HEADER LIPID TRANSPORT 12-NOV-18 6I4Y TITLE X-RAY STRUCTURE OF THE HUMAN MITOCHONDRIAL PRELID3B-TRIAP1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE TRANSPORT SYSTEM, SUBSTRATE-BINDING PROTEIN,TP53- COMPND 3 REGULATED INHIBITOR OF APOPTOSIS 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PROTEIN 15E1.1,WF-1,P53-INDUCIBLE CELL-SURVIVAL FACTOR, COMPND 6 P53CSV; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PRELI DOMAIN CONTAINING PROTEIN 3B; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: PROTEIN SLOWMO HOMOLOG 2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 562, 9606; SOURCE 5 GENE: MALE, NCTC8450_00456, NCTC9775_03059, TRIAP1, 15E1.1, HSPC132; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: SHUFFLE; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: PRELID3B, C20ORF45, SLMO2, CGI-107; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MITOCHONDRIAL LIPID TRANSPORT, COMPLEX, PHOSPHOLIPID TRANSPORTER, KEYWDS 2 APOPTOSIS, PHOSPHATIDYLSERINE, PS TRANSPORT, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR X.MILIARA,J.-L.BERRY,R.M.L.MORGAN,S.J.MATTHEWS REVDAT 4 06-NOV-24 6I4Y 1 REMARK REVDAT 3 24-JAN-24 6I4Y 1 HETSYN REVDAT 2 29-JUL-20 6I4Y 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 FORMUL LINK SITE ATOM REVDAT 1 20-MAR-19 6I4Y 0 JRNL AUTH X.MILIARA,T.TATSUTA,J.L.BERRY,S.L.ROUSE,K.SOLAK,D.S.CHOREV, JRNL AUTH 2 D.WU,C.V.ROBINSON,S.MATTHEWS,T.LANGER JRNL TITL STRUCTURAL DETERMINANTS OF LIPID SPECIFICITY WITHIN JRNL TITL 2 UPS/PRELI LIPID TRANSFER PROTEINS. JRNL REF NAT COMMUN V. 10 1130 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30850607 JRNL DOI 10.1038/S41467-019-09089-X REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1374 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.4480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4485 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : 8.88000 REMARK 3 B33 (A**2) : -8.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.404 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.429 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.431 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.368 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4632 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4055 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6341 ; 1.468 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9399 ; 1.096 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 6.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;36.268 ;25.469 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 660 ;20.704 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5269 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 898 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2416 ; 5.518 ; 8.953 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2415 ; 5.503 ; 8.952 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3016 ; 8.563 ;13.422 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3017 ; 8.564 ;13.424 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2216 ; 5.040 ; 9.005 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2216 ; 5.039 ; 9.005 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3326 ; 8.032 ;13.415 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 19175 ;13.015 ;13.415 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 19160 ;13.007 ;13.415 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20182 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 76.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XZV REMARK 200 REMARK 200 REMARK: MULTI PLATE ELLIPSOID SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TACSIMATE (60% V/V) PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.51000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.02500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.51000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.02500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.51000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.50000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.02500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.51000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.50000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.02500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -93.02000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 133.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 430 REMARK 465 LEU A 431 REMARK 465 GLU A 432 REMARK 465 PHE A 433 REMARK 465 MET A 434 REMARK 465 GLY A 435 REMARK 465 HIS A 436 REMARK 465 GLY A 437 REMARK 465 LYS A 438 REMARK 465 GLU A 439 REMARK 465 LYS A 440 REMARK 465 PRO A 441 REMARK 465 GLU A 442 REMARK 465 ASN A 443 REMARK 465 SER A 444 REMARK 465 SER A 445 REMARK 465 MET B -12 REMARK 465 ALA B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 VAL B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 LEU B 174 REMARK 465 THR B 175 REMARK 465 ALA B 176 REMARK 465 SER B 177 REMARK 465 ALA B 178 REMARK 465 ARG B 179 REMARK 465 GLY B 180 REMARK 465 THR B 181 REMARK 465 ILE B 182 REMARK 465 ARG B 183 REMARK 465 THR B 184 REMARK 465 PRO B 185 REMARK 465 MET B 186 REMARK 465 ALA B 187 REMARK 465 ALA B 188 REMARK 465 ALA B 189 REMARK 465 ALA B 190 REMARK 465 PHE B 191 REMARK 465 ALA B 192 REMARK 465 GLU B 193 REMARK 465 LYS B 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 ILE A 33 CG1 CG2 CD1 REMARK 470 LYS A 34 CE NZ REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LEU A 122 CD1 CD2 REMARK 470 ASN A 124 CG OD1 ND2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LYS A 219 CE NZ REMARK 470 LYS A 251 CE NZ REMARK 470 LYS A 256 CE NZ REMARK 470 PHE A 258 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 295 CE NZ REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 LYS A 313 CE NZ REMARK 470 GLN A 325 CG CD OE1 NE2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 ARG A 390 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 470 LYS A 395 CG CD CE NZ REMARK 470 LYS A 398 CD CE NZ REMARK 470 LYS A 411 CG CD CE NZ REMARK 470 LYS A 422 CD CE NZ REMARK 470 GLU A 425 CG CD OE1 OE2 REMARK 470 GLU A 429 CG CD OE1 OE2 REMARK 470 LYS B 0 CG CD CE NZ REMARK 470 LYS B 2 CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ARG B 73 CZ NH1 NH2 REMARK 470 LYS B 75 CD CE NZ REMARK 470 MET B 103 CG SD CE REMARK 470 LYS B 113 CE NZ REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 VAL B 135 CG1 CG2 REMARK 470 LEU B 141 CG CD1 CD2 REMARK 470 SER B 147 OG REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 ILE B 164 CG1 CG2 CD1 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 LEU B 167 CG CD1 CD2 REMARK 470 ASN B 168 CG OD1 ND2 REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 470 ILE B 171 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 -163.75 -101.18 REMARK 500 ALA A 162 13.44 -61.04 REMARK 500 ASN A 201 22.53 -66.22 REMARK 500 ASP A 209 -161.35 -113.27 REMARK 500 PRO A 248 152.63 -44.13 REMARK 500 ASN A 272 38.53 -97.53 REMARK 500 TYR A 283 -53.03 -129.51 REMARK 500 GLN A 335 0.88 -67.72 REMARK 500 ALA A 370 48.96 -77.57 REMARK 500 LYS A 395 -71.84 -94.09 REMARK 500 MET B 1 87.17 -159.94 REMARK 500 THR B 5 137.97 -175.07 REMARK 500 ASP B 11 55.96 -94.36 REMARK 500 GLN B 23 43.71 -107.80 REMARK 500 SER B 63 -50.89 -129.04 REMARK 500 LEU B 93 105.49 -163.25 REMARK 500 LYS B 133 23.53 -144.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 305 DISTANCE = 5.87 ANGSTROMS DBREF1 6I4Y A 1 367 UNP A0A376KDN7_ECOLX DBREF2 6I4Y A A0A376KDN7 27 393 DBREF 6I4Y A 373 445 UNP O43715 TRIA1_HUMAN 4 76 DBREF 6I4Y B 1 194 UNP Q9Y3B1 PLD3B_HUMAN 1 194 SEQADV 6I4Y MET A 0 UNP A0A376KDN INITIATING METHIONINE SEQADV 6I4Y ALA A 82 UNP A0A376KDN ASP 108 CONFLICT SEQADV 6I4Y ALA A 83 UNP A0A376KDN LYS 109 CONFLICT SEQADV 6I4Y ALA A 172 UNP A0A376KDN GLU 198 CONFLICT SEQADV 6I4Y ALA A 173 UNP A0A376KDN ASN 199 CONFLICT SEQADV 6I4Y ALA A 239 UNP A0A376KDN LYS 265 CONFLICT SEQADV 6I4Y ALA A 362 UNP A0A376KDN LYS 388 CONFLICT SEQADV 6I4Y ALA A 363 UNP A0A376KDN ASP 389 CONFLICT SEQADV 6I4Y ASN A 367 UNP A0A376KDN ARG 393 CONFLICT SEQADV 6I4Y ALA A 368 UNP A0A376KDN LINKER SEQADV 6I4Y ALA A 369 UNP A0A376KDN LINKER SEQADV 6I4Y ALA A 370 UNP A0A376KDN LINKER SEQADV 6I4Y ASN A 371 UNP A0A376KDN LINKER SEQADV 6I4Y SER A 372 UNP A0A376KDN LINKER SEQADV 6I4Y MET B -12 UNP Q9Y3B1 INITIATING METHIONINE SEQADV 6I4Y ALA B -11 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y HIS B -10 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y HIS B -9 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y HIS B -8 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y HIS B -7 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y HIS B -6 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y HIS B -5 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y VAL B -4 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y ASP B -3 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y ASP B -2 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y ASP B -1 UNP Q9Y3B1 EXPRESSION TAG SEQADV 6I4Y LYS B 0 UNP Q9Y3B1 EXPRESSION TAG SEQRES 1 A 446 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 446 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 446 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 446 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 446 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 446 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 446 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 446 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 446 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 446 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 446 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 446 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 446 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 446 PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 446 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 446 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 446 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 446 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 446 ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 446 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 446 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 446 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 446 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 446 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 446 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 446 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 446 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 446 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 A 446 ALA GLN THR ASN ALA ALA ALA ASN SER VAL GLY GLU ALA SEQRES 30 A 446 CYS THR ASP MET LYS ARG GLU TYR ASP GLN CYS PHE ASN SEQRES 31 A 446 ARG TRP PHE ALA GLU LYS PHE LEU LYS GLY ASP SER SER SEQRES 32 A 446 GLY ASP PRO CYS THR ASP LEU PHE LYS ARG TYR GLN GLN SEQRES 33 A 446 CYS VAL GLN LYS ALA ILE LYS GLU LYS GLU ILE PRO ILE SEQRES 34 A 446 GLU GLY LEU GLU PHE MET GLY HIS GLY LYS GLU LYS PRO SEQRES 35 A 446 GLU ASN SER SER SEQRES 1 B 207 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP LYS SEQRES 2 B 207 MET LYS ILE TRP THR SER GLU HIS VAL PHE ASP HIS PRO SEQRES 3 B 207 TRP GLU THR VAL THR THR ALA ALA MET GLN LYS TYR PRO SEQRES 4 B 207 ASN PRO MET ASN PRO SER VAL VAL GLY VAL ASP VAL LEU SEQRES 5 B 207 ASP ARG HIS ILE ASP PRO SER GLY LYS LEU HIS SER HIS SEQRES 6 B 207 ARG LEU LEU SER THR GLU TRP GLY LEU PRO SER ILE VAL SEQRES 7 B 207 LYS SER LEU ILE GLY ALA ALA ARG THR LYS THR TYR VAL SEQRES 8 B 207 GLN GLU HIS SER VAL VAL ASP PRO VAL GLU LYS THR MET SEQRES 9 B 207 GLU LEU LYS SER THR ASN ILE SER PHE THR ASN MET VAL SEQRES 10 B 207 SER VAL ASP GLU ARG LEU ILE TYR LYS PRO HIS PRO GLN SEQRES 11 B 207 ASP PRO GLU LYS THR VAL LEU THR GLN GLU ALA ILE ILE SEQRES 12 B 207 THR VAL LYS GLY VAL SER LEU SER SER TYR LEU GLU GLY SEQRES 13 B 207 LEU MET ALA SER THR ILE SER SER ASN ALA SER LYS GLY SEQRES 14 B 207 ARG GLU ALA MET GLU TRP VAL ILE HIS LYS LEU ASN ALA SEQRES 15 B 207 GLU ILE GLU GLU LEU THR ALA SER ALA ARG GLY THR ILE SEQRES 16 B 207 ARG THR PRO MET ALA ALA ALA ALA PHE ALA GLU LYS HET GLC C 1 12 HET GLC C 2 11 HET NA B 201 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 4 NA NA 1+ FORMUL 5 HOH *15(H2 O) HELIX 1 AA1 GLY A 16 GLY A 32 1 17 HELIX 2 AA2 LYS A 42 GLY A 54 1 13 HELIX 3 AA3 ARG A 66 SER A 73 1 8 HELIX 4 AA4 ALA A 82 LEU A 89 1 8 HELIX 5 AA5 TYR A 90 VAL A 97 1 8 HELIX 6 AA6 THR A 128 GLU A 130 5 3 HELIX 7 AA7 GLU A 131 LYS A 142 1 12 HELIX 8 AA8 GLU A 153 ALA A 162 1 10 HELIX 9 AA9 ASN A 185 ASN A 201 1 17 HELIX 10 AB1 ASP A 209 GLY A 220 1 12 HELIX 11 AB2 GLY A 228 TRP A 230 5 3 HELIX 12 AB3 ALA A 231 SER A 238 1 8 HELIX 13 AB4 ASN A 272 TYR A 283 1 12 HELIX 14 AB5 THR A 286 LYS A 297 1 12 HELIX 15 AB6 LEU A 304 LYS A 313 1 10 HELIX 16 AB7 ASP A 314 GLY A 327 1 14 HELIX 17 AB8 GLN A 335 SER A 352 1 18 HELIX 18 AB9 THR A 356 ALA A 368 1 13 HELIX 19 AC1 GLY A 374 ALA A 376 5 3 HELIX 20 AC2 CYS A 377 LYS A 395 1 19 HELIX 21 AC3 CYS A 406 GLU A 425 1 20 HELIX 22 AC4 PRO B 13 GLN B 23 1 11 HELIX 23 AC5 ILE B 64 ALA B 72 1 9 HELIX 24 AC6 SER B 136 ILE B 171 1 36 SHEET 1 AA1 6 VAL A 35 GLU A 38 0 SHEET 2 AA1 6 LEU A 7 TRP A 10 1 N ILE A 9 O THR A 36 SHEET 3 AA1 6 ILE A 59 ALA A 63 1 O ILE A 59 N TRP A 10 SHEET 4 AA1 6 GLY A 260 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 AA1 6 TYR A 106 GLU A 111 -1 N ALA A 109 O LEU A 262 SHEET 6 AA1 6 ALA A 301 VAL A 302 -1 O ALA A 301 N VAL A 110 SHEET 1 AA2 2 ARG A 98 TYR A 99 0 SHEET 2 AA2 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 AA3 4 SER A 145 LEU A 147 0 SHEET 2 AA3 4 THR A 222 ASN A 227 1 O ALA A 223 N SER A 145 SHEET 3 AA3 4 SER A 114 ASN A 118 -1 N ILE A 116 O THR A 225 SHEET 4 AA3 4 TYR A 242 THR A 245 -1 O THR A 245 N LEU A 115 SHEET 1 AA4 2 LYS A 170 ALA A 172 0 SHEET 2 AA4 2 LYS A 175 ASP A 177 -1 O LYS A 175 N ALA A 172 SHEET 1 AA5 7 TRP B 4 PHE B 10 0 SHEET 2 AA5 7 ASP B 118 ILE B 129 -1 O LEU B 124 N HIS B 8 SHEET 3 AA5 7 ASP B 107 HIS B 115 -1 N LYS B 113 O VAL B 123 SHEET 4 AA5 7 THR B 90 ASN B 97 -1 N SER B 95 O GLU B 108 SHEET 5 AA5 7 LYS B 75 ASP B 85 -1 N HIS B 81 O LYS B 94 SHEET 6 AA5 7 LEU B 49 GLU B 58 -1 N THR B 57 O THR B 76 SHEET 7 AA5 7 VAL B 33 ILE B 43 -1 N HIS B 42 O HIS B 50 SSBOND 1 CYS A 377 CYS A 416 1555 1555 2.03 SSBOND 2 CYS A 387 CYS A 406 1555 1555 2.02 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.44 CISPEP 1 TYR B 25 PRO B 26 0 15.22 CRYST1 93.020 133.000 146.050 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010750 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006847 0.00000