNL AUTH 2 N.M.HOLLMANN,P.C.CHEN,B.SIMON,A.W.THOMAE,P.B.BECKER,J.HENNIG JRNL TITL STRUCTURE, DYNAMICS AND ROX2-LNCRNA BINDING OF TANDEM JRNL TITL 2 DOUBLE-STRANDED RNA BINDING DOMAINS DSRBD1,2 OF DROSOPHILA JRNL TITL 3 HELICASE MALELESS. JRNL REF NUCLEIC ACIDS RES. V. 47 4319 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 30805612 JRNL DOI 10.1093/NAR/GKZ125 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012773. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] MLE REMARK 210 DSRBD1,2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HCCH-TOCSY; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D H(CCO)NH; REMARK 210 3D HNCO; 3D HBHA(CO)NH; 3D 1H- REMARK 210 15N NOESY; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD12 ILE A 142 HB ILE A 145 1.25 REMARK 500 HD11 LEU A 70 HB2 LEU A 76 1.29 REMARK 500 OD2 ASP A 4 HZ2 LYS A 60 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 32 -129.74 -165.49 REMARK 500 1 PRO A 43 91.19 4.20 REMARK 500 1 GLN A 107 30.86 -96.15 REMARK 500 1 ASN A 137 -70.27 -55.41 REMARK 500 1 ARG A 138 64.85 28.05 REMARK 500 1 ALA A 156 -154.38 -171.96 REMARK 500 1 ILE A 169 -72.49 -70.97 REMARK 500 1 PRO A 196 -152.68 -70.11 REMARK 500 1 ALA A 199 41.91 -143.22 REMARK 500 1 ARG A 200 101.04 -59.40 REMARK 500 1 VAL A 210 107.45 -46.89 REMARK 500 1 ASN A 214 73.66 46.63 REMARK 500 1 ASN A 245 36.97 73.62 REMARK 500 1 ILE A 247 139.29 179.85 REMARK 500 2 ALA A 2 77.14 56.64 REMARK 500 2 ARG A 32 -154.92 -159.21 REMARK 500 2 ASN A 44 5.89 -60.92 REMARK 500 2 PRO A 82 103.09 -58.05 REMARK 500 2 ASP A 84 93.05 -67.04 REMARK 500 2 GLN A 107 31.50 -92.72 REMARK 500 2 TYR A 125 68.73 -114.61 REMARK 500 2 ARG A 149 -9.93 -58.52 REMARK 500 2 ALA A 156 -149.88 -79.30 REMARK 500 2 THR A 168 99.93 -164.03 REMARK 500 2 PRO A 196 -85.42 -55.84 REMARK 500 2 ARG A 200 96.17 -58.16 REMARK 500 2 PRO A 211 -163.45 -73.31 REMARK 500 2 LYS A 226 -70.01 -42.47 REMARK 500 3 ARG A 32 131.66 -170.29 REMARK 500 3 GLU A 42 173.24 -47.30 REMARK 500 3 PRO A 43 103.53 5.63 REMARK 500 3 ALA A 156 174.09 68.91 REMARK 500 3 PRO A 196 -89.61 -60.63 REMARK 500 3 ARG A 200 96.61 -58.62 REMARK 500 4 ARG A 32 132.50 167.08 REMARK 500 4 GLU A 42 174.53 -48.44 REMARK 500 4 PRO A 43 82.76 11.97 REMARK 500 4 ASP A 84 97.37 -56.72 REMARK 500 4 ASP A 120 74.19 -103.36 REMARK 500 4 VAL A 141 64.88 -114.47 REMARK 500 4 GLN A 148 99.50 -65.88 REMARK 500 4 GLU A 155 -69.70 -98.26 REMARK 500 4 PRO A 196 -162.32 -64.62 REMARK 500 4 ARG A 200 100.43 -55.03 REMARK 500 4 VAL A 210 109.13 -49.02 REMARK 500 5 ARG A 32 160.23 177.25 REMARK 500 5 GLU A 42 175.72 -49.39 REMARK 500 5 PRO A 43 90.53 10.28 REMARK 500 5 THR A 94 -52.62 -121.19 REMARK 500 5 ASP A 120 43.22 -79.08 REMARK 500 REMARK 500 THIS ENTRY HAS 123 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 42 PRO A 43 1 -148.59 REMARK 500 GLU A 42 PRO A 43 2 136.47 REMARK 500 GLU A 42 PRO A 43 4 -141.76 REMARK 500 GLU A 42 PRO A 43 5 -144.95 REMARK 500 GLU A 42 PRO A 43 6 143.79 REMARK 500 GLU A 42 PRO A 43 7 137.73 REMARK 500 GLU A 42 PRO A 43 8 -148.58 REMARK 500 GLU A 42 PRO A 43 9 133.53 REMARK 500 GLU A 42 PRO A 43 10 124.28 REMARK 500 PRO A 43 ASN A 44 10 -148.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34326 RELATED DB: BMRB REMARK 900 STRUCTURE, DYNAMICS AND ROX2-LNCRNA BINDING OF TANDEM DOUBLE- REMARK 900 STRANDED RNA BINDING DOMAINS DSRBD1/2 OF DROSOPHILA HELICASE MLE DBREF 6I3R A 3 259 UNP P24785 MLE_DROME 1 257 SEQADV 6I3R GLY A 1 UNP P24785 EXPRESSION TAG SEQADV 6I3R ALA A 2 UNP P24785 EXPRESSION TAG SEQRES 1 A 259 GLY ALA MET ASP ILE LYS SER PHE LEU TYR GLN PHE CYS SEQRES 2 A 259 ALA LYS SER GLN ILE GLU PRO LYS PHE ASP ILE ARG GLN SEQRES 3 A 259 THR GLY PRO LYS ASN ARG GLN ARG PHE LEU CYS GLU VAL SEQRES 4 A 259 ARG VAL GLU PRO ASN THR TYR ILE GLY VAL GLY ASN SER SEQRES 5 A 259 THR ASN LYS LYS ASP ALA GLU LYS ASN ALA CYS ARG ASP SEQRES 6 A 259 PHE VAL ASN TYR LEU VAL ARG VAL GLY LYS LEU ASN THR SEQRES 7 A 259 ASN ASP VAL PRO ALA ASP ALA GLY ALA SER GLY GLY GLY SEQRES 8 A 259 PRO ARG THR GLY LEU GLU GLY ALA GLY MET ALA GLY GLY SEQRES 9 A 259 SER GLY GLN GLN LYS ARG VAL PHE ASP GLY GLN SER GLY SEQRES 10 A 259 PRO GLN ASP LEU GLY GLU ALA TYR ARG PRO LEU ASN HIS SEQRES 11 A 259 ASP GLY GLY ASP GLY GLY ASN ARG TYR SER VAL ILE ASP SEQRES 12 A 259 ARG ILE GLN GLU GLN ARG ASP MET ASN GLU ALA GLU ALA SEQRES 13 A 259 PHE ASP VAL ASN ALA ALA ILE HIS GLY ASN TRP THR ILE SEQRES 14 A 259 GLU ASN ALA LYS GLU ARG LEU ASN ILE TYR LYS GLN THR SEQRES 15 A 259 ASN ASN ILE ARG ASP ASP TYR LYS TYR THR PRO VAL GLY SEQRES 16 A 259 PRO GLU HIS ALA ARG SER PHE LEU ALA GLU LEU SER ILE SEQRES 17 A 259 TYR VAL PRO ALA LEU ASN ARG THR VAL THR ALA ARG GLU SEQRES 18 A 259 SER GLY SER ASN LYS LYS SER ALA SER LYS SER CYS ALA SEQRES 19 A 259 LEU SER LEU VAL ARG GLN LEU PHE HIS LEU ASN VAL ILE SEQRES 20 A 259 GLU PRO PHE SER GLY THR LEU LYS LYS LYS LYS ASP HELIX 1 AA1 ASP A 4 LYS A 15 1 12 HELIX 2 AA2 ASN A 54 VAL A 73 1 20 HELIX 3 AA3 ASP A 120 TYR A 125 5 6 HELIX 4 AA4 ASP A 143 GLN A 148 1 6 HELIX 5 AA5 GLN A 148 ALA A 156 1 9 HELIX 6 AA6 ASP A 158 ILE A 163 1 6 HELIX 7 AA7 GLU A 170 ASN A 183 1 14 HELIX 8 AA8 ASN A 225 PHE A 242 1 18 HELIX 9 AA9 HIS A 243 ASN A 245 5 3 SHEET 1 AA1 3 LYS A 21 GLN A 26 0 SHEET 2 AA1 3 PHE A 35 ARG A 40 -1 O ARG A 40 N LYS A 21 SHEET 3 AA1 3 GLY A 48 SER A 52 -1 O GLY A 50 N CYS A 37 SHEET 1 AA2 3 LYS A 190 PRO A 193 0 SHEET 2 AA2 3 PHE A 202 GLU A 205 -1 O LEU A 203 N THR A 192 SHEET 3 AA2 3 GLU A 221 GLY A 223 -1 O GLU A 221 N ALA A 204 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1