HEADER TRANSLATION 13-NOV-18 6I5M TITLE GAMMA SUBUNIT OF THE TRANSLATION INITIATION FACTOR 2 FROM SULFOLOBUS TITLE 2 SOLFATARICUS IN COMPLEX WITH GDP AND FORMATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AIF2-GAMMA,EIF-2-GAMMA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: EIF2G, SSO0412; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GAMMA SUBUNIT, G-PROTEIN, TRANSLATION, TRANSLATION INITIATION, KEYWDS 2 BIOSYNTHESIS, RNA-BINDING, GTP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 3 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.KRAVCHENKO,O.NIKONOV,A.GABDULKHAKOV,E.STOLBOUSHKINA,V.ARKHIPOVA, AUTHOR 2 M.GARBER,S.NIKONOV REVDAT 3 24-JAN-24 6I5M 1 LINK REVDAT 2 24-APR-19 6I5M 1 JRNL REVDAT 1 02-JAN-19 6I5M 0 JRNL AUTH O.NIKONOV,O.KRAVCHENKO,N.NEVSKAYA,E.STOLBOUSHKINA,M.GARBER, JRNL AUTH 2 S.NIKONOV JRNL TITL THE THIRD STRUCTURAL SWITCH IN THE ARCHAEAL TRANSLATION JRNL TITL 2 INITIATION FACTOR 2 (AIF2) MOLECULE AND ITS POSSIBLE ROLE IN JRNL TITL 3 THE INITIATION OF GTP HYDROLYSIS AND THE REMOVAL OF AIF2 JRNL TITL 4 FROM THE RIBOSOME. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 392 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30988256 JRNL DOI 10.1107/S2059798319002304 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 31875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 5.4810 0.92 2553 131 0.1547 0.1859 REMARK 3 2 5.4810 - 4.3562 0.98 2638 133 0.1313 0.1831 REMARK 3 3 4.3562 - 3.8072 0.99 2606 149 0.1379 0.1580 REMARK 3 4 3.8072 - 3.4599 0.97 2579 118 0.1667 0.2340 REMARK 3 5 3.4599 - 3.2123 0.97 2539 150 0.1902 0.2535 REMARK 3 6 3.2123 - 3.0232 0.96 2543 131 0.2046 0.2547 REMARK 3 7 3.0232 - 2.8719 0.95 2508 126 0.2114 0.2895 REMARK 3 8 2.8719 - 2.7470 0.95 2474 147 0.2066 0.2662 REMARK 3 9 2.7470 - 2.6414 0.94 2461 151 0.2025 0.2908 REMARK 3 10 2.6414 - 2.5503 0.94 2460 137 0.2109 0.2855 REMARK 3 11 2.5503 - 2.4706 0.93 2445 126 0.2155 0.2456 REMARK 3 12 2.4706 - 2.4000 0.94 2448 122 0.2347 0.3097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3337 REMARK 3 ANGLE : 0.986 4498 REMARK 3 CHIRALITY : 0.060 522 REMARK 3 PLANARITY : 0.006 561 REMARK 3 DIHEDRAL : 15.360 1252 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 27.243 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.910 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08370 REMARK 200 FOR THE DATA SET : 10.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.81 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33620 REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4M4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2,85MM GTP, 1,33M SODIUM FORMIATE, REMARK 280 37MM SODIUM CACODYLATE PH 6.5, 13 MM TRISHCL PH 7.5, 130 MM NACL, REMARK 280 1,3 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 71.07150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.03315 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 72.86233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 71.07150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.03315 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 72.86233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 71.07150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.03315 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.86233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 71.07150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.03315 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 72.86233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 71.07150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.03315 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 72.86233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 71.07150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.03315 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 72.86233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 82.06630 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 145.72467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 82.06630 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 145.72467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 82.06630 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 145.72467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 82.06630 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 145.72467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 82.06630 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 145.72467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 82.06630 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 145.72467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 520 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 757 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 780 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 896 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 987 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1007 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1015 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1032 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1049 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1050 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 150 31.53 72.18 REMARK 500 LEU A 209 4.46 -69.32 REMARK 500 ASP A 250 -3.71 78.90 REMARK 500 THR A 274 -160.24 -161.34 REMARK 500 LYS A 354 -0.51 78.10 REMARK 500 LYS A 375 -123.72 56.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1049 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 8.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 519 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 23 OG1 REMARK 620 2 GDP A 501 O1B 91.4 REMARK 620 3 HOH A 610 O 169.0 89.6 REMARK 620 4 HOH A 619 O 91.1 88.4 99.8 REMARK 620 5 HOH A 621 O 86.2 80.6 83.1 168.6 REMARK 620 6 HOH A 812 O 89.1 171.1 88.2 100.5 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 521 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 151 O REMARK 620 2 VAL A 154 O 91.1 REMARK 620 3 GDP A 501 O3' 16.2 85.6 REMARK 620 4 HOH A 645 O 174.8 93.8 162.8 REMARK 620 5 HOH A 855 O 93.1 165.7 101.9 82.7 REMARK 620 6 HOH A 919 O 96.4 94.1 111.9 85.3 71.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 520 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 896 O REMARK 620 2 HOH A 896 O 0.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 521 DBREF 6I5M A 1 415 UNP Q980A5 IF2G_SULSO 1 415 SEQRES 1 A 415 MET ALA TRP PRO LYS VAL GLN PRO GLU VAL ASN ILE GLY SEQRES 2 A 415 VAL VAL GLY HIS VAL ASP HIS GLY LYS THR THR LEU VAL SEQRES 3 A 415 GLN ALA ILE THR GLY ILE TRP THR SER LYS HIS SER GLU SEQRES 4 A 415 GLU LEU LYS ARG GLY MET THR ILE LYS LEU GLY TYR ALA SEQRES 5 A 415 GLU THR ASN ILE GLY VAL CYS GLU SER CYS LYS LYS PRO SEQRES 6 A 415 GLU ALA TYR VAL THR GLU PRO SER CYS LYS SER CYS GLY SEQRES 7 A 415 SER ASP ASP GLU PRO LYS PHE LEU ARG ARG ILE SER PHE SEQRES 8 A 415 ILE ASP ALA PRO GLY HIS GLU VAL LEU MET ALA THR MET SEQRES 9 A 415 LEU SER GLY ALA ALA LEU MET ASP GLY ALA ILE LEU VAL SEQRES 10 A 415 VAL ALA ALA ASN GLU PRO PHE PRO GLN PRO GLN THR ARG SEQRES 11 A 415 GLU HIS PHE VAL ALA LEU GLY ILE ILE GLY VAL LYS ASN SEQRES 12 A 415 LEU ILE ILE VAL GLN ASN LYS VAL ASP VAL VAL SER LYS SEQRES 13 A 415 GLU GLU ALA LEU SER GLN TYR ARG GLN ILE LYS GLN PHE SEQRES 14 A 415 THR LYS GLY THR TRP ALA GLU ASN VAL PRO ILE ILE PRO SEQRES 15 A 415 VAL SER ALA LEU HIS LYS ILE ASN ILE ASP SER LEU ILE SEQRES 16 A 415 GLU GLY ILE GLU GLU TYR ILE LYS THR PRO TYR ARG ASP SEQRES 17 A 415 LEU SER GLN LYS PRO VAL MET LEU VAL ILE ARG SER PHE SEQRES 18 A 415 ASP VAL ASN LYS PRO GLY THR GLN PHE ASN GLU LEU LYS SEQRES 19 A 415 GLY GLY VAL ILE GLY GLY SER ILE ILE GLN GLY LEU PHE SEQRES 20 A 415 LYS VAL ASP GLN GLU ILE LYS VAL LEU PRO GLY LEU ARG SEQRES 21 A 415 VAL GLU LYS GLN GLY LYS VAL SER TYR GLU PRO ILE PHE SEQRES 22 A 415 THR LYS ILE SER SER ILE ARG PHE GLY ASP GLU GLU PHE SEQRES 23 A 415 LYS GLU ALA LYS PRO GLY GLY LEU VAL ALA ILE GLY THR SEQRES 24 A 415 TYR LEU ASP PRO SER LEU THR LYS ALA ASP ASN LEU LEU SEQRES 25 A 415 GLY SER ILE ILE THR LEU ALA ASP ALA GLU VAL PRO VAL SEQRES 26 A 415 LEU TRP ASN ILE ARG ILE LYS TYR ASN LEU LEU GLU ARG SEQRES 27 A 415 VAL VAL GLY ALA LYS GLU MET LEU LYS VAL ASP PRO ILE SEQRES 28 A 415 ARG ALA LYS GLU THR LEU MET LEU SER VAL GLY SER SER SEQRES 29 A 415 THR THR LEU GLY ILE VAL THR SER VAL LYS LYS ASP GLU SEQRES 30 A 415 ILE GLU VAL GLU LEU ARG ARG PRO VAL ALA VAL TRP SER SEQRES 31 A 415 ASN ASN ILE ARG THR VAL ILE SER ARG GLN ILE ALA GLY SEQRES 32 A 415 ARG TRP ARG MET ILE GLY TRP GLY LEU VAL GLU ILE HET GDP A 501 28 HET FMT A 502 3 HET FMT A 503 3 HET FMT A 504 3 HET FMT A 505 3 HET FMT A 506 3 HET FMT A 507 3 HET FMT A 508 3 HET FMT A 509 3 HET FMT A 510 3 HET FMT A 511 3 HET FMT A 512 3 HET FMT A 513 3 HET FMT A 514 3 HET FMT A 515 3 HET FMT A 516 3 HET FMT A 517 3 HET FMT A 518 3 HET MG A 519 1 HET MG A 520 1 HET NA A 521 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM FMT FORMIC ACID HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 FMT 17(C H2 O2) FORMUL 20 MG 2(MG 2+) FORMUL 22 NA NA 1+ FORMUL 23 HOH *450(H2 O) HELIX 1 AA1 GLY A 21 GLY A 31 1 11 HELIX 2 AA2 LYS A 36 GLY A 44 1 9 HELIX 3 AA3 CYS A 74 GLY A 78 5 5 HELIX 4 AA4 HIS A 97 VAL A 99 5 3 HELIX 5 AA5 LEU A 100 ALA A 109 1 10 HELIX 6 AA6 GLN A 126 GLY A 140 1 15 HELIX 7 AA7 LYS A 150 VAL A 154 5 5 HELIX 8 AA8 SER A 155 LYS A 171 1 17 HELIX 9 AA9 ASN A 190 ILE A 202 1 13 HELIX 10 AB1 ARG A 219 PHE A 221 5 3 HELIX 11 AB2 ASP A 302 LYS A 307 1 6 SHEET 1 AA1 7 TYR A 68 VAL A 69 0 SHEET 2 AA1 7 LEU A 49 VAL A 58 -1 N GLY A 57 O VAL A 69 SHEET 3 AA1 7 LYS A 84 ASP A 93 -1 O PHE A 91 N ALA A 52 SHEET 4 AA1 7 ASN A 11 VAL A 15 1 N ILE A 12 O SER A 90 SHEET 5 AA1 7 GLY A 113 ALA A 119 1 O GLY A 113 N GLY A 13 SHEET 6 AA1 7 LEU A 144 ASN A 149 1 O ASN A 149 N VAL A 118 SHEET 7 AA1 7 ILE A 180 PRO A 182 1 O ILE A 181 N ILE A 146 SHEET 1 AA2 3 TYR A 68 VAL A 69 0 SHEET 2 AA2 3 LEU A 49 VAL A 58 -1 N GLY A 57 O VAL A 69 SHEET 3 AA2 3 VAL A 223 ASN A 224 1 O ASN A 224 N LEU A 49 SHEET 1 AA3 8 LYS A 266 LYS A 275 0 SHEET 2 AA3 8 GLU A 252 LYS A 263 -1 N VAL A 261 O SER A 268 SHEET 3 AA3 8 LEU A 311 LEU A 318 -1 O LEU A 312 N GLY A 258 SHEET 4 AA3 8 VAL A 214 VAL A 217 -1 N VAL A 217 O SER A 314 SHEET 5 AA3 8 VAL A 237 GLN A 244 -1 O SER A 241 N LEU A 216 SHEET 6 AA3 8 VAL A 295 GLY A 298 -1 O ILE A 297 N ILE A 238 SHEET 7 AA3 8 SER A 278 PHE A 281 -1 N ARG A 280 O ALA A 296 SHEET 8 AA3 8 GLU A 284 PHE A 286 -1 O PHE A 286 N ILE A 279 SHEET 1 AA4 2 PHE A 247 LYS A 248 0 SHEET 2 AA4 2 GLU A 288 ALA A 289 -1 O ALA A 289 N PHE A 247 SHEET 1 AA5 7 VAL A 325 LEU A 335 0 SHEET 2 AA5 7 GLU A 377 ALA A 387 -1 O LEU A 382 N TRP A 327 SHEET 3 AA5 7 SER A 364 LYS A 374 -1 N LYS A 374 O GLU A 377 SHEET 4 AA5 7 THR A 356 VAL A 361 -1 N LEU A 359 O THR A 366 SHEET 5 AA5 7 ARG A 394 ILE A 401 -1 O SER A 398 N MET A 358 SHEET 6 AA5 7 ARG A 404 GLU A 414 -1 O GLY A 409 N ILE A 397 SHEET 7 AA5 7 VAL A 325 LEU A 335 -1 N ARG A 330 O GLU A 414 SSBOND 1 CYS A 59 CYS A 74 1555 1555 2.06 SSBOND 2 CYS A 62 CYS A 77 1555 1555 2.07 LINK OG1 THR A 23 MG MG A 519 1555 1555 1.98 LINK O VAL A 151 NA NA A 521 1555 1555 2.28 LINK O VAL A 154 NA NA A 521 1555 1555 2.19 LINK O1B GDP A 501 MG MG A 519 1555 1555 2.14 LINK O3' GDP A 501 NA NA A 521 1555 3555 2.45 LINK MG MG A 519 O HOH A 610 1555 3555 2.04 LINK MG MG A 519 O HOH A 619 1555 1555 2.17 LINK MG MG A 519 O HOH A 621 1555 1555 2.18 LINK MG MG A 519 O HOH A 812 1555 1555 2.22 LINK MG MG A 520 O HOH A 896 1555 1555 2.05 LINK MG MG A 520 O HOH A 896 1555 2555 2.05 LINK NA NA A 521 O HOH A 645 1555 2555 2.42 LINK NA NA A 521 O HOH A 855 1555 2555 2.60 LINK NA NA A 521 O HOH A 919 1555 1555 2.36 CISPEP 1 LYS A 64 PRO A 65 0 6.14 CISPEP 2 PHE A 124 PRO A 125 0 -1.57 CISPEP 3 LEU A 256 PRO A 257 0 -7.22 SITE 1 AC1 27 ASP A 19 HIS A 20 GLY A 21 LYS A 22 SITE 2 AC1 27 THR A 23 THR A 24 ASN A 149 LYS A 150 SITE 3 AC1 27 VAL A 151 ASP A 152 VAL A 153 LYS A 156 SITE 4 AC1 27 SER A 184 ALA A 185 LEU A 186 FMT A 507 SITE 5 AC1 27 MG A 519 NA A 521 HOH A 610 HOH A 616 SITE 6 AC1 27 HOH A 619 HOH A 621 HOH A 689 HOH A 764 SITE 7 AC1 27 HOH A 774 HOH A 855 HOH A 865 SITE 1 AC2 6 MET A 45 THR A 46 GLY A 96 HIS A 97 SITE 2 AC2 6 HOH A 610 HOH A 616 SITE 1 AC3 7 SER A 314 VAL A 361 SER A 364 VAL A 386 SITE 2 AC3 7 ALA A 387 HOH A 618 HOH A 637 SITE 1 AC4 5 VAL A 217 GLY A 313 SER A 363 HOH A 601 SITE 2 AC4 5 HOH A 631 SITE 1 AC5 3 LEU A 336 GLU A 337 ARG A 338 SITE 1 AC6 6 ARG A 219 SER A 220 THR A 306 LYS A 307 SITE 2 AC6 6 HOH A 630 HOH A 675 SITE 1 AC7 5 ASN A 121 LYS A 150 ASP A 152 GDP A 501 SITE 2 AC7 5 HOH A 705 SITE 1 AC8 1 HIS A 187 SITE 1 AC9 6 TYR A 333 LEU A 335 PRO A 350 ILE A 351 SITE 2 AC9 6 HOH A 676 HOH A 809 SITE 1 AD1 3 LEU A 367 ARG A 383 ARG A 384 SITE 1 AD2 5 GLU A 344 ALA A 402 HOH A 684 HOH A 755 SITE 2 AD2 5 HOH A 967 SITE 1 AD3 2 HOH A 762 HOH A 835 SITE 1 AD4 2 GLU A 158 HOH A 837 SITE 1 AD5 4 ALA A 342 LYS A 343 GLU A 344 HOH A 625 SITE 1 AD6 4 LYS A 42 TYR A 163 PRO A 179 ILE A 180 SITE 1 AD7 5 LYS A 347 VAL A 348 ASP A 349 ARG A 399 SITE 2 AD7 5 HOH A 684 SITE 1 AD8 6 LYS A 36 HIS A 37 SER A 38 ASN A 190 SITE 2 AD8 6 SER A 193 HOH A 693 SITE 1 AD9 6 THR A 23 GDP A 501 HOH A 610 HOH A 619 SITE 2 AD9 6 HOH A 621 HOH A 812 SITE 1 AE1 2 HIS A 187 HOH A 896 SITE 1 AE2 6 VAL A 151 VAL A 154 GDP A 501 HOH A 645 SITE 2 AE2 6 HOH A 855 HOH A 919 CRYST1 142.143 142.143 218.587 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007035 0.004062 0.000000 0.00000 SCALE2 0.000000 0.008124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004575 0.00000