HEADER BLOOD CLOTTING 09-NOV-18 6I44 TITLE ALLOSTERIC ACTIVATION OF HUMAN PREKALLIKREIN BY APPLE DOMAIN DISC TITLE 2 ROTATION CAVEAT 6I44 NAG B 2 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMA KALLIKREIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FLETCHER FACTOR,KININOGENIN,PLASMA PREKALLIKREIN,PKK; COMPND 5 EC: 3.4.21.34; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLKB1, KLK3; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227 KEYWDS PREKALLIKREIN, ACTIVATION, HIGH MOLECULAR WEIGHT KININOGEN, BLOOD KEYWDS 2 CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR C.LI,M.PATHAK,K.MACRAE,I.DREVENY,J.EMSLEY REVDAT 6 24-JAN-24 6I44 1 REMARK REVDAT 5 04-AUG-21 6I44 1 COMPND HET HETSYN FORMUL REVDAT 5 2 1 LINK ATOM REVDAT 4 29-JUL-20 6I44 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 08-JUL-20 6I44 1 REMARK REVDAT 2 08-MAY-19 6I44 1 JRNL REVDAT 1 06-MAR-19 6I44 0 JRNL AUTH C.LI,K.M.VOOS,M.PATHAK,G.HALL,K.R.MCCRAE,I.DREVENY,R.LI, JRNL AUTH 2 J.EMSLEY JRNL TITL PLASMA KALLIKREIN STRUCTURE REVEALS APPLE DOMAIN DISC JRNL TITL 2 ROTATED CONFORMATION COMPARED TO FACTOR XI. JRNL REF J.THROMB.HAEMOST. V. 17 759 2019 JRNL REFN ESSN 1538-7836 JRNL PMID 30801944 JRNL DOI 10.1111/JTH.14418 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.PAPAGRIGORIOU,P.A.MCEWAN,P.N.WALSH,J.EMSLEY REMARK 1 TITL CRYSTAL STRUCTURE OF THE FACTOR XI ZYMOGEN REVEALS A PATHWAY REMARK 1 TITL 2 FOR TRANSACTIVATION. REMARK 1 REF NAT. STRUCT. MOL. BIOL. V. 13 557 2006 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 16699514 REMARK 1 DOI 10.1038/NSMB1095 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 134463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 7196 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9748 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 475 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 167 REMARK 3 SOLVENT ATOMS : 637 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.958 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5097 ; 0.018 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4628 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6919 ; 2.038 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10796 ; 1.551 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 653 ; 6.312 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;37.039 ;22.521 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 848 ;14.050 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.734 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 670 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5678 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1077 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2454 ; 1.922 ; 1.679 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2453 ; 1.922 ; 1.679 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3066 ; 2.750 ; 2.501 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3067 ; 2.750 ; 2.501 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2643 ; 2.844 ; 2.029 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2642 ; 2.836 ; 2.029 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3821 ; 4.076 ; 2.910 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5897 ; 5.924 ;21.786 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5698 ; 5.567 ;20.890 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 129.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2F83 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CARBOXYLIC ACID, 0.1M HEPES/MOPS REMARK 280 PH 7.5, 12.5%MPD, 12.5%PEG1000, 12.5%PEG3350, EVAPORATION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.30550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.81650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.30550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.81650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 359 REMARK 465 ASP A 360 REMARK 465 ASN A 361 REMARK 465 SER A 362 REMARK 465 THR A 366 REMARK 465 LYS A 367 REMARK 465 THR A 368 REMARK 465 SER A 369 REMARK 465 THR A 370 REMARK 465 ARG A 371 REMARK 465 LYS A 488 REMARK 465 GLY A 489 REMARK 465 ASP A 490 REMARK 465 THR A 491 REMARK 465 SER A 492 REMARK 465 THR A 493 REMARK 465 GLY A 611 REMARK 465 LYS A 612 REMARK 465 ALA A 613 REMARK 465 GLN A 614 REMARK 465 MET A 615 REMARK 465 GLN A 616 REMARK 465 SER A 617 REMARK 465 PRO A 618 REMARK 465 ALA A 619 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 26 CD REMARK 480 MET A 30 CE REMARK 480 GLU A 53 CD OE1 OE2 REMARK 480 LYS A 440 CG CD CE REMARK 480 GLU A 528 CD REMARK 480 ARG A 541 CZ NH1 NH2 REMARK 480 GLU A 549 CG REMARK 480 ARG A 586 CZ REMARK 480 GLN A 607 CG NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 132 CA SER A 132 CB -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 193 -86.77 -117.77 REMARK 500 ASP A 194 -134.25 47.71 REMARK 500 ARG A 267 -48.29 79.14 REMARK 500 PRO A 272 42.35 -84.43 REMARK 500 LEU A 393 -89.66 -109.58 REMARK 500 SER A 459 -10.16 83.27 REMARK 500 ALA A 509 67.75 -107.22 REMARK 500 SER A 578 -67.36 -125.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 706 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 210 OG1 REMARK 620 2 HOH A1013 O 66.0 REMARK 620 N 1 DBREF 6I44 A 1 619 UNP P03952 KLKB1_HUMAN 20 638 SEQADV 6I44 ARG A -7 UNP P03952 EXPRESSION TAG SEQADV 6I44 SER A -6 UNP P03952 EXPRESSION TAG SEQADV 6I44 HIS A -5 UNP P03952 EXPRESSION TAG SEQADV 6I44 HIS A -4 UNP P03952 EXPRESSION TAG SEQADV 6I44 HIS A -3 UNP P03952 EXPRESSION TAG SEQADV 6I44 HIS A -2 UNP P03952 EXPRESSION TAG SEQADV 6I44 HIS A -1 UNP P03952 EXPRESSION TAG SEQADV 6I44 HIS A 0 UNP P03952 EXPRESSION TAG SEQADV 6I44 ALA A 323 UNP P03952 GLU 342 CONFLICT SEQADV 6I44 ALA A 325 UNP P03952 LYS 344 CONFLICT SEQADV 6I44 GLN A 377 UNP P03952 ASN 396 CONFLICT SEQADV 6I44 GLN A 434 UNP P03952 ASN 453 CONFLICT SEQADV 6I44 GLN A 475 UNP P03952 ASN 494 CONFLICT SEQADV 6I44 ALA A 507 UNP P03952 LYS 526 CONFLICT SEQADV 6I44 ALA A 509 UNP P03952 LYS 528 CONFLICT SEQADV 6I44 ALA A 559 UNP P03952 SER 578 CONFLICT SEQRES 1 A 627 ARG SER HIS HIS HIS HIS HIS HIS GLY CYS LEU THR GLN SEQRES 2 A 627 LEU TYR GLU ASN ALA PHE PHE ARG GLY GLY ASP VAL ALA SEQRES 3 A 627 SER MET TYR THR PRO ASN ALA GLN TYR CYS GLN MET ARG SEQRES 4 A 627 CYS THR PHE HIS PRO ARG CYS LEU LEU PHE SER PHE LEU SEQRES 5 A 627 PRO ALA SER SER ILE ASN ASP MET GLU LYS ARG PHE GLY SEQRES 6 A 627 CYS PHE LEU LYS ASP SER VAL THR GLY THR LEU PRO LYS SEQRES 7 A 627 VAL HIS ARG THR GLY ALA VAL SER GLY HIS SER LEU LYS SEQRES 8 A 627 GLN CYS GLY HIS GLN ILE SER ALA CYS HIS ARG ASP ILE SEQRES 9 A 627 TYR LYS GLY VAL ASP MET ARG GLY VAL ASN PHE ASN VAL SEQRES 10 A 627 SER LYS VAL SER SER VAL GLU GLU CYS GLN LYS ARG CYS SEQRES 11 A 627 THR ASN ASN ILE ARG CYS GLN PHE PHE SER TYR ALA THR SEQRES 12 A 627 GLN THR PHE HIS LYS ALA GLU TYR ARG ASN ASN CYS LEU SEQRES 13 A 627 LEU LYS TYR SER PRO GLY GLY THR PRO THR ALA ILE LYS SEQRES 14 A 627 VAL LEU SER ASN VAL GLU SER GLY PHE SER LEU LYS PRO SEQRES 15 A 627 CYS ALA LEU SER GLU ILE GLY CYS HIS MET ASN ILE PHE SEQRES 16 A 627 GLN HIS LEU ALA PHE SER ASP VAL ASP VAL ALA ARG VAL SEQRES 17 A 627 LEU THR PRO ASP ALA PHE VAL CYS ARG THR ILE CYS THR SEQRES 18 A 627 TYR HIS PRO ASN CYS LEU PHE PHE THR PHE TYR THR ASN SEQRES 19 A 627 VAL TRP LYS ILE GLU SER GLN ARG ASN VAL CYS LEU LEU SEQRES 20 A 627 LYS THR SER GLU SER GLY THR PRO SER SER SER THR PRO SEQRES 21 A 627 GLN GLU ASN THR ILE SER GLY TYR SER LEU LEU THR CYS SEQRES 22 A 627 LYS ARG THR LEU PRO GLU PRO CYS HIS SER LYS ILE TYR SEQRES 23 A 627 PRO GLY VAL ASP PHE GLY GLY GLU GLU LEU ASN VAL THR SEQRES 24 A 627 PHE VAL LYS GLY VAL ASN VAL CYS GLN GLU THR CYS THR SEQRES 25 A 627 LYS MET ILE ARG CYS GLN PHE PHE THR TYR SER LEU LEU SEQRES 26 A 627 PRO GLU ASP CYS LYS ALA GLU ALA CYS LYS CYS PHE LEU SEQRES 27 A 627 ARG LEU SER MET ASP GLY SER PRO THR ARG ILE ALA TYR SEQRES 28 A 627 GLY THR GLN GLY SER SER GLY TYR SER LEU ARG LEU CYS SEQRES 29 A 627 ASN THR GLY ASP ASN SER VAL CYS THR THR LYS THR SER SEQRES 30 A 627 THR ARG ILE VAL GLY GLY THR GLN SER SER TRP GLY GLU SEQRES 31 A 627 TRP PRO TRP GLN VAL SER LEU GLN VAL LYS LEU THR ALA SEQRES 32 A 627 GLN ARG HIS LEU CYS GLY GLY SER LEU ILE GLY HIS GLN SEQRES 33 A 627 TRP VAL LEU THR ALA ALA HIS CYS PHE ASP GLY LEU PRO SEQRES 34 A 627 LEU GLN ASP VAL TRP ARG ILE TYR SER GLY ILE LEU GLN SEQRES 35 A 627 LEU SER ASP ILE THR LYS ASP THR PRO PHE SER GLN ILE SEQRES 36 A 627 LYS GLU ILE ILE ILE HIS GLN ASN TYR LYS VAL SER GLU SEQRES 37 A 627 GLY ASN HIS ASP ILE ALA LEU ILE LYS LEU GLN ALA PRO SEQRES 38 A 627 LEU GLN TYR THR GLU PHE GLN LYS PRO ILE CYS LEU PRO SEQRES 39 A 627 SER LYS GLY ASP THR SER THR ILE TYR THR ASN CYS TRP SEQRES 40 A 627 VAL THR GLY TRP GLY PHE SER ALA GLU ALA GLY GLU ILE SEQRES 41 A 627 GLN ASN ILE LEU GLN LYS VAL ASN ILE PRO LEU VAL THR SEQRES 42 A 627 ASN GLU GLU CYS GLN LYS ARG TYR GLN ASP TYR LYS ILE SEQRES 43 A 627 THR GLN ARG MET VAL CYS ALA GLY TYR LYS GLU GLY GLY SEQRES 44 A 627 LYS ASP ALA CYS LYS GLY ASP ALA GLY GLY PRO LEU VAL SEQRES 45 A 627 CYS LYS HIS ASN GLY MET TRP ARG LEU VAL GLY ILE THR SEQRES 46 A 627 SER TRP GLY GLU GLY CYS ALA ARG ARG GLU GLN PRO GLY SEQRES 47 A 627 VAL TYR THR LYS VAL ALA GLU TYR MET ASP TRP ILE LEU SEQRES 48 A 627 GLU LYS THR GLN SER SER ASP GLY LYS ALA GLN MET GLN SEQRES 49 A 627 SER PRO ALA HET NAG B 1 14 HET NAG B 2 7 HET BEN A 701 9 HET MPD A 702 8 HET PE4 A 703 24 HET SO4 A 704 5 HET CL A 705 1 HET NA A 706 1 HET PEG A 707 7 HET PEG A 708 7 HET GOL A 709 6 HET GOL A 710 6 HET GOL A 711 6 HET GOL A 712 6 HET FMT A 713 3 HET FMT A 714 3 HET FMT A 715 3 HET FMT A 716 3 HET FMT A 717 3 HET FMT A 718 3 HET FMT A 719 3 HET FMT A 720 3 HET ACT A 721 4 HET ACT A 722 4 HET ACT A 723 4 HET ACT A 724 4 HET ACT A 725 8 HET ACT A 726 4 HET GLY A 727 5 HET SER A 728 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BEN BENZAMIDINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETNAM ACT ACETATE ION HETNAM GLY GLYCINE HETNAM SER SERINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 BEN C7 H8 N2 FORMUL 4 MPD C6 H14 O2 FORMUL 5 PE4 C16 H34 O8 FORMUL 6 SO4 O4 S 2- FORMUL 7 CL CL 1- FORMUL 8 NA NA 1+ FORMUL 9 PEG 2(C4 H10 O3) FORMUL 11 GOL 4(C3 H8 O3) FORMUL 15 FMT 8(C H2 O2) FORMUL 23 ACT 6(C2 H3 O2 1-) FORMUL 29 GLY C2 H5 N O2 FORMUL 30 SER C3 H7 N O3 FORMUL 31 HOH *637(H2 O) HELIX 1 AA1 ASN A 24 HIS A 35 1 12 HELIX 2 AA2 PRO A 45 ILE A 49 5 5 HELIX 3 AA3 CYS A 85 ILE A 89 5 5 HELIX 4 AA4 SER A 114 ASN A 124 1 11 HELIX 5 AA5 LYS A 140 ARG A 144 5 5 HELIX 6 AA6 SER A 152 THR A 156 5 5 HELIX 7 AA7 LEU A 172 ALA A 176 5 5 HELIX 8 AA8 ASP A 204 HIS A 215 1 12 HELIX 9 AA9 ILE A 230 ARG A 234 5 5 HELIX 10 AB1 GLY A 295 MET A 306 1 12 HELIX 11 AB2 LEU A 317 CYS A 321 5 5 HELIX 12 AB3 ALA A 413 ASP A 418 5 6 HELIX 13 AB4 LEU A 422 ASP A 424 5 3 HELIX 14 AB5 GLN A 434 ILE A 438 5 5 HELIX 15 AB6 THR A 525 TYR A 533 1 9 HELIX 16 AB7 TYR A 598 ASP A 610 1 13 SHEET 1 AA1 5 LEU A 6 PHE A 12 0 SHEET 2 AA1 5 LYS A 70 HIS A 80 -1 O SER A 78 N TYR A 7 SHEET 3 AA1 5 LEU A 40 LEU A 44 -1 N PHE A 43 O VAL A 77 SHEET 4 AA1 5 GLY A 57 LYS A 61 -1 O PHE A 59 N SER A 42 SHEET 5 AA1 5 ASP A 16 TYR A 21 -1 N MET A 20 O CYS A 58 SHEET 1 AA2 5 TYR A 97 ARG A 103 0 SHEET 2 AA2 5 ALA A 159 PHE A 170 -1 O SER A 168 N TYR A 97 SHEET 3 AA2 5 PHE A 130 ALA A 134 -1 N PHE A 131 O GLY A 169 SHEET 4 AA2 5 ASN A 146 TYR A 151 -1 O LEU A 148 N SER A 132 SHEET 5 AA2 5 VAL A 105 LYS A 111 -1 N SER A 110 O CYS A 147 SHEET 1 AA3 5 PHE A 187 ALA A 191 0 SHEET 2 AA3 5 THR A 251 TYR A 260 -1 O SER A 258 N PHE A 187 SHEET 3 AA3 5 PHE A 220 TYR A 224 -1 N PHE A 223 O ILE A 257 SHEET 4 AA3 5 VAL A 236 THR A 241 -1 O LEU A 238 N THR A 222 SHEET 5 AA3 5 VAL A 195 LEU A 201 -1 N VAL A 200 O CYS A 237 SHEET 1 AA4 5 TYR A 278 PRO A 279 0 SHEET 2 AA4 5 GLY A 347 TYR A 351 -1 O SER A 349 N TYR A 278 SHEET 3 AA4 5 PHE A 311 SER A 315 -1 N TYR A 314 O SER A 348 SHEET 4 AA4 5 CYS A 326 LEU A 332 -1 O PHE A 329 N THR A 313 SHEET 5 AA4 5 GLU A 286 VAL A 293 -1 N LEU A 288 O LEU A 330 SHEET 1 AA5 2 ASP A 282 PHE A 283 0 SHEET 2 AA5 2 ILE A 341 ALA A 342 -1 O ALA A 342 N ASP A 282 SHEET 1 AA6 8 THR A 376 GLN A 377 0 SHEET 2 AA6 8 GLN A 517 ASN A 520 -1 O LYS A 518 N THR A 376 SHEET 3 AA6 8 CYS A 498 GLY A 502 -1 N GLY A 502 O GLN A 517 SHEET 4 AA6 8 PRO A 562 HIS A 567 -1 O VAL A 564 N TRP A 499 SHEET 5 AA6 8 MET A 570 TRP A 579 -1 O MET A 570 N HIS A 567 SHEET 6 AA6 8 GLY A 590 LYS A 594 -1 O VAL A 591 N TRP A 579 SHEET 7 AA6 8 MET A 542 ALA A 545 -1 N ALA A 545 O GLY A 590 SHEET 8 AA6 8 LEU A 523 VAL A 524 -1 N VAL A 524 O CYS A 544 SHEET 1 AA7 6 TRP A 426 TYR A 429 0 SHEET 2 AA7 6 GLN A 386 LYS A 392 -1 N GLN A 390 O ARG A 427 SHEET 3 AA7 6 GLN A 396 GLY A 406 -1 O CYS A 400 N LEU A 389 SHEET 4 AA7 6 TRP A 409 THR A 412 -1 O LEU A 411 N SER A 403 SHEET 5 AA7 6 ALA A 466 LEU A 470 -1 O ILE A 468 N VAL A 410 SHEET 6 AA7 6 ILE A 447 ILE A 452 -1 N ILE A 451 O LEU A 467 SSBOND 1 CYS A 2 CYS A 85 1555 1555 2.03 SSBOND 2 CYS A 28 CYS A 58 1555 1555 2.09 SSBOND 3 CYS A 32 CYS A 38 1555 1555 2.14 SSBOND 4 CYS A 92 CYS A 175 1555 1555 2.04 SSBOND 5 CYS A 118 CYS A 147 1555 1555 2.12 SSBOND 6 CYS A 122 CYS A 128 1555 1555 2.20 SSBOND 7 CYS A 182 CYS A 265 1555 1555 1.98 SSBOND 8 CYS A 208 CYS A 237 1555 1555 2.05 SSBOND 9 CYS A 212 CYS A 218 1555 1555 2.11 SSBOND 10 CYS A 273 CYS A 356 1555 1555 2.08 SSBOND 11 CYS A 299 CYS A 328 1555 1555 2.10 SSBOND 12 CYS A 303 CYS A 309 1555 1555 2.20 SSBOND 13 CYS A 321 CYS A 326 1555 1555 2.12 SSBOND 14 CYS A 364 CYS A 484 1555 1555 2.06 SSBOND 15 CYS A 400 CYS A 416 1555 1555 2.07 SSBOND 16 CYS A 498 CYS A 565 1555 1555 2.09 SSBOND 17 CYS A 529 CYS A 544 1555 1555 2.11 SSBOND 18 CYS A 555 CYS A 583 1555 1555 2.15 LINK ND2 ASN A 108 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK OG1 THR A 210 NA NA A 706 1555 1555 2.87 LINK NA NA A 706 O HOH A1013 1555 1555 2.92 CRYST1 90.611 129.633 55.840 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017908 0.00000