HEADER CONTRACTILE PROTEIN 09-NOV-18 6I4H TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM ACTIN I (F54Y MUTANT) IN TITLE 2 THE CA-ATP STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACTIN I; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GELSOLIN; COMPND 9 CHAIN: G; COMPND 10 SYNONYM: ACTIN-DEPOLYMERIZING FACTOR,ADF,BREVIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: ISOLATE 3D7; SOURCE 4 ORGANISM_TAXID: 36329; SOURCE 5 GENE: PFL2215W; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: GSN, GSB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, FILAMENTOUS, GLIDEOSOME, CYTOSKELETON, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.-P.KUMPULA,A.J.LOPEZ,L.TAJEDIN,H.HAN,I.KURSULA REVDAT 2 24-JAN-24 6I4H 1 LINK REVDAT 1 26-JUN-19 6I4H 0 JRNL AUTH E.P.KUMPULA,A.J.LOPEZ,L.TAJEDIN,H.HAN,I.KURSULA JRNL TITL ATOMIC VIEW INTO PLASMODIUM ACTIN POLYMERIZATION, ATP JRNL TITL 2 HYDROLYSIS, AND FRAGMENTATION. JRNL REF PLOS BIOL. V. 17 00315 2019 JRNL REFN ESSN 1545-7885 JRNL PMID 31199804 JRNL DOI 10.1371/JOURNAL.PBIO.3000315 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 206795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 10319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2900 - 4.3500 1.00 6588 337 0.1466 0.1567 REMARK 3 2 4.3500 - 3.4500 1.00 6542 345 0.1229 0.1418 REMARK 3 3 3.4500 - 3.0200 1.00 6587 351 0.1313 0.1293 REMARK 3 4 3.0200 - 2.7400 1.00 6581 345 0.1273 0.1474 REMARK 3 5 2.7400 - 2.5400 1.00 6540 337 0.1239 0.1442 REMARK 3 6 2.5400 - 2.3900 1.00 6558 345 0.1257 0.1574 REMARK 3 7 2.3900 - 2.2700 1.00 6608 350 0.1273 0.1637 REMARK 3 8 2.2700 - 2.1700 1.00 6575 347 0.1294 0.1646 REMARK 3 9 2.1700 - 2.0900 1.00 6508 339 0.1261 0.1555 REMARK 3 10 2.0900 - 2.0200 1.00 6607 350 0.1333 0.1548 REMARK 3 11 2.0200 - 1.9600 1.00 6551 347 0.1363 0.1567 REMARK 3 12 1.9600 - 1.9000 1.00 6599 342 0.1369 0.1560 REMARK 3 13 1.9000 - 1.8500 0.99 6525 341 0.1387 0.1571 REMARK 3 14 1.8500 - 1.8000 1.00 6521 341 0.1388 0.1643 REMARK 3 15 1.8000 - 1.7600 0.99 6585 349 0.1423 0.1587 REMARK 3 16 1.7600 - 1.7300 1.00 6557 341 0.1419 0.1708 REMARK 3 17 1.7300 - 1.6900 0.99 6580 339 0.1535 0.1904 REMARK 3 18 1.6900 - 1.6600 0.99 6596 348 0.1572 0.1922 REMARK 3 19 1.6600 - 1.6300 0.99 6455 343 0.1631 0.1950 REMARK 3 20 1.6300 - 1.6000 0.99 6542 350 0.1723 0.2084 REMARK 3 21 1.6000 - 1.5800 1.00 6624 346 0.1814 0.2115 REMARK 3 22 1.5800 - 1.5500 0.99 6479 334 0.1996 0.2336 REMARK 3 23 1.5500 - 1.5300 0.99 6580 348 0.1996 0.2221 REMARK 3 24 1.5300 - 1.5100 0.99 6540 346 0.2093 0.2394 REMARK 3 25 1.5100 - 1.4900 0.99 6478 341 0.2261 0.2734 REMARK 3 26 1.4900 - 1.4700 0.99 6545 347 0.2351 0.2385 REMARK 3 27 1.4700 - 1.4500 0.99 6553 346 0.2536 0.2621 REMARK 3 28 1.4500 - 1.4300 0.99 6494 341 0.2807 0.3127 REMARK 3 29 1.4300 - 1.4200 0.99 6527 341 0.2931 0.3367 REMARK 3 30 1.4200 - 1.4000 0.99 6451 342 0.3212 0.3571 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.149 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.745 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4340 REMARK 3 ANGLE : 1.152 5959 REMARK 3 CHIRALITY : 0.079 644 REMARK 3 PLANARITY : 0.007 786 REMARK 3 DIHEDRAL : 18.812 1673 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND RESID 34 THROUGH 74 REMARK 3 ORIGIN FOR THE GROUP (A): 78.2526 94.6001 258.3557 REMARK 3 T TENSOR REMARK 3 T11: 0.4686 T22: 0.2819 REMARK 3 T33: 0.3795 T12: -0.0116 REMARK 3 T13: 0.1173 T23: -0.1000 REMARK 3 L TENSOR REMARK 3 L11: 2.5280 L22: 2.9808 REMARK 3 L33: 2.8536 L12: -1.5050 REMARK 3 L13: 1.1157 L23: 1.3770 REMARK 3 S TENSOR REMARK 3 S11: 0.2144 S12: -0.5183 S13: 0.8337 REMARK 3 S21: 0.5266 S22: -0.0608 S23: 0.3692 REMARK 3 S31: -0.9133 S32: -0.3705 S33: 0.1414 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND RESID 138 THROUGH 337 REMARK 3 ORIGIN FOR THE GROUP (A): 85.2679 87.1643 232.4804 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.1389 REMARK 3 T33: 0.1280 T12: -0.0025 REMARK 3 T13: -0.0250 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.7426 L22: 1.7527 REMARK 3 L33: 0.6330 L12: -0.3269 REMARK 3 L13: -0.0550 L23: -0.3430 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.0564 S13: 0.1270 REMARK 3 S21: -0.0415 S22: 0.0299 S23: 0.0634 REMARK 3 S31: -0.1309 S32: -0.0126 S33: -0.0079 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 33 OR RESID 75 REMARK 3 THROUGH 137 OR RESID 339 THROUGH 366) REMARK 3 ORIGIN FOR THE GROUP (A): 80.5640 73.9229 256.6411 REMARK 3 T TENSOR REMARK 3 T11: 0.1017 T22: 0.1747 REMARK 3 T33: 0.1207 T12: 0.0026 REMARK 3 T13: 0.0009 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.8229 L22: 0.9372 REMARK 3 L33: 1.8226 L12: 0.2064 REMARK 3 L13: -0.2757 L23: -0.1231 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.1303 S13: -0.0292 REMARK 3 S21: 0.0653 S22: -0.0376 S23: 0.0050 REMARK 3 S31: 0.0083 S32: 0.1271 S33: 0.0292 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'G' AND RESID 4 THROUGH 125 REMARK 3 ORIGIN FOR THE GROUP (A): 78.9933 52.9043 234.1940 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.0850 REMARK 3 T33: 0.1345 T12: 0.0104 REMARK 3 T13: -0.0094 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.5662 L22: 1.3690 REMARK 3 L33: 1.4115 L12: 0.5053 REMARK 3 L13: 0.4648 L23: 0.2955 REMARK 3 S TENSOR REMARK 3 S11: 0.0621 S12: -0.0157 S13: -0.2376 REMARK 3 S21: -0.0221 S22: -0.0062 S23: -0.1830 REMARK 3 S31: 0.1387 S32: 0.0256 S33: 0.0054 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 206841 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05007 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG3350, 0.1M BIS-TRIS PH 5.9, REMARK 280 0.2M K-SCN; 20% PEG400 USED FOR CRYOPROTECTION, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.43500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.30000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.43500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 807 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 998 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 42 REMARK 465 GLY A 43 REMARK 465 ILE A 44 REMARK 465 MET A 45 REMARK 465 VAL A 46 REMARK 465 GLY A 47 REMARK 465 MET A 48 REMARK 465 GLU A 49 REMARK 465 GLU A 50 REMARK 465 LYS A 51 REMARK 465 GLY A 367 REMARK 465 PRO A 368 REMARK 465 SER A 369 REMARK 465 ILE A 370 REMARK 465 VAL A 371 REMARK 465 HIS A 372 REMARK 465 ARG A 373 REMARK 465 LYS A 374 REMARK 465 CYS A 375 REMARK 465 PHE A 376 REMARK 465 GLY G -1 REMARK 465 PRO G 0 REMARK 465 MET G 1 REMARK 465 VAL G 2 REMARK 465 ARG G 53 REMARK 465 ASN G 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 199 O HOH A 513 1.57 REMARK 500 HH22 ARG A 197 O HOH A 518 1.60 REMARK 500 O HOH G 367 O HOH G 417 1.82 REMARK 500 O HOH A 545 O HOH A 885 1.85 REMARK 500 O HOH A 683 O HOH A 765 1.88 REMARK 500 O HOH A 574 O HOH A 893 1.94 REMARK 500 O HOH A 624 O HOH A 730 1.99 REMARK 500 O HOH A 524 O HOH A 636 2.01 REMARK 500 O HOH G 417 O HOH G 424 2.01 REMARK 500 O HOH A 812 O HOH A 826 2.01 REMARK 500 O HOH A 822 O HOH A 910 2.01 REMARK 500 O HOH A 869 O HOH A 927 2.02 REMARK 500 O HOH A 509 O HOH A 887 2.02 REMARK 500 OH TYR A 92 O HOH A 501 2.03 REMARK 500 O HOH A 511 O HOH A 779 2.05 REMARK 500 OE2 GLU A 254 O HOH A 502 2.07 REMARK 500 O HOH A 915 O HOH A 950 2.08 REMARK 500 O HOH A 695 O HOH A 955 2.08 REMARK 500 O HOH A 853 O HOH A 870 2.09 REMARK 500 O HOH G 356 O HOH G 376 2.10 REMARK 500 O HOH A 747 O HOH A 883 2.11 REMARK 500 O HOH A 871 O HOH A 905 2.12 REMARK 500 O HOH A 563 O HOH A 697 2.14 REMARK 500 O HOH G 315 O HOH G 393 2.14 REMARK 500 O HOH A 761 O HOH A 990 2.18 REMARK 500 O HOH G 337 O HOH G 460 2.18 REMARK 500 O HOH A 501 O HOH A 780 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH G 419 O HOH G 427 2759 1.99 REMARK 500 O HOH A 585 O HOH A 728 4775 2.01 REMARK 500 O HOH A 522 O HOH A 741 3479 2.10 REMARK 500 O HOH G 356 O HOH G 356 2759 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 182 -156.74 -161.87 REMARK 500 ALA A 182 -156.74 -150.60 REMARK 500 SER A 202 -30.26 -146.06 REMARK 500 SER A 202 -29.42 -146.06 REMARK 500 THR A 203 -178.39 -69.94 REMARK 500 ASN A 297 57.16 -148.15 REMARK 500 GLU G 4 -165.52 -113.86 REMARK 500 HIS G 5 145.34 163.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 999 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 OE1 REMARK 620 2 ASP G 85 OD1 133.4 REMARK 620 3 ASP G 85 OD2 85.5 48.2 REMARK 620 4 GLY G 90 O 151.4 73.4 118.6 REMARK 620 5 ALA G 92 O 98.1 78.4 88.8 97.7 REMARK 620 6 HOH G 391 O 78.9 147.3 164.4 76.5 93.3 REMARK 620 7 HOH G 402 O 88.7 85.2 75.5 83.3 162.5 103.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O2G REMARK 620 2 ATP A 401 O1B 77.8 REMARK 620 3 HOH A 572 O 70.9 100.0 REMARK 620 4 HOH A 581 O 132.3 95.4 63.9 REMARK 620 5 HOH A 583 O 96.0 171.3 83.5 93.2 REMARK 620 6 HOH A 621 O 148.5 83.8 138.3 74.4 99.0 REMARK 620 7 HOH A 632 O 77.5 93.3 142.0 150.2 79.3 78.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY G 41 O REMARK 620 2 ASP G 42 OD1 77.4 REMARK 620 3 GLU G 73 OE1 75.0 100.1 REMARK 620 4 GLU G 73 OE2 121.8 88.9 51.9 REMARK 620 5 VAL G 121 O 149.5 91.4 135.3 85.7 REMARK 620 6 HOH G 385 O 101.0 174.1 74.0 87.1 92.7 REMARK 620 7 HOH G 394 O 78.3 102.2 140.3 159.1 76.5 83.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA G 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA G 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6I4D RELATED DB: PDB REMARK 900 RELATED ID: 6I4E RELATED DB: PDB REMARK 900 RELATED ID: 6I4F RELATED DB: PDB REMARK 900 RELATED ID: 6I4G RELATED DB: PDB DBREF 6I4H A 1 376 UNP Q8I4X0 ACT1_PLAF7 1 376 DBREF 6I4H G 1 125 UNP P13020 GELS_MOUSE 1 125 SEQADV 6I4H GLY A -1 UNP Q8I4X0 EXPRESSION TAG SEQADV 6I4H ALA A 0 UNP Q8I4X0 EXPRESSION TAG SEQADV 6I4H TYR A 54 UNP Q8I4X0 PHE 54 ENGINEERED MUTATION SEQADV 6I4H GLY G -1 UNP P13020 EXPRESSION TAG SEQADV 6I4H PRO G 0 UNP P13020 EXPRESSION TAG SEQRES 1 A 378 GLY ALA MET GLY GLU GLU ASP VAL GLN ALA LEU VAL VAL SEQRES 2 A 378 ASP ASN GLY SER GLY ASN VAL LYS ALA GLY VAL ALA GLY SEQRES 3 A 378 ASP ASP ALA PRO ARG SER VAL PHE PRO SER ILE VAL GLY SEQRES 4 A 378 ARG PRO LYS ASN PRO GLY ILE MET VAL GLY MET GLU GLU SEQRES 5 A 378 LYS ASP ALA TYR VAL GLY ASP GLU ALA GLN THR LYS ARG SEQRES 6 A 378 GLY ILE LEU THR LEU LYS TYR PRO ILE GLU HIS GLY ILE SEQRES 7 A 378 VAL THR ASN TRP ASP ASP MET GLU LYS ILE TRP HIS HIS SEQRES 8 A 378 THR PHE TYR ASN GLU LEU ARG ALA ALA PRO GLU GLU HIS SEQRES 9 A 378 PRO VAL LEU LEU THR GLU ALA PRO LEU ASN PRO LYS GLY SEQRES 10 A 378 ASN ARG GLU ARG MET THR GLN ILE MET PHE GLU SER PHE SEQRES 11 A 378 ASN VAL PRO ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SEQRES 12 A 378 SER LEU TYR SER SER GLY ARG THR THR GLY ILE VAL LEU SEQRES 13 A 378 ASP SER GLY ASP GLY VAL SER HIS THR VAL PRO ILE TYR SEQRES 14 A 378 GLU GLY TYR ALA LEU PRO HIS ALA ILE MET ARG LEU ASP SEQRES 15 A 378 LEU ALA GLY ARG ASP LEU THR GLU TYR LEU MET LYS ILE SEQRES 16 A 378 LEU HIS GLU ARG GLY TYR GLY PHE SER THR SER ALA GLU SEQRES 17 A 378 LYS GLU ILE VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR SEQRES 18 A 378 ILE ALA LEU ASN PHE ASP GLU GLU MET LYS THR SER GLU SEQRES 19 A 378 GLN SER SER ASP ILE GLU LYS SER TYR GLU LEU PRO ASP SEQRES 20 A 378 GLY ASN ILE ILE THR VAL GLY ASN GLU ARG PHE ARG CYS SEQRES 21 A 378 PRO GLU ALA LEU PHE GLN PRO SER PHE LEU GLY LYS GLU SEQRES 22 A 378 ALA ALA GLY ILE HIS THR THR THR PHE ASN SER ILE LYS SEQRES 23 A 378 LYS CYS ASP VAL ASP ILE ARG LYS ASP LEU TYR GLY ASN SEQRES 24 A 378 ILE VAL LEU SER GLY GLY THR THR MET TYR GLU GLY ILE SEQRES 25 A 378 GLY GLU ARG LEU THR ARG ASP ILE THR THR LEU ALA PRO SEQRES 26 A 378 SER THR MET LYS ILE LYS VAL VAL ALA PRO PRO GLU ARG SEQRES 27 A 378 LYS TYR SER VAL TRP ILE GLY GLY SER ILE LEU SER SER SEQRES 28 A 378 LEU SER THR PHE GLN GLN MET TRP ILE THR LYS GLU GLU SEQRES 29 A 378 TYR ASP GLU SER GLY PRO SER ILE VAL HIS ARG LYS CYS SEQRES 30 A 378 PHE SEQRES 1 G 127 GLY PRO MET VAL VAL GLU HIS PRO GLU PHE LEU LYS ALA SEQRES 2 G 127 GLY LYS GLU PRO GLY LEU GLN ILE TRP ARG VAL GLU LYS SEQRES 3 G 127 PHE ASP LEU VAL PRO VAL PRO PRO ASN LEU TYR GLY ASP SEQRES 4 G 127 PHE PHE THR GLY ASP ALA TYR VAL ILE LEU LYS THR VAL SEQRES 5 G 127 GLN LEU ARG ASN GLY ASN LEU GLN TYR ASP LEU HIS TYR SEQRES 6 G 127 TRP LEU GLY ASN GLU CYS SER GLN ASP GLU SER GLY ALA SEQRES 7 G 127 ALA ALA ILE PHE THR VAL GLN LEU ASP ASP TYR LEU ASN SEQRES 8 G 127 GLY ARG ALA VAL GLN HIS ARG GLU VAL GLN GLY PHE GLU SEQRES 9 G 127 SER SER THR PHE SER GLY TYR PHE LYS SER GLY LEU LYS SEQRES 10 G 127 TYR LYS LYS GLY GLY VAL ALA SER GLY PHE HET ATP A 401 43 HET CA A 402 1 HET CL A 403 1 HET PEG A 404 17 HET CA G 201 1 HET CA G 202 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 CA 3(CA 2+) FORMUL 5 CL CL 1- FORMUL 6 PEG C4 H10 O3 FORMUL 9 HOH *680(H2 O) HELIX 1 AA1 GLY A 56 THR A 61 1 6 HELIX 2 AA2 ASN A 79 ASN A 93 1 15 HELIX 3 AA3 ALA A 98 HIS A 102 5 5 HELIX 4 AA4 PRO A 113 SER A 127 1 15 HELIX 5 AA5 GLN A 138 SER A 146 1 9 HELIX 6 AA6 PRO A 173 ILE A 176 5 4 HELIX 7 AA7 ALA A 182 LEU A 194 1 13 HELIX 8 AA8 HIS A 195 GLY A 198 5 4 HELIX 9 AA9 THR A 203 CYS A 218 1 16 HELIX 10 AB1 ASN A 223 GLN A 233 1 11 HELIX 11 AB2 ASN A 253 ALA A 261 1 9 HELIX 12 AB3 LEU A 262 PHE A 263 5 2 HELIX 13 AB4 GLN A 264 GLY A 269 5 6 HELIX 14 AB5 GLY A 274 LYS A 285 1 12 HELIX 15 AB6 ASP A 287 ASP A 289 5 3 HELIX 16 AB7 ILE A 290 GLY A 296 1 7 HELIX 17 AB8 GLY A 302 MET A 306 5 5 HELIX 18 AB9 GLY A 309 ALA A 322 1 14 HELIX 19 AC1 GLU A 335 LYS A 337 5 3 HELIX 20 AC2 TYR A 338 LEU A 350 1 13 HELIX 21 AC3 THR A 352 MET A 356 5 5 HELIX 22 AC4 LYS A 360 GLU A 365 1 6 HELIX 23 AC5 HIS G 5 ALA G 11 1 7 HELIX 24 AC6 PRO G 31 TYR G 35 5 5 HELIX 25 AC7 SER G 70 LEU G 88 1 19 HELIX 26 AC8 SER G 103 GLY G 108 1 6 SHEET 1 AA1 6 SER A 30 PRO A 33 0 SHEET 2 AA1 6 ASN A 17 VAL A 22 -1 N ALA A 20 O SER A 30 SHEET 3 AA1 6 LEU A 9 ASN A 13 -1 N ASP A 12 O LYS A 19 SHEET 4 AA1 6 VAL A 104 GLU A 108 1 O LEU A 105 N LEU A 9 SHEET 5 AA1 6 ALA A 132 ILE A 137 1 O TYR A 134 N LEU A 106 SHEET 6 AA1 6 ILE A 358 THR A 359 -1 O ILE A 358 N MET A 133 SHEET 1 AA2 3 TYR A 54 VAL A 55 0 SHEET 2 AA2 3 VAL A 36 PRO A 39 -1 N GLY A 37 O TYR A 54 SHEET 3 AA2 3 LEU A 66 LYS A 69 -1 O THR A 67 N ARG A 38 SHEET 1 AA3 2 ILE A 72 GLU A 73 0 SHEET 2 AA3 2 ILE A 76 VAL A 77 -1 O ILE A 76 N GLU A 73 SHEET 1 AA4 3 TYR A 170 ALA A 171 0 SHEET 2 AA4 3 SER A 161 TYR A 167 -1 N TYR A 167 O TYR A 170 SHEET 3 AA4 3 MET A 177 LEU A 179 -1 O LEU A 179 N SER A 161 SHEET 1 AA5 5 TYR A 170 ALA A 171 0 SHEET 2 AA5 5 SER A 161 TYR A 167 -1 N TYR A 167 O TYR A 170 SHEET 3 AA5 5 GLY A 151 SER A 156 -1 N GLY A 151 O ILE A 166 SHEET 4 AA5 5 ILE A 298 SER A 301 1 O VAL A 299 N ILE A 152 SHEET 5 AA5 5 VAL A 330 VAL A 331 1 O VAL A 331 N ILE A 298 SHEET 1 AA6 2 LYS A 239 GLU A 242 0 SHEET 2 AA6 2 ILE A 248 VAL A 251 -1 O VAL A 251 N LYS A 239 SHEET 1 AA7 5 ASP G 26 PRO G 29 0 SHEET 2 AA7 5 GLY G 16 GLU G 23 -1 N ARG G 21 O VAL G 28 SHEET 3 AA7 5 ALA G 43 GLN G 51 -1 O VAL G 45 N TRP G 20 SHEET 4 AA7 5 LEU G 57 LEU G 65 -1 O HIS G 62 N ILE G 46 SHEET 5 AA7 5 VAL G 93 VAL G 98 1 O GLU G 97 N TYR G 63 SHEET 1 AA8 2 ASP G 37 PHE G 39 0 SHEET 2 AA8 2 LYS G 115 LYS G 117 1 O LYS G 115 N PHE G 38 LINK OE1 GLU A 168 CA CA G 202 1555 1555 2.46 LINK O2G ATP A 401 CA CA A 402 1555 1555 2.33 LINK O1B ATP A 401 CA CA A 402 1555 1555 2.31 LINK CA CA A 402 O HOH A 572 1555 1555 2.71 LINK CA CA A 402 O HOH A 581 1555 1555 2.43 LINK CA CA A 402 O HOH A 583 1555 1555 2.35 LINK CA CA A 402 O HOH A 621 1555 1555 2.45 LINK CA CA A 402 O HOH A 632 1555 1555 2.50 LINK O GLY G 41 CA CA G 201 1555 1555 2.38 LINK OD1 ASP G 42 CA CA G 201 1555 1555 2.30 LINK OE1 GLU G 73 CA CA G 201 1555 1555 2.55 LINK OE2 GLU G 73 CA CA G 201 1555 1555 2.41 LINK OD1 ASP G 85 CA CA G 202 1555 1555 2.87 LINK OD2 ASP G 85 CA CA G 202 1555 1555 2.35 LINK O GLY G 90 CA CA G 202 1555 1555 2.42 LINK O ALA G 92 CA CA G 202 1555 1555 2.34 LINK O VAL G 121 CA CA G 201 1555 1555 2.36 LINK CA CA G 201 O HOH G 385 1555 1555 2.40 LINK CA CA G 201 O HOH G 394 1555 1555 2.39 LINK CA CA G 202 O HOH G 391 1555 1555 2.31 LINK CA CA G 202 O HOH G 402 1555 1555 2.49 SITE 1 AC1 28 GLY A 14 SER A 15 GLY A 16 ASN A 17 SITE 2 AC1 28 LYS A 19 GLY A 157 ASP A 158 GLY A 159 SITE 3 AC1 28 VAL A 160 GLY A 183 ARG A 211 LYS A 214 SITE 4 AC1 28 GLU A 215 GLY A 302 GLY A 303 THR A 304 SITE 5 AC1 28 MET A 306 TYR A 307 LYS A 337 CA A 402 SITE 6 AC1 28 HOH A 535 HOH A 572 HOH A 590 HOH A 595 SITE 7 AC1 28 HOH A 632 HOH A 651 HOH A 657 HOH A 746 SITE 1 AC2 6 ATP A 401 HOH A 572 HOH A 581 HOH A 583 SITE 2 AC2 6 HOH A 621 HOH A 632 SITE 1 AC3 6 THR A 319 THR A 320 ALA A 322 SER A 324 SITE 2 AC3 6 HOH A 715 HOH A 896 SITE 1 AC4 14 SER A 142 SER A 145 SER A 146 PRO A 333 SITE 2 AC4 14 PRO A 334 GLU A 335 SER A 339 HOH A 548 SITE 3 AC4 14 HOH A 551 HOH A 615 HOH A 731 HOH A 862 SITE 4 AC4 14 HOH A 909 GLN G 71 SITE 1 AC5 6 GLY G 41 ASP G 42 GLU G 73 VAL G 121 SITE 2 AC5 6 HOH G 385 HOH G 394 SITE 1 AC6 6 GLU A 168 ASP G 85 GLY G 90 ALA G 92 SITE 2 AC6 6 HOH G 391 HOH G 402 CRYST1 68.870 71.540 110.600 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009042 0.00000