HEADER CONTRACTILE PROTEIN 09-NOV-18 6I4I TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM ACTIN I (F54Y MUTANT) IN TITLE 2 THE MG-K-ADP-ALFN STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACTIN I; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GELSOLIN; COMPND 9 CHAIN: G; COMPND 10 SYNONYM: ACTIN-DEPOLYMERIZING FACTOR,ADF,BREVIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: ISOLATE 3D7; SOURCE 4 ORGANISM_TAXID: 36329; SOURCE 5 GENE: PFL2215W; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: GSN, GSB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, FILAMENTOUS, GLIDEOSOME, CYTOSKELETON, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.-P.KUMPULA,A.J.LOPEZ,L.TAJEDIN,H.HAN,I.KURSULA REVDAT 2 24-JAN-24 6I4I 1 REMARK LINK REVDAT 1 26-JUN-19 6I4I 0 JRNL AUTH E.P.KUMPULA,A.J.LOPEZ,L.TAJEDIN,H.HAN,I.KURSULA JRNL TITL ATOMIC VIEW INTO PLASMODIUM ACTIN POLYMERIZATION, ATP JRNL TITL 2 HYDROLYSIS, AND FRAGMENTATION. JRNL REF PLOS BIOL. V. 17 00315 2019 JRNL REFN ESSN 1545-7885 JRNL PMID 31199804 JRNL DOI 10.1371/JOURNAL.PBIO.3000315 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 81217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0600 - 5.8300 0.99 2665 143 0.1810 0.2003 REMARK 3 2 5.8300 - 4.6300 1.00 2677 136 0.1263 0.1755 REMARK 3 3 4.6300 - 4.0500 1.00 2665 150 0.1105 0.1391 REMARK 3 4 4.0500 - 3.6800 0.99 2635 142 0.1352 0.1726 REMARK 3 5 3.6800 - 3.4100 0.99 2642 137 0.1438 0.1653 REMARK 3 6 3.4100 - 3.2100 1.00 2671 138 0.1568 0.2145 REMARK 3 7 3.2100 - 3.0500 1.00 2691 143 0.1662 0.1727 REMARK 3 8 3.0500 - 2.9200 1.00 2685 135 0.1586 0.2165 REMARK 3 9 2.9200 - 2.8100 1.00 2662 144 0.1574 0.1923 REMARK 3 10 2.8100 - 2.7100 1.00 2661 143 0.1562 0.2058 REMARK 3 11 2.7100 - 2.6200 0.99 2662 139 0.1602 0.2501 REMARK 3 12 2.6200 - 2.5500 1.00 2638 140 0.1598 0.1944 REMARK 3 13 2.5500 - 2.4800 1.00 2683 139 0.1611 0.1903 REMARK 3 14 2.4800 - 2.4200 1.00 2667 143 0.1590 0.2213 REMARK 3 15 2.4200 - 2.3700 1.00 2652 136 0.1768 0.2250 REMARK 3 16 2.3700 - 2.3200 1.00 2719 145 0.1781 0.2434 REMARK 3 17 2.3200 - 2.2700 0.99 2639 135 0.2007 0.2742 REMARK 3 18 2.2700 - 2.2300 0.99 2665 140 0.2498 0.3081 REMARK 3 19 2.2300 - 2.1900 1.00 2657 134 0.2355 0.3001 REMARK 3 20 2.1900 - 2.1500 1.00 2660 139 0.2272 0.2924 REMARK 3 21 2.1500 - 2.1200 1.00 2640 141 0.2578 0.3249 REMARK 3 22 2.1200 - 2.0800 0.99 2660 140 0.3034 0.3001 REMARK 3 23 2.0800 - 2.0500 0.98 2676 141 0.3367 0.3465 REMARK 3 24 2.0500 - 2.0200 0.99 2607 133 0.3325 0.3367 REMARK 3 25 2.0200 - 2.0000 0.99 2678 140 0.3148 0.3297 REMARK 3 26 2.0000 - 1.9700 0.99 2654 143 0.2967 0.2960 REMARK 3 27 1.9700 - 1.9500 0.99 2664 136 0.3251 0.3540 REMARK 3 28 1.9500 - 1.9200 0.99 2659 141 0.3608 0.3636 REMARK 3 29 1.9200 - 1.9000 0.99 2624 143 0.4465 0.4715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.302 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.927 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4026 REMARK 3 ANGLE : 0.893 5473 REMARK 3 CHIRALITY : 0.052 590 REMARK 3 PLANARITY : 0.006 714 REMARK 3 DIHEDRAL : 10.702 2406 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND RESID 34 THROUGH 74 REMARK 3 ORIGIN FOR THE GROUP (A): 59.7291 59.0985 17.2034 REMARK 3 T TENSOR REMARK 3 T11: 0.5309 T22: 0.3100 REMARK 3 T33: 0.5134 T12: 0.0271 REMARK 3 T13: 0.0856 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 5.3068 L22: 3.3898 REMARK 3 L33: 8.8599 L12: 2.2351 REMARK 3 L13: 0.0480 L23: -3.6974 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.4607 S13: 0.8973 REMARK 3 S21: -0.4386 S22: -0.1974 S23: -0.1502 REMARK 3 S31: -0.8788 S32: 0.4182 S33: 0.0359 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND RESID 138 THROUGH 337 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1082 51.5245 43.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.2251 REMARK 3 T33: 0.1957 T12: 0.0065 REMARK 3 T13: -0.0203 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.9148 L22: 2.6806 REMARK 3 L33: 0.6856 L12: 0.6117 REMARK 3 L13: 0.0010 L23: 0.3070 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0758 S13: 0.0749 REMARK 3 S21: 0.0553 S22: -0.0144 S23: 0.0034 REMARK 3 S31: -0.0850 S32: -0.0257 S33: 0.0083 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 33 OR RESID 75 REMARK 3 THROUGH 137 OR RESID 339 THROUGH 366) REMARK 3 ORIGIN FOR THE GROUP (A): 56.9266 38.2381 19.4922 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.2977 REMARK 3 T33: 0.2208 T12: -0.0124 REMARK 3 T13: 0.0058 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.3520 L22: 1.4805 REMARK 3 L33: 2.0153 L12: -0.3489 REMARK 3 L13: -0.0330 L23: 0.1522 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: 0.1224 S13: 0.0004 REMARK 3 S21: -0.0768 S22: -0.0404 S23: 0.0350 REMARK 3 S31: -0.0057 S32: -0.1610 S33: 0.0029 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'G' AND RESID 28 THROUGH 149 REMARK 3 ORIGIN FOR THE GROUP (A): 57.4093 16.6408 41.5766 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.2182 REMARK 3 T33: 0.2699 T12: 0.0171 REMARK 3 T13: -0.0005 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 2.7082 L22: 2.9116 REMARK 3 L33: 2.3788 L12: 0.3765 REMARK 3 L13: 0.5425 L23: -0.4025 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: 0.0301 S13: -0.2026 REMARK 3 S21: 0.0683 S22: 0.0025 S23: 0.1844 REMARK 3 S31: 0.1640 S32: -0.0056 S33: -0.0262 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.09613 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.70990 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG3350, 0.1M BIS-TRIS PH 5.9, REMARK 280 0.2M K-SCN; 20% PEG400 USED FOR CRYOPROTECTION, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.30500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.62500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.30500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 664 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 ASP A 5 REMARK 465 GLY A 43 REMARK 465 ILE A 44 REMARK 465 MET A 45 REMARK 465 VAL A 46 REMARK 465 GLY A 47 REMARK 465 MET A 48 REMARK 465 GLU A 49 REMARK 465 GLU A 50 REMARK 465 LYS A 51 REMARK 465 GLY A 367 REMARK 465 PRO A 368 REMARK 465 SER A 369 REMARK 465 ILE A 370 REMARK 465 VAL A 371 REMARK 465 HIS A 372 REMARK 465 ARG A 373 REMARK 465 LYS A 374 REMARK 465 CYS A 375 REMARK 465 PHE A 376 REMARK 465 GLY G -1 REMARK 465 PRO G 0 REMARK 465 MET G 1 REMARK 465 VAL G 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 96 N CA C O CB CG CD REMARK 480 ARG A 96 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS G 117 O HOH G 305 1.58 REMARK 500 O2B ADP A 401 AL AF3 A 402 1.87 REMARK 500 O HOH A 503 O HOH A 645 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP G 37 HZ3 LYS G 115 2756 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 181 160.30 143.82 REMARK 500 SER A 202 -34.29 -146.26 REMARK 500 ASN A 297 55.25 -148.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 155 OD1 REMARK 620 2 VAL A 160 O 121.4 REMARK 620 3 HOH A 518 O 64.1 171.0 REMARK 620 4 HOH A 552 O 96.6 102.9 82.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 OE1 REMARK 620 2 HOH A 630 O 73.8 REMARK 620 3 ASP G 85 OD1 134.3 151.2 REMARK 620 4 ASP G 85 OD2 88.4 162.1 46.7 REMARK 620 5 GLY G 90 O 143.9 77.4 78.2 117.9 REMARK 620 6 ALA G 92 O 101.0 95.3 75.7 90.4 103.0 REMARK 620 7 HOH G 313 O 85.9 111.0 81.3 64.1 84.5 153.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 406 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 319 O REMARK 620 2 THR A 320 O 70.6 REMARK 620 3 ALA A 322 O 77.5 90.9 REMARK 620 4 SER A 324 OG 123.3 164.9 97.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 401 O3B REMARK 620 2 HOH A 518 O 169.2 REMARK 620 3 HOH A 524 O 93.2 93.6 REMARK 620 4 HOH A 570 O 91.6 80.5 86.1 REMARK 620 5 HOH A 643 O 99.2 89.3 89.0 168.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY G 41 O REMARK 620 2 ASP G 42 OD1 76.0 REMARK 620 3 GLU G 73 OE1 75.3 99.9 REMARK 620 4 GLU G 73 OE2 122.6 89.5 52.7 REMARK 620 5 VAL G 121 O 146.5 88.6 137.5 86.2 REMARK 620 6 HOH G 353 O 100.9 173.4 73.6 87.5 97.0 REMARK 620 7 HOH G 359 O 77.4 97.0 143.1 160.1 75.2 87.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AF3 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA G 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA G 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6I4D RELATED DB: PDB REMARK 900 RELATED ID: 6I4E RELATED DB: PDB REMARK 900 RELATED ID: 6I4F RELATED DB: PDB REMARK 900 RELATED ID: 6I4G RELATED DB: PDB REMARK 900 RELATED ID: 6I4H RELATED DB: PDB DBREF 6I4I A 1 376 UNP Q8I4X0 ACT1_PLAF7 1 376 DBREF 6I4I G 1 125 UNP P13020 GELS_MOUSE 1 125 SEQADV 6I4I GLY A -1 UNP Q8I4X0 EXPRESSION TAG SEQADV 6I4I ALA A 0 UNP Q8I4X0 EXPRESSION TAG SEQADV 6I4I TYR A 54 UNP Q8I4X0 PHE 54 ENGINEERED MUTATION SEQADV 6I4I GLY G -1 UNP P13020 EXPRESSION TAG SEQADV 6I4I PRO G 0 UNP P13020 EXPRESSION TAG SEQRES 1 A 378 GLY ALA MET GLY GLU GLU ASP VAL GLN ALA LEU VAL VAL SEQRES 2 A 378 ASP ASN GLY SER GLY ASN VAL LYS ALA GLY VAL ALA GLY SEQRES 3 A 378 ASP ASP ALA PRO ARG SER VAL PHE PRO SER ILE VAL GLY SEQRES 4 A 378 ARG PRO LYS ASN PRO GLY ILE MET VAL GLY MET GLU GLU SEQRES 5 A 378 LYS ASP ALA TYR VAL GLY ASP GLU ALA GLN THR LYS ARG SEQRES 6 A 378 GLY ILE LEU THR LEU LYS TYR PRO ILE GLU HIS GLY ILE SEQRES 7 A 378 VAL THR ASN TRP ASP ASP MET GLU LYS ILE TRP HIS HIS SEQRES 8 A 378 THR PHE TYR ASN GLU LEU ARG ALA ALA PRO GLU GLU HIS SEQRES 9 A 378 PRO VAL LEU LEU THR GLU ALA PRO LEU ASN PRO LYS GLY SEQRES 10 A 378 ASN ARG GLU ARG MET THR GLN ILE MET PHE GLU SER PHE SEQRES 11 A 378 ASN VAL PRO ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SEQRES 12 A 378 SER LEU TYR SER SER GLY ARG THR THR GLY ILE VAL LEU SEQRES 13 A 378 ASP SER GLY ASP GLY VAL SER HIS THR VAL PRO ILE TYR SEQRES 14 A 378 GLU GLY TYR ALA LEU PRO HIS ALA ILE MET ARG LEU ASP SEQRES 15 A 378 LEU ALA GLY ARG ASP LEU THR GLU TYR LEU MET LYS ILE SEQRES 16 A 378 LEU HIS GLU ARG GLY TYR GLY PHE SER THR SER ALA GLU SEQRES 17 A 378 LYS GLU ILE VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR SEQRES 18 A 378 ILE ALA LEU ASN PHE ASP GLU GLU MET LYS THR SER GLU SEQRES 19 A 378 GLN SER SER ASP ILE GLU LYS SER TYR GLU LEU PRO ASP SEQRES 20 A 378 GLY ASN ILE ILE THR VAL GLY ASN GLU ARG PHE ARG CYS SEQRES 21 A 378 PRO GLU ALA LEU PHE GLN PRO SER PHE LEU GLY LYS GLU SEQRES 22 A 378 ALA ALA GLY ILE HIS THR THR THR PHE ASN SER ILE LYS SEQRES 23 A 378 LYS CYS ASP VAL ASP ILE ARG LYS ASP LEU TYR GLY ASN SEQRES 24 A 378 ILE VAL LEU SER GLY GLY THR THR MET TYR GLU GLY ILE SEQRES 25 A 378 GLY GLU ARG LEU THR ARG ASP ILE THR THR LEU ALA PRO SEQRES 26 A 378 SER THR MET LYS ILE LYS VAL VAL ALA PRO PRO GLU ARG SEQRES 27 A 378 LYS TYR SER VAL TRP ILE GLY GLY SER ILE LEU SER SER SEQRES 28 A 378 LEU SER THR PHE GLN GLN MET TRP ILE THR LYS GLU GLU SEQRES 29 A 378 TYR ASP GLU SER GLY PRO SER ILE VAL HIS ARG LYS CYS SEQRES 30 A 378 PHE SEQRES 1 G 127 GLY PRO MET VAL VAL GLU HIS PRO GLU PHE LEU LYS ALA SEQRES 2 G 127 GLY LYS GLU PRO GLY LEU GLN ILE TRP ARG VAL GLU LYS SEQRES 3 G 127 PHE ASP LEU VAL PRO VAL PRO PRO ASN LEU TYR GLY ASP SEQRES 4 G 127 PHE PHE THR GLY ASP ALA TYR VAL ILE LEU LYS THR VAL SEQRES 5 G 127 GLN LEU ARG ASN GLY ASN LEU GLN TYR ASP LEU HIS TYR SEQRES 6 G 127 TRP LEU GLY ASN GLU CYS SER GLN ASP GLU SER GLY ALA SEQRES 7 G 127 ALA ALA ILE PHE THR VAL GLN LEU ASP ASP TYR LEU ASN SEQRES 8 G 127 GLY ARG ALA VAL GLN HIS ARG GLU VAL GLN GLY PHE GLU SEQRES 9 G 127 SER SER THR PHE SER GLY TYR PHE LYS SER GLY LEU LYS SEQRES 10 G 127 TYR LYS LYS GLY GLY VAL ALA SER GLY PHE HET ADP A 401 38 HET AF3 A 402 4 HET MG A 403 1 HET K A 404 1 HET SCN A 405 3 HET K A 406 1 HET CA G 201 1 HET CA G 202 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AF3 ALUMINUM FLUORIDE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM SCN THIOCYANATE ION HETNAM CA CALCIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 AF3 AL F3 FORMUL 5 MG MG 2+ FORMUL 6 K 2(K 1+) FORMUL 7 SCN C N S 1- FORMUL 9 CA 2(CA 2+) FORMUL 11 HOH *271(H2 O) HELIX 1 AA1 GLY A 56 LYS A 62 1 7 HELIX 2 AA2 ASN A 79 ASN A 93 1 15 HELIX 3 AA3 ALA A 98 HIS A 102 5 5 HELIX 4 AA4 PRO A 113 SER A 127 1 15 HELIX 5 AA5 GLN A 138 SER A 146 1 9 HELIX 6 AA6 PRO A 173 ILE A 176 5 4 HELIX 7 AA7 ALA A 182 LEU A 194 1 13 HELIX 8 AA8 HIS A 195 GLY A 198 5 4 HELIX 9 AA9 THR A 203 CYS A 218 1 16 HELIX 10 AB1 ASN A 223 GLN A 233 1 11 HELIX 11 AB2 ASN A 253 CYS A 258 1 6 HELIX 12 AB3 PRO A 259 PHE A 263 5 5 HELIX 13 AB4 GLN A 264 GLY A 269 5 6 HELIX 14 AB5 GLY A 274 LYS A 285 1 12 HELIX 15 AB6 ASP A 287 GLY A 296 1 10 HELIX 16 AB7 GLY A 302 MET A 306 5 5 HELIX 17 AB8 GLY A 309 ALA A 322 1 14 HELIX 18 AB9 GLU A 335 LYS A 337 5 3 HELIX 19 AC1 TYR A 338 LEU A 350 1 13 HELIX 20 AC2 THR A 352 MET A 356 5 5 HELIX 21 AC3 LYS A 360 SER A 366 1 7 HELIX 22 AC4 HIS G 5 ALA G 11 1 7 HELIX 23 AC5 PRO G 31 TYR G 35 5 5 HELIX 24 AC6 SER G 70 LEU G 88 1 19 HELIX 25 AC7 SER G 103 GLY G 108 1 6 SHEET 1 AA1 6 SER A 30 PRO A 33 0 SHEET 2 AA1 6 ASN A 17 VAL A 22 -1 N ALA A 20 O SER A 30 SHEET 3 AA1 6 LEU A 9 ASN A 13 -1 N ASP A 12 O LYS A 19 SHEET 4 AA1 6 VAL A 104 GLU A 108 1 O LEU A 105 N LEU A 9 SHEET 5 AA1 6 ALA A 132 ILE A 137 1 O TYR A 134 N LEU A 106 SHEET 6 AA1 6 ILE A 358 THR A 359 -1 O ILE A 358 N MET A 133 SHEET 1 AA2 3 TYR A 54 VAL A 55 0 SHEET 2 AA2 3 VAL A 36 PRO A 39 -1 N GLY A 37 O TYR A 54 SHEET 3 AA2 3 LEU A 66 LYS A 69 -1 O LYS A 69 N VAL A 36 SHEET 1 AA3 2 ILE A 72 GLU A 73 0 SHEET 2 AA3 2 ILE A 76 VAL A 77 -1 O ILE A 76 N GLU A 73 SHEET 1 AA4 3 TYR A 170 ALA A 171 0 SHEET 2 AA4 3 SER A 161 TYR A 167 -1 N TYR A 167 O TYR A 170 SHEET 3 AA4 3 MET A 177 LEU A 179 -1 O MET A 177 N THR A 163 SHEET 1 AA5 5 TYR A 170 ALA A 171 0 SHEET 2 AA5 5 SER A 161 TYR A 167 -1 N TYR A 167 O TYR A 170 SHEET 3 AA5 5 GLY A 151 SER A 156 -1 N VAL A 153 O VAL A 164 SHEET 4 AA5 5 ILE A 298 SER A 301 1 O VAL A 299 N ILE A 152 SHEET 5 AA5 5 VAL A 330 VAL A 331 1 O VAL A 331 N ILE A 298 SHEET 1 AA6 2 LYS A 239 GLU A 242 0 SHEET 2 AA6 2 ILE A 248 VAL A 251 -1 O ILE A 249 N TYR A 241 SHEET 1 AA7 5 ASP G 26 PRO G 29 0 SHEET 2 AA7 5 GLY G 16 GLU G 23 -1 N ARG G 21 O VAL G 28 SHEET 3 AA7 5 ALA G 43 GLN G 51 -1 O THR G 49 N GLY G 16 SHEET 4 AA7 5 LEU G 57 LEU G 65 -1 O HIS G 62 N ILE G 46 SHEET 5 AA7 5 ALA G 92 VAL G 98 1 O VAL G 93 N LEU G 61 SHEET 1 AA8 2 ASP G 37 PHE G 39 0 SHEET 2 AA8 2 LYS G 115 LYS G 117 1 O LYS G 115 N PHE G 38 LINK OD1 ASP A 155 K K A 404 1555 1555 2.95 LINK O VAL A 160 K K A 404 1555 1555 2.80 LINK OE1 GLU A 168 CA CA G 202 1555 1555 2.63 LINK O THR A 319 K K A 406 1555 1555 2.71 LINK O THR A 320 K K A 406 1555 1555 3.00 LINK O ALA A 322 K K A 406 1555 1555 2.68 LINK OG SER A 324 K K A 406 1555 1555 3.30 LINK O3B ADP A 401 MG MG A 403 1555 1555 2.05 LINK MG MG A 403 O HOH A 518 1555 1555 2.17 LINK MG MG A 403 O HOH A 524 1555 1555 2.28 LINK MG MG A 403 O HOH A 570 1555 1555 2.15 LINK MG MG A 403 O HOH A 643 1555 1555 2.10 LINK K K A 404 O HOH A 518 1555 1555 3.35 LINK K K A 404 O HOH A 552 1555 1555 2.79 LINK O HOH A 630 CA CA G 202 1555 1555 2.22 LINK O GLY G 41 CA CA G 201 1555 1555 2.33 LINK OD1 ASP G 42 CA CA G 201 1555 1555 2.26 LINK OE1 GLU G 73 CA CA G 201 1555 1555 2.51 LINK OE2 GLU G 73 CA CA G 201 1555 1555 2.40 LINK OD1 ASP G 85 CA CA G 202 1555 1555 2.96 LINK OD2 ASP G 85 CA CA G 202 1555 1555 2.41 LINK O GLY G 90 CA CA G 202 1555 1555 2.75 LINK O ALA G 92 CA CA G 202 1555 1555 2.34 LINK O VAL G 121 CA CA G 201 1555 1555 2.38 LINK CA CA G 201 O HOH G 353 1555 1555 2.30 LINK CA CA G 201 O HOH G 359 1555 1555 2.49 LINK CA CA G 202 O HOH G 313 1555 1555 2.48 SITE 1 AC1 23 GLY A 14 SER A 15 GLY A 16 ASN A 17 SITE 2 AC1 23 LYS A 19 GLY A 157 ASP A 158 GLY A 183 SITE 3 AC1 23 ARG A 211 LYS A 214 GLU A 215 GLY A 302 SITE 4 AC1 23 GLY A 303 THR A 304 MET A 306 TYR A 307 SITE 5 AC1 23 LYS A 337 AF3 A 402 MG A 403 HOH A 522 SITE 6 AC1 23 HOH A 535 HOH A 553 HOH A 570 SITE 1 AC2 13 SER A 15 GLY A 75 GLY A 157 ASP A 158 SITE 2 AC2 13 GLY A 159 VAL A 160 ADP A 401 MG A 403 SITE 3 AC2 13 K A 404 HOH A 518 HOH A 570 HOH A 643 SITE 4 AC2 13 HOH A 658 SITE 1 AC3 6 ADP A 401 AF3 A 402 HOH A 518 HOH A 524 SITE 2 AC3 6 HOH A 570 HOH A 643 SITE 1 AC4 5 ASP A 155 GLY A 157 VAL A 160 AF3 A 402 SITE 2 AC4 5 HOH A 552 SITE 1 AC5 1 GLU A 308 SITE 1 AC6 4 THR A 319 THR A 320 ALA A 322 SER A 324 SITE 1 AC7 6 GLY G 41 ASP G 42 GLU G 73 VAL G 121 SITE 2 AC7 6 HOH G 353 HOH G 359 SITE 1 AC8 6 GLU A 168 HOH A 630 ASP G 85 GLY G 90 SITE 2 AC8 6 ALA G 92 HOH G 313 CRYST1 68.610 71.330 109.250 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014575 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009153 0.00000