HEADER BLOOD CLOTTING 13-NOV-18 6I58 TITLE ALLOSTERIC ACTIVATION OF HUMAN PREKALLIKREIN BY APPLE DOMAIN DISC TITLE 2 ROTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FXI,PLASMA THROMBOPLASTIN ANTECEDENT,PTA; COMPND 5 EC: 3.4.21.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS PREKALLIKREIN, ACTIVATION, HIGH MOLECULAR WEIGHT KININOGEN, FACTOR KEYWDS 2 XI, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR C.LI,M.PATHAK,K.MCCRAE,I.DREVENY,J.EMSLEY REVDAT 4 24-JAN-24 6I58 1 REMARK HETSYN REVDAT 3 29-JUL-20 6I58 1 COMPND REMARK HETNAM SSBOND REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 08-MAY-19 6I58 1 JRNL REVDAT 1 06-MAR-19 6I58 0 SPRSDE 06-MAR-19 6I58 2F83 JRNL AUTH C.LI,K.M.VOOS,M.PATHAK,G.HALL,K.R.MCCRAE,I.DREVENY,R.LI, JRNL AUTH 2 J.EMSLEY JRNL TITL PLASMA KALLIKREIN STRUCTURE REVEALS APPLE DOMAIN DISC JRNL TITL 2 ROTATED CONFORMATION COMPARED TO FACTOR XI. JRNL REF J.THROMB.HAEMOST. V. 17 759 2019 JRNL REFN ESSN 1538-7836 JRNL PMID 30801944 JRNL DOI 10.1111/JTH.14418 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.PAPAGRIGORIOU,P.A.MCEWAN,P.N.WALSH,J.EMSLEY REMARK 1 TITL CRYSTAL STRUCTURE OF THE FACTOR XI ZYMOGEN REVEALS A PATHWAY REMARK 1 TITL 2 FOR TRANSACTIVATION. REMARK 1 REF NAT. STRUCT. MOL. BIOL. V. 13 557 2006 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 16699514 REMARK 1 DOI 10.1038/NSMB1095 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 23605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2641 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1596 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4599 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.570 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.797 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4768 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4249 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6477 ; 1.770 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9884 ; 1.073 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 585 ; 7.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;35.145 ;23.900 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 774 ;19.385 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;20.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 729 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5236 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 972 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2347 ; 5.452 ; 7.240 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2346 ; 5.445 ; 7.239 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2926 ; 8.165 ;10.844 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2927 ; 8.164 ;10.846 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2420 ; 5.178 ; 7.711 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2420 ; 5.178 ; 7.711 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3551 ; 8.028 ;11.366 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5169 ;11.379 ;84.367 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5170 ;11.378 ;84.367 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.08750 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.60200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2F83 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM HEPES AND 22% (V/V) PEG REMARK 280 1000, PH 7.5, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.53000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.38000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.38000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 188.29500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.38000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.38000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.76500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.38000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.38000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 188.29500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.38000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.38000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.76500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.53000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -80.76000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 80.76000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLN A 318 REMARK 465 ALA A 319 REMARK 465 SER A 320 REMARK 465 ARG A 504 REMARK 465 LYS A 505 REMARK 465 LEU A 506 REMARK 465 ARG A 507 REMARK 465 ARG A 546 REMARK 465 GLU A 547 REMARK 465 GLY A 548 REMARK 465 GLY A 549 REMARK 465 LYS A 550 REMARK 465 ASP A 551 REMARK 465 ALA A 552 REMARK 465 CYS A 553 REMARK 465 CYS A 581 REMARK 465 ALA A 582 REMARK 465 GLN A 583 REMARK 465 ARG A 584 REMARK 465 ALA A 606 REMARK 465 VAL A 607 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 8 CG CD CE REMARK 480 LYS A 113 CG CD CE NZ REMARK 480 LYS A 230 CG CD CE NZ REMARK 480 LYS A 252 CD CE NZ REMARK 480 LYS A 255 NZ REMARK 480 LYS A 301 CE REMARK 480 ARG A 479 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 515 CG REMARK 480 LYS A 529 CB CG CD CE NZ REMARK 480 ARG A 530 CZ NH1 NH2 REMARK 480 LYS A 535 CD CE NZ REMARK 480 ARG A 586 CD NE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 90 -62.52 -97.34 REMARK 500 ALA A 91 -8.37 81.37 REMARK 500 ARG A 144 131.12 -33.88 REMARK 500 ASP A 194 -153.23 -127.15 REMARK 500 LYS A 253 138.43 -179.47 REMARK 500 VAL A 271 -49.00 -142.96 REMARK 500 ASN A 322 -134.11 48.97 REMARK 500 LYS A 325 71.49 -156.05 REMARK 500 VAL A 371 109.03 -58.04 REMARK 500 SER A 434 -35.64 -38.80 REMARK 500 LYS A 455 -62.19 -122.91 REMARK 500 ALA A 517 116.31 -162.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 391 PRO A 392 -65.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 883 DISTANCE = 6.34 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6I44 RELATED DB: PDB REMARK 900 RELATED ID: 6I4W RELATED DB: PDB DBREF 6I58 A 1 607 UNP P03951 FA11_HUMAN 19 625 SEQRES 1 A 607 GLU CYS VAL THR GLN LEU LEU LYS ASP THR CYS PHE GLU SEQRES 2 A 607 GLY GLY ASP ILE THR THR VAL PHE THR PRO SER ALA LYS SEQRES 3 A 607 TYR CYS GLN VAL VAL CYS THR TYR HIS PRO ARG CYS LEU SEQRES 4 A 607 LEU PHE THR PHE THR ALA GLU SER PRO SER GLU ASP PRO SEQRES 5 A 607 THR ARG TRP PHE THR CYS VAL LEU LYS ASP SER VAL THR SEQRES 6 A 607 GLU THR LEU PRO ARG VAL ASN ARG THR ALA ALA ILE SER SEQRES 7 A 607 GLY TYR SER PHE LYS GLN CYS SER HIS GLN ILE SER ALA SEQRES 8 A 607 CYS ASN LYS ASP ILE TYR VAL ASP LEU ASP MET LYS GLY SEQRES 9 A 607 ILE ASN TYR ASN SER SER VAL ALA LYS SER ALA GLN GLU SEQRES 10 A 607 CYS GLN GLU ARG CYS THR ASP ASP VAL HIS CYS HIS PHE SEQRES 11 A 607 PHE THR TYR ALA THR ARG GLN PHE PRO SER LEU GLU HIS SEQRES 12 A 607 ARG ASN ILE CYS LEU LEU LYS HIS THR GLN THR GLY THR SEQRES 13 A 607 PRO THR ARG ILE THR LYS LEU ASP LYS VAL VAL SER GLY SEQRES 14 A 607 PHE SER LEU LYS SER CYS ALA LEU SER ASN LEU ALA CYS SEQRES 15 A 607 ILE ARG ASP ILE PHE PRO ASN THR VAL PHE ALA ASP SER SEQRES 16 A 607 ASN ILE ASP SER VAL MET ALA PRO ASP ALA PHE VAL CYS SEQRES 17 A 607 GLY ARG ILE CYS THR HIS HIS PRO GLY CYS LEU PHE PHE SEQRES 18 A 607 THR PHE PHE SER GLN GLU TRP PRO LYS GLU SER GLN ARG SEQRES 19 A 607 ASN LEU CYS LEU LEU LYS THR SER GLU SER GLY LEU PRO SEQRES 20 A 607 SER THR ARG ILE LYS LYS SER LYS ALA LEU SER GLY PHE SEQRES 21 A 607 SER LEU GLN SER CYS ARG HIS SER ILE PRO VAL PHE CYS SEQRES 22 A 607 HIS SER SER PHE TYR HIS ASP THR ASP PHE LEU GLY GLU SEQRES 23 A 607 GLU LEU ASP ILE VAL ALA ALA LYS SER HIS GLU ALA CYS SEQRES 24 A 607 GLN LYS LEU CYS THR ASN ALA VAL ARG CYS GLN PHE PHE SEQRES 25 A 607 THR TYR THR PRO ALA GLN ALA SER CYS ASN GLU GLY LYS SEQRES 26 A 607 GLY LYS CYS TYR LEU LYS LEU SER SER ASN GLY SER PRO SEQRES 27 A 607 THR LYS ILE LEU HIS GLY ARG GLY GLY ILE SER GLY TYR SEQRES 28 A 607 THR LEU ARG LEU CYS LYS MET ASP ASN GLU CYS THR THR SEQRES 29 A 607 LYS ILE LYS PRO ARG ILE VAL GLY GLY THR ALA SER VAL SEQRES 30 A 607 ARG GLY GLU TRP PRO TRP GLN VAL THR LEU HIS THR THR SEQRES 31 A 607 SER PRO THR GLN ARG HIS LEU CYS GLY GLY SER ILE ILE SEQRES 32 A 607 GLY ASN GLN TRP ILE LEU THR ALA ALA HIS CYS PHE TYR SEQRES 33 A 607 GLY VAL GLU SER PRO LYS ILE LEU ARG VAL TYR SER GLY SEQRES 34 A 607 ILE LEU ASN GLN SER GLU ILE LYS GLU ASP THR SER PHE SEQRES 35 A 607 PHE GLY VAL GLN GLU ILE ILE ILE HIS ASP GLN TYR LYS SEQRES 36 A 607 MET ALA GLU SER GLY TYR ASP ILE ALA LEU LEU LYS LEU SEQRES 37 A 607 GLU THR THR VAL ASN TYR THR ASP SER GLN ARG PRO ILE SEQRES 38 A 607 CYS LEU PRO SER LYS GLY ASP ARG ASN VAL ILE TYR THR SEQRES 39 A 607 ASP CYS TRP VAL THR GLY TRP GLY TYR ARG LYS LEU ARG SEQRES 40 A 607 ASP LYS ILE GLN ASN THR LEU GLN LYS ALA LYS ILE PRO SEQRES 41 A 607 LEU VAL THR ASN GLU GLU CYS GLN LYS ARG TYR ARG GLY SEQRES 42 A 607 HIS LYS ILE THR HIS LYS MET ILE CYS ALA GLY TYR ARG SEQRES 43 A 607 GLU GLY GLY LYS ASP ALA CYS LYS GLY ASP SER GLY GLY SEQRES 44 A 607 PRO LEU SER CYS LYS HIS ASN GLU VAL TRP HIS LEU VAL SEQRES 45 A 607 GLY ILE THR SER TRP GLY GLU GLY CYS ALA GLN ARG GLU SEQRES 46 A 607 ARG PRO GLY VAL TYR THR ASN VAL VAL GLU TYR VAL ASP SEQRES 47 A 607 TRP ILE LEU GLU LYS THR GLN ALA VAL HET NAG B 1 14 HET NAG B 2 14 HET CL A 701 1 HET CL A 702 1 HET CL A 703 1 HET CL A 704 1 HET CL A 705 1 HET PEG A 706 7 HET NAG A 707 14 HET NAG A 708 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 3 CL 5(CL 1-) FORMUL 8 PEG C4 H10 O3 FORMUL 11 HOH *83(H2 O) HELIX 1 AA1 SER A 24 HIS A 35 1 12 HELIX 2 AA2 SER A 114 ASP A 124 1 11 HELIX 3 AA3 LEU A 172 ALA A 176 5 5 HELIX 4 AA4 ASP A 204 HIS A 215 1 12 HELIX 5 AA5 LYS A 230 ARG A 234 5 5 HELIX 6 AA6 CYS A 265 ILE A 269 5 5 HELIX 7 AA7 SER A 295 ASN A 305 1 11 HELIX 8 AA8 LEU A 355 ASP A 359 5 5 HELIX 9 AA9 ASN A 360 THR A 364 5 5 HELIX 10 AB1 ALA A 411 TYR A 416 5 6 HELIX 11 AB2 SER A 420 LYS A 422 5 3 HELIX 12 AB3 ASN A 432 ILE A 436 5 5 HELIX 13 AB4 SER A 485 ARG A 489 5 5 HELIX 14 AB5 THR A 523 LYS A 529 1 7 HELIX 15 AB6 TYR A 596 GLN A 605 1 10 SHEET 1 AA1 2 THR A 10 PHE A 12 0 SHEET 2 AA1 2 ARG A 70 ASN A 72 -1 O VAL A 71 N CYS A 11 SHEET 1 AA2 4 ASP A 16 PHE A 21 0 SHEET 2 AA2 4 THR A 57 LYS A 61 -1 O CYS A 58 N VAL A 20 SHEET 3 AA2 4 LEU A 40 THR A 44 -1 N LEU A 40 O LYS A 61 SHEET 4 AA2 4 ALA A 76 TYR A 80 -1 O ILE A 77 N PHE A 43 SHEET 1 AA3 5 ILE A 96 LYS A 103 0 SHEET 2 AA3 5 ARG A 159 PHE A 170 -1 O THR A 161 N ASP A 101 SHEET 3 AA3 5 PHE A 130 ALA A 134 -1 N TYR A 133 O VAL A 167 SHEET 4 AA3 5 ILE A 146 HIS A 151 -1 O ILE A 146 N ALA A 134 SHEET 5 AA3 5 ILE A 105 VAL A 111 -1 N SER A 110 O CYS A 147 SHEET 1 AA4 5 PHE A 187 VAL A 191 0 SHEET 2 AA4 5 ILE A 251 PHE A 260 -1 O SER A 258 N PHE A 187 SHEET 3 AA4 5 PHE A 220 PHE A 224 -1 N PHE A 223 O LEU A 257 SHEET 4 AA4 5 LEU A 236 THR A 241 -1 O LYS A 240 N PHE A 220 SHEET 5 AA4 5 SER A 195 MET A 201 -1 N VAL A 200 O CYS A 237 SHEET 1 AA5 5 TYR A 278 LEU A 284 0 SHEET 2 AA5 5 LYS A 340 TYR A 351 -1 O LEU A 342 N ASP A 282 SHEET 3 AA5 5 PHE A 311 THR A 315 -1 N TYR A 314 O ILE A 348 SHEET 4 AA5 5 GLY A 326 LEU A 332 -1 O LYS A 327 N THR A 315 SHEET 5 AA5 5 GLU A 286 ALA A 293 -1 N LEU A 288 O LEU A 330 SHEET 1 AA6 7 GLN A 384 THR A 389 0 SHEET 2 AA6 7 ARG A 395 ILE A 402 -1 O LEU A 397 N LEU A 387 SHEET 3 AA6 7 TRP A 407 THR A 410 -1 O LEU A 409 N SER A 401 SHEET 4 AA6 7 ALA A 464 LEU A 468 -1 O ALA A 464 N THR A 410 SHEET 5 AA6 7 PHE A 443 ILE A 450 -1 N GLN A 446 O LYS A 467 SHEET 6 AA6 7 LEU A 424 SER A 428 -1 N VAL A 426 O PHE A 443 SHEET 7 AA6 7 GLN A 384 THR A 389 -1 N HIS A 388 O ARG A 425 SHEET 1 AA7 7 GLN A 515 LYS A 518 0 SHEET 2 AA7 7 CYS A 496 GLY A 500 -1 N GLY A 500 O GLN A 515 SHEET 3 AA7 7 PRO A 560 HIS A 565 -1 O SER A 562 N TRP A 497 SHEET 4 AA7 7 VAL A 568 TRP A 577 -1 O GLY A 573 N LEU A 561 SHEET 5 AA7 7 GLY A 588 ASN A 592 -1 O THR A 591 N ILE A 574 SHEET 6 AA7 7 MET A 540 ALA A 543 -1 N ILE A 541 O TYR A 590 SHEET 7 AA7 7 LEU A 521 VAL A 522 -1 N VAL A 522 O CYS A 542 SSBOND 1 CYS A 2 CYS A 85 1555 1555 2.04 SSBOND 2 CYS A 28 CYS A 58 1555 1555 2.04 SSBOND 3 CYS A 32 CYS A 38 1555 1555 2.14 SSBOND 4 CYS A 92 CYS A 175 1555 1555 1.94 SSBOND 5 CYS A 118 CYS A 147 1555 1555 2.04 SSBOND 6 CYS A 122 CYS A 128 1555 1555 2.10 SSBOND 7 CYS A 182 CYS A 265 1555 1555 2.04 SSBOND 8 CYS A 208 CYS A 237 1555 1555 2.06 SSBOND 9 CYS A 212 CYS A 218 1555 1555 2.13 SSBOND 10 CYS A 273 CYS A 356 1555 1555 2.04 SSBOND 11 CYS A 299 CYS A 328 1555 1555 2.07 SSBOND 12 CYS A 303 CYS A 309 1555 1555 2.09 SSBOND 13 CYS A 321 CYS A 321 1555 7465 2.77 SSBOND 14 CYS A 362 CYS A 482 1555 1555 2.08 SSBOND 15 CYS A 398 CYS A 414 1555 1555 2.02 SSBOND 16 CYS A 496 CYS A 563 1555 1555 2.09 SSBOND 17 CYS A 527 CYS A 542 1555 1555 2.07 LINK ND2 ASN A 72 C1 NAG A 707 1555 1555 1.46 LINK ND2 ASN A 108 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 432 C1 NAG A 708 1555 1555 1.42 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 CRYST1 80.760 80.760 251.060 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003983 0.00000