HEADER LIGASE 15-NOV-18 6I5Y TITLE CRYSTAL STRUCTURE OF E. COLI TYRRS IN COMPLEX WITH 5'-O-(N-L-TYROSYL) TITLE 2 SULFAMOYL-ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TYROSYL-TRNA SYNTHETASE,TYRRS; COMPND 5 EC: 6.1.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 GENE: TYRS, ECBD_2006; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETRUK KEYWDS PROTEIN-INHIBITOR COMPLEX, ROSSMANN FOLD, TRNA AMINOACYLATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DE GRAEF,L.PANG,S.V.STRELKOV,S.D.WEEKS REVDAT 4 24-JAN-24 6I5Y 1 REMARK REVDAT 3 01-MAY-19 6I5Y 1 REMARK REVDAT 2 24-APR-19 6I5Y 1 JRNL REVDAT 1 17-APR-19 6I5Y 0 JRNL AUTH M.NAUTIYAL,S.DE GRAEF,L.PANG,B.GADAKH,S.V.STRELKOV, JRNL AUTH 2 S.D.WEEKS,A.VAN AERSCHOT JRNL TITL COMPARATIVE ANALYSIS OF PYRIMIDINE SUBSTITUTED JRNL TITL 2 AMINOACYL-SULFAMOYL NUCLEOSIDES AS POTENTIAL INHIBITORS JRNL TITL 3 TARGETING CLASS I AMINOACYL-TRNA SYNTHETASES. JRNL REF EUR.J.MED.CHEM. V. 173 154 2019 JRNL REFN ISSN 0223-5234 JRNL PMID 30995568 JRNL DOI 10.1016/J.EJMECH.2019.04.003 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 74654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2239 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.62 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5473 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2085 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5306 REMARK 3 BIN R VALUE (WORKING SET) : 0.2077 REMARK 3 BIN FREE R VALUE : 0.2352 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.05 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 167 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6414 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 733 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.86060 REMARK 3 B22 (A**2) : -9.45500 REMARK 3 B33 (A**2) : 2.59440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.15040 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.154 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.146 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.135 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6631 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8986 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2282 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 188 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1005 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6631 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 854 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8267 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.24 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.86 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|5 - B|235 } REMARK 3 ORIGIN FOR THE GROUP (A): -38.6816 1.7356 -9.3766 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.1324 REMARK 3 T33: 0.2072 T12: 0.0023 REMARK 3 T13: 0.0034 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.9075 L22: 0.6234 REMARK 3 L33: 2.3719 L12: -0.0151 REMARK 3 L13: 0.6559 L23: 0.0555 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: 0.0397 S13: -0.0338 REMARK 3 S21: 0.0162 S22: -0.0061 S23: -0.0061 REMARK 3 S31: -0.0699 S32: -0.0398 S33: 0.0387 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|236 - B|329 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.2861 7.6306 8.0907 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.2152 REMARK 3 T33: 0.2103 T12: -0.0172 REMARK 3 T13: -0.0387 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.9427 L22: 1.2859 REMARK 3 L33: 2.2980 L12: -0.8211 REMARK 3 L13: -0.0463 L23: 0.3436 REMARK 3 S TENSOR REMARK 3 S11: -0.1196 S12: -0.1959 S13: 0.1931 REMARK 3 S21: 0.0604 S22: 0.0224 S23: -0.1699 REMARK 3 S31: -0.1911 S32: 0.2936 S33: 0.0972 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|330 - B|424 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.4095 4.5751 -2.7002 REMARK 3 T TENSOR REMARK 3 T11: 0.2718 T22: 0.3668 REMARK 3 T33: 0.3653 T12: 0.0325 REMARK 3 T13: 0.0393 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 7.3941 L22: 0.3799 REMARK 3 L33: 1.7425 L12: 0.4921 REMARK 3 L13: -1.7471 L23: 0.2621 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: -0.2090 S13: 0.2080 REMARK 3 S21: 0.0425 S22: 0.1533 S23: -0.0053 REMARK 3 S31: -0.1432 S32: 0.1547 S33: -0.2205 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|5 - A|191 } REMARK 3 ORIGIN FOR THE GROUP (A): -48.6650 0.5854 -45.0727 REMARK 3 T TENSOR REMARK 3 T11: 0.2026 T22: 0.3041 REMARK 3 T33: 0.1986 T12: -0.0100 REMARK 3 T13: 0.0088 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.3706 L22: 0.8553 REMARK 3 L33: 2.2205 L12: -0.0963 REMARK 3 L13: 0.7730 L23: -0.3271 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.2291 S13: 0.0154 REMARK 3 S21: -0.0479 S22: 0.0285 S23: 0.0397 REMARK 3 S31: 0.0216 S32: -0.0322 S33: -0.0288 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|192 - A|235 } REMARK 3 ORIGIN FOR THE GROUP (A): -44.2223 6.7268 -48.4737 REMARK 3 T TENSOR REMARK 3 T11: 0.2466 T22: 0.3585 REMARK 3 T33: 0.2421 T12: 0.0041 REMARK 3 T13: -0.0104 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.2385 L22: 1.1110 REMARK 3 L33: 0.9077 L12: 0.2276 REMARK 3 L13: -0.2399 L23: -0.2266 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.3168 S13: 0.2634 REMARK 3 S21: -0.0053 S22: -0.1049 S23: -0.0044 REMARK 3 S31: -0.2351 S32: 0.0653 S33: 0.1278 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|236 - A|264 } REMARK 3 ORIGIN FOR THE GROUP (A): -71.4918 5.4683 -55.0021 REMARK 3 T TENSOR REMARK 3 T11: 0.2292 T22: 0.5408 REMARK 3 T33: 0.2868 T12: 0.0269 REMARK 3 T13: -0.0276 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.5604 L22: 1.5609 REMARK 3 L33: 0.9635 L12: 0.9279 REMARK 3 L13: 0.1316 L23: -0.5809 REMARK 3 S TENSOR REMARK 3 S11: -0.0610 S12: -0.1581 S13: 0.2272 REMARK 3 S21: 0.0510 S22: -0.0186 S23: 0.0396 REMARK 3 S31: -0.1940 S32: -0.3509 S33: 0.0796 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|265 - A|424 } REMARK 3 ORIGIN FOR THE GROUP (A): -85.2731 5.4588 -58.2168 REMARK 3 T TENSOR REMARK 3 T11: 0.2517 T22: 0.5486 REMARK 3 T33: 0.2179 T12: -0.0224 REMARK 3 T13: 0.0059 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 3.0891 L22: 0.2612 REMARK 3 L33: -0.2533 L12: 0.0530 REMARK 3 L13: -0.2892 L23: -0.2595 REMARK 3 S TENSOR REMARK 3 S11: 0.0835 S12: -0.2242 S13: -0.0881 REMARK 3 S21: 0.0882 S22: -0.0535 S23: 0.0524 REMARK 3 S31: -0.0878 S32: 0.1206 S33: -0.0300 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979292 REMARK 200 MONOCHROMATOR : SI[111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87607 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 79.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.87800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HOLO ENZYME CRYSTALS WERE GROWN IN 0.1 REMARK 280 M BIS-TRIS PH 6.5, 10-15% PEG 3350, 20 MM GLUTAMATE PH 6 (1M REMARK 280 STOCK SOLUTION ADJUSTED TO PH 5) AND 20% (V/V) ETHYLENE GLYCOL. REMARK 280 FOR SOAKING CRYSTALS WERE TRANSFERRED TO A DROP CONTAINING REMARK 280 MOTHER LIQUOR SUPPLEMENTED WITH 2 MM INHIBITOR., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.25400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 THR A 239 REMARK 465 GLU A 240 REMARK 465 GLY A 241 REMARK 465 GLY A 242 REMARK 465 SER A 293 REMARK 465 GLY A 294 REMARK 465 LYS A 295 REMARK 465 ALA A 296 REMARK 465 PRO A 297 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 GLY B 237 REMARK 465 LYS B 238 REMARK 465 THR B 239 REMARK 465 GLU B 240 REMARK 465 GLY B 241 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 GLN A 159 CG CD OE1 NE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 ASP A 290 CG OD1 OD2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 ASN A 292 CG OD1 ND2 REMARK 470 LYS A 415 CG CD CE NZ REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 LYS B 8 CD CE NZ REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 GLU B 155 CG CD OE1 OE2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLN B 159 CG CD OE1 NE2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 470 ARG B 214 CD NE CZ NH1 NH2 REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 LYS B 295 CG CD CE NZ REMARK 470 LYS B 377 CG CD CE NZ REMARK 470 LYS B 415 CG CD CE NZ REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 LYS B 424 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 50.86 34.62 REMARK 500 ASP A 346 1.83 -162.36 REMARK 500 LYS A 416 -14.15 -144.21 REMARK 500 ASP B 21 53.21 35.39 REMARK 500 SER B 83 109.96 -46.69 REMARK 500 LEU B 161 48.79 -103.15 REMARK 500 ASN B 162 -34.92 -138.66 REMARK 500 ASP B 346 6.59 -162.04 REMARK 500 ARG B 407 10.72 -148.49 REMARK 500 LYS B 416 -1.20 -143.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YSA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YSA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HB7 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH Y3U REMARK 900 RELATED ID: 6HB6 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH YSU REMARK 900 RELATED ID: 6HB5 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH YSC DBREF1 6I5Y A 1 424 UNP A0A140NBN7_ECOBD DBREF2 6I5Y A A0A140NBN7 1 424 DBREF1 6I5Y B 1 424 UNP A0A140NBN7_ECOBD DBREF2 6I5Y B A0A140NBN7 1 424 SEQRES 1 A 424 MET ALA SER SER ASN LEU ILE LYS GLN LEU GLN GLU ARG SEQRES 2 A 424 GLY LEU VAL ALA GLN VAL THR ASP GLU GLU ALA LEU ALA SEQRES 3 A 424 GLU ARG LEU ALA GLN GLY PRO ILE ALA LEU TYR CYS GLY SEQRES 4 A 424 PHE ASP PRO THR ALA ASP SER LEU HIS LEU GLY HIS LEU SEQRES 5 A 424 VAL PRO LEU LEU CYS LEU LYS ARG PHE GLN GLN ALA GLY SEQRES 6 A 424 HIS LYS PRO VAL ALA LEU VAL GLY GLY ALA THR GLY LEU SEQRES 7 A 424 ILE GLY ASP PRO SER PHE LYS ALA ALA GLU ARG LYS LEU SEQRES 8 A 424 ASN THR GLU GLU THR VAL GLN GLU TRP VAL ASP LYS ILE SEQRES 9 A 424 ARG LYS GLN VAL ALA PRO PHE LEU ASP PHE ASP CYS GLY SEQRES 10 A 424 GLU ASN SER ALA ILE ALA ALA ASN ASN TYR ASP TRP PHE SEQRES 11 A 424 GLY ASN MET ASN VAL LEU THR PHE LEU ARG ASP ILE GLY SEQRES 12 A 424 LYS HIS PHE SER VAL ASN GLN MET ILE ASN LYS GLU ALA SEQRES 13 A 424 VAL LYS GLN ARG LEU ASN ARG GLU ASP GLN GLY ILE SER SEQRES 14 A 424 PHE THR GLU PHE SER TYR ASN LEU LEU GLN GLY TYR ASP SEQRES 15 A 424 PHE ALA CYS LEU ASN LYS GLN TYR GLY VAL VAL LEU GLN SEQRES 16 A 424 ILE GLY GLY SER ASP GLN TRP GLY ASN ILE THR SER GLY SEQRES 17 A 424 ILE ASP LEU THR ARG ARG LEU HIS GLN ASN GLN VAL PHE SEQRES 18 A 424 GLY LEU THR VAL PRO LEU ILE THR LYS ALA ASP GLY THR SEQRES 19 A 424 LYS PHE GLY LYS THR GLU GLY GLY ALA VAL TRP LEU ASP SEQRES 20 A 424 PRO LYS LYS THR SER PRO TYR LYS PHE TYR GLN PHE TRP SEQRES 21 A 424 ILE ASN THR ALA ASP ALA ASP VAL TYR ARG PHE LEU LYS SEQRES 22 A 424 PHE PHE THR PHE MET SER ILE GLU GLU ILE ASN ALA LEU SEQRES 23 A 424 GLU GLU GLU ASP LYS ASN SER GLY LYS ALA PRO ARG ALA SEQRES 24 A 424 GLN TYR VAL LEU ALA GLU GLN VAL THR ARG LEU VAL HIS SEQRES 25 A 424 GLY GLU GLU GLY LEU GLN ALA ALA LYS ARG ILE THR GLU SEQRES 26 A 424 CYS LEU PHE SER GLY SER LEU SER ALA LEU SER GLU ALA SEQRES 27 A 424 ASP PHE GLU GLN LEU ALA GLN ASP GLY VAL PRO MET VAL SEQRES 28 A 424 GLU MET GLU LYS GLY ALA ASP LEU MET GLN ALA LEU VAL SEQRES 29 A 424 ASP SER GLU LEU GLN PRO SER ARG GLY GLN ALA ARG LYS SEQRES 30 A 424 THR ILE ALA SER ASN ALA ILE THR ILE ASN GLY GLU LYS SEQRES 31 A 424 GLN SER ASP PRO GLU TYR PHE PHE LYS GLU GLU GLU ARG SEQRES 32 A 424 LEU PHE GLY ARG PHE THR LEU LEU ARG ARG GLY LYS LYS SEQRES 33 A 424 ASN TYR CYS LEU ILE CYS TRP LYS SEQRES 1 B 424 MET ALA SER SER ASN LEU ILE LYS GLN LEU GLN GLU ARG SEQRES 2 B 424 GLY LEU VAL ALA GLN VAL THR ASP GLU GLU ALA LEU ALA SEQRES 3 B 424 GLU ARG LEU ALA GLN GLY PRO ILE ALA LEU TYR CYS GLY SEQRES 4 B 424 PHE ASP PRO THR ALA ASP SER LEU HIS LEU GLY HIS LEU SEQRES 5 B 424 VAL PRO LEU LEU CYS LEU LYS ARG PHE GLN GLN ALA GLY SEQRES 6 B 424 HIS LYS PRO VAL ALA LEU VAL GLY GLY ALA THR GLY LEU SEQRES 7 B 424 ILE GLY ASP PRO SER PHE LYS ALA ALA GLU ARG LYS LEU SEQRES 8 B 424 ASN THR GLU GLU THR VAL GLN GLU TRP VAL ASP LYS ILE SEQRES 9 B 424 ARG LYS GLN VAL ALA PRO PHE LEU ASP PHE ASP CYS GLY SEQRES 10 B 424 GLU ASN SER ALA ILE ALA ALA ASN ASN TYR ASP TRP PHE SEQRES 11 B 424 GLY ASN MET ASN VAL LEU THR PHE LEU ARG ASP ILE GLY SEQRES 12 B 424 LYS HIS PHE SER VAL ASN GLN MET ILE ASN LYS GLU ALA SEQRES 13 B 424 VAL LYS GLN ARG LEU ASN ARG GLU ASP GLN GLY ILE SER SEQRES 14 B 424 PHE THR GLU PHE SER TYR ASN LEU LEU GLN GLY TYR ASP SEQRES 15 B 424 PHE ALA CYS LEU ASN LYS GLN TYR GLY VAL VAL LEU GLN SEQRES 16 B 424 ILE GLY GLY SER ASP GLN TRP GLY ASN ILE THR SER GLY SEQRES 17 B 424 ILE ASP LEU THR ARG ARG LEU HIS GLN ASN GLN VAL PHE SEQRES 18 B 424 GLY LEU THR VAL PRO LEU ILE THR LYS ALA ASP GLY THR SEQRES 19 B 424 LYS PHE GLY LYS THR GLU GLY GLY ALA VAL TRP LEU ASP SEQRES 20 B 424 PRO LYS LYS THR SER PRO TYR LYS PHE TYR GLN PHE TRP SEQRES 21 B 424 ILE ASN THR ALA ASP ALA ASP VAL TYR ARG PHE LEU LYS SEQRES 22 B 424 PHE PHE THR PHE MET SER ILE GLU GLU ILE ASN ALA LEU SEQRES 23 B 424 GLU GLU GLU ASP LYS ASN SER GLY LYS ALA PRO ARG ALA SEQRES 24 B 424 GLN TYR VAL LEU ALA GLU GLN VAL THR ARG LEU VAL HIS SEQRES 25 B 424 GLY GLU GLU GLY LEU GLN ALA ALA LYS ARG ILE THR GLU SEQRES 26 B 424 CYS LEU PHE SER GLY SER LEU SER ALA LEU SER GLU ALA SEQRES 27 B 424 ASP PHE GLU GLN LEU ALA GLN ASP GLY VAL PRO MET VAL SEQRES 28 B 424 GLU MET GLU LYS GLY ALA ASP LEU MET GLN ALA LEU VAL SEQRES 29 B 424 ASP SER GLU LEU GLN PRO SER ARG GLY GLN ALA ARG LYS SEQRES 30 B 424 THR ILE ALA SER ASN ALA ILE THR ILE ASN GLY GLU LYS SEQRES 31 B 424 GLN SER ASP PRO GLU TYR PHE PHE LYS GLU GLU GLU ARG SEQRES 32 B 424 LEU PHE GLY ARG PHE THR LEU LEU ARG ARG GLY LYS LYS SEQRES 33 B 424 ASN TYR CYS LEU ILE CYS TRP LYS HET YSA A 501 35 HET EDO A 502 4 HET YSA B 501 35 HET EDO B 502 4 HET EDO B 503 4 HETNAM YSA 5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN YSA TYROSYLADENYLATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 YSA 2(C19 H23 N7 O8 S) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 HOH *733(H2 O) HELIX 1 AA1 ASN A 5 ARG A 13 1 9 HELIX 2 AA2 ASP A 21 GLY A 32 1 12 HELIX 3 AA3 HIS A 48 ALA A 64 1 17 HELIX 4 AA4 ALA A 75 ILE A 79 5 5 HELIX 5 AA5 THR A 93 ALA A 109 1 17 HELIX 6 AA6 PRO A 110 LEU A 112 5 3 HELIX 7 AA7 CYS A 116 SER A 120 5 5 HELIX 8 AA8 ASN A 126 GLY A 131 1 6 HELIX 9 AA9 ASN A 134 ILE A 142 1 9 HELIX 10 AB1 GLY A 143 PHE A 146 5 4 HELIX 11 AB2 SER A 147 ASN A 153 1 7 HELIX 12 AB3 LYS A 154 GLN A 159 1 6 HELIX 13 AB4 ARG A 163 GLY A 167 5 5 HELIX 14 AB5 SER A 169 SER A 174 1 6 HELIX 15 AB6 SER A 174 GLY A 191 1 18 HELIX 16 AB7 GLN A 201 GLN A 217 1 17 HELIX 17 AB8 SER A 252 ASN A 262 1 11 HELIX 18 AB9 ALA A 264 THR A 276 1 13 HELIX 19 AC1 SER A 279 ASN A 292 1 14 HELIX 20 AC2 ALA A 299 GLY A 330 1 32 HELIX 21 AC3 SER A 336 GLY A 347 1 12 HELIX 22 AC4 ASP A 358 SER A 366 1 9 HELIX 23 AC5 SER A 371 SER A 381 1 11 HELIX 24 AC6 LYS A 399 GLY A 406 5 8 HELIX 25 AC7 LEU B 6 ARG B 13 1 8 HELIX 26 AC8 ASP B 21 GLY B 32 1 12 HELIX 27 AC9 HIS B 48 ALA B 64 1 17 HELIX 28 AD1 ALA B 75 ILE B 79 5 5 HELIX 29 AD2 THR B 93 ALA B 109 1 17 HELIX 30 AD3 PRO B 110 LEU B 112 5 3 HELIX 31 AD4 CYS B 116 SER B 120 5 5 HELIX 32 AD5 ASN B 126 GLY B 131 1 6 HELIX 33 AD6 ASN B 134 ILE B 142 1 9 HELIX 34 AD7 GLY B 143 PHE B 146 5 4 HELIX 35 AD8 SER B 147 ASN B 153 1 7 HELIX 36 AD9 LYS B 154 GLN B 159 1 6 HELIX 37 AE1 ARG B 163 GLY B 167 5 5 HELIX 38 AE2 SER B 169 SER B 174 1 6 HELIX 39 AE3 SER B 174 GLY B 191 1 18 HELIX 40 AE4 GLN B 201 GLN B 217 1 17 HELIX 41 AE5 SER B 252 ASN B 262 1 11 HELIX 42 AE6 ALA B 264 THR B 276 1 13 HELIX 43 AE7 SER B 279 SER B 293 1 15 HELIX 44 AE8 ARG B 298 GLY B 330 1 33 HELIX 45 AE9 SER B 336 GLY B 347 1 12 HELIX 46 AF1 ASP B 358 SER B 366 1 9 HELIX 47 AF2 SER B 371 SER B 381 1 11 HELIX 48 AF3 LYS B 399 GLY B 406 5 8 SHEET 1 AA1 5 ILE A 122 ASN A 125 0 SHEET 2 AA1 5 LYS A 67 VAL A 72 1 N VAL A 72 O ALA A 124 SHEET 3 AA1 5 ALA A 35 PHE A 40 1 N LEU A 36 O LYS A 67 SHEET 4 AA1 5 VAL A 192 GLY A 198 1 O VAL A 193 N ALA A 35 SHEET 5 AA1 5 PHE A 221 VAL A 225 1 O PHE A 221 N VAL A 193 SHEET 1 AA2 5 MET A 350 MET A 353 0 SHEET 2 AA2 5 ASN A 417 TRP A 423 1 O LEU A 420 N VAL A 351 SHEET 3 AA2 5 PHE A 408 ARG A 413 -1 N THR A 409 O ILE A 421 SHEET 4 AA2 5 ILE A 384 ILE A 386 -1 N THR A 385 O ARG A 412 SHEET 5 AA2 5 GLU A 389 LYS A 390 -1 O GLU A 389 N ILE A 386 SHEET 1 AA3 5 ILE B 122 ASN B 125 0 SHEET 2 AA3 5 LYS B 67 VAL B 72 1 N VAL B 72 O ALA B 124 SHEET 3 AA3 5 ALA B 35 PHE B 40 1 N LEU B 36 O LYS B 67 SHEET 4 AA3 5 VAL B 192 GLY B 198 1 O ILE B 196 N TYR B 37 SHEET 5 AA3 5 PHE B 221 VAL B 225 1 O PHE B 221 N VAL B 193 SHEET 1 AA4 5 MET B 350 MET B 353 0 SHEET 2 AA4 5 ASN B 417 TRP B 423 1 O CYS B 422 N VAL B 351 SHEET 3 AA4 5 PHE B 408 ARG B 413 -1 N THR B 409 O ILE B 421 SHEET 4 AA4 5 ILE B 384 ILE B 386 -1 N THR B 385 O ARG B 412 SHEET 5 AA4 5 GLU B 389 LYS B 390 -1 O GLU B 389 N ILE B 386 SITE 1 AC1 28 TYR A 37 GLY A 39 ASP A 41 GLY A 50 SITE 2 AC1 28 HIS A 51 VAL A 53 PRO A 54 LEU A 71 SITE 3 AC1 28 THR A 76 ASP A 81 TYR A 175 GLN A 179 SITE 4 AC1 28 ASP A 182 GLN A 195 GLY A 197 GLY A 198 SITE 5 AC1 28 ASP A 200 GLN A 201 PRO A 226 LEU A 227 SITE 6 AC1 28 ILE A 228 HOH A 601 HOH A 630 HOH A 641 SITE 7 AC1 28 HOH A 642 HOH A 651 HOH A 701 HOH A 844 SITE 1 AC2 5 PRO A 110 PHE A 111 LEU A 310 VAL A 311 SITE 2 AC2 5 HOH A 615 SITE 1 AC3 26 TYR B 37 GLY B 39 ASP B 41 GLY B 50 SITE 2 AC3 26 HIS B 51 VAL B 53 PRO B 54 LEU B 71 SITE 3 AC3 26 ASP B 81 TYR B 175 GLN B 179 ASP B 182 SITE 4 AC3 26 GLN B 195 GLY B 197 GLY B 198 ASP B 200 SITE 5 AC3 26 GLN B 201 LEU B 227 ILE B 228 HOH B 602 SITE 6 AC3 26 HOH B 625 HOH B 646 HOH B 648 HOH B 719 SITE 7 AC3 26 HOH B 778 HOH B 819 SITE 1 AC4 2 PRO B 33 GLU B 118 SITE 1 AC5 7 ILE B 386 GLU B 389 LYS B 390 GLN B 391 SITE 2 AC5 7 TYR B 396 GLU B 402 HOH B 693 CRYST1 81.393 66.508 91.710 90.00 101.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012286 0.000000 0.002551 0.00000 SCALE2 0.000000 0.015036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011137 0.00000