HEADER LIGASE 15-NOV-18 6I68 TITLE CO-CRYSTAL STRUCTURE OF HUMAN SPOP MATH DOMAIN (M117V) AND HUMAN BRD3 TITLE 2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECKLE-TYPE POZ PROTEIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: HIB HOMOLOG 1,ROADKILL HOMOLOG 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 3; COMPND 9 CHAIN: B, D, F, H; COMPND 10 SYNONYM: RING3-LIKE PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPOP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BRD3, KIAA0043, RING3L; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LIGASE NUCLEAR CANCER UBIQUITINATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.OSTERTAG,G.M.POPOWICZ,M.SATTLER REVDAT 4 24-JAN-24 6I68 1 REMARK REVDAT 3 15-JAN-20 6I68 1 REMARK REVDAT 2 05-JUN-19 6I68 1 JRNL REVDAT 1 08-MAY-19 6I68 0 JRNL AUTH M.S.OSTERTAG,W.HUTWELKER,O.PLETTENBURG,M.SATTLER, JRNL AUTH 2 G.M.POPOWICZ JRNL TITL STRUCTURAL INSIGHTS INTO BET CLIENT RECOGNITION OF JRNL TITL 2 ENDOMETRIAL AND PROSTATE CANCER-ASSOCIATED SPOP MUTANTS. JRNL REF J.MOL.BIOL. V. 431 2213 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 31026449 JRNL DOI 10.1016/J.JMB.2019.04.017 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 59532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 2795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8695 - 4.9963 0.98 2816 165 0.1792 0.2143 REMARK 3 2 4.9963 - 3.9761 0.98 2846 148 0.1458 0.1770 REMARK 3 3 3.9761 - 3.4766 1.00 2877 117 0.1720 0.2297 REMARK 3 4 3.4766 - 3.1601 1.00 2826 173 0.1846 0.2247 REMARK 3 5 3.1601 - 2.9344 0.99 2866 117 0.2044 0.2369 REMARK 3 6 2.9344 - 2.7618 0.99 2795 158 0.2063 0.2491 REMARK 3 7 2.7618 - 2.6238 0.99 2852 138 0.2153 0.2750 REMARK 3 8 2.6238 - 2.5099 1.00 2836 130 0.2147 0.2773 REMARK 3 9 2.5099 - 2.4134 1.00 2869 130 0.2230 0.2824 REMARK 3 10 2.4134 - 2.3303 1.00 2828 151 0.2230 0.2718 REMARK 3 11 2.3303 - 2.2575 1.00 2817 162 0.2177 0.2532 REMARK 3 12 2.2575 - 2.1931 1.00 2852 137 0.2161 0.2396 REMARK 3 13 2.1931 - 2.1354 1.00 2828 108 0.2194 0.2611 REMARK 3 14 2.1354 - 2.0833 1.00 2936 99 0.2232 0.2936 REMARK 3 15 2.0833 - 2.0360 1.00 2812 140 0.2344 0.3022 REMARK 3 16 2.0360 - 1.9927 0.99 2812 170 0.2334 0.2561 REMARK 3 17 1.9927 - 1.9529 0.99 2782 114 0.2442 0.2695 REMARK 3 18 1.9529 - 1.9161 1.00 2856 158 0.2517 0.2911 REMARK 3 19 1.9161 - 1.8819 0.99 2788 160 0.2785 0.3117 REMARK 3 20 1.8819 - 1.8500 0.99 2843 120 0.3203 0.3803 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4624 REMARK 3 ANGLE : 0.823 6247 REMARK 3 CHIRALITY : 0.053 705 REMARK 3 PLANARITY : 0.004 787 REMARK 3 DIHEDRAL : 7.555 2745 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 23.2426 -13.0866 66.9570 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.1805 REMARK 3 T33: 0.2365 T12: -0.0118 REMARK 3 T13: -0.0029 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 0.1345 L22: 0.4680 REMARK 3 L33: 2.5441 L12: -0.0545 REMARK 3 L13: -0.0095 L23: -0.8990 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.0080 S13: -0.0255 REMARK 3 S21: -0.1035 S22: 0.0066 S23: 0.0482 REMARK 3 S31: 0.3179 S32: -0.0364 S33: -0.0151 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70332 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 90.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.070 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3IVV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM FORMATE, 100 MM BIS TRIS REMARK 280 PROPANE PH 7.5, 20% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.06400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 22 REMARK 465 ALA A 23 REMARK 465 MET A 24 REMARK 465 ALA A 25 REMARK 465 THR B 252 REMARK 465 THR B 253 REMARK 465 GLY C 22 REMARK 465 ALA C 23 REMARK 465 MET C 24 REMARK 465 ALA C 25 REMARK 465 SER C 26 REMARK 465 GLY C 27 REMARK 465 PRO D 251 REMARK 465 THR D 252 REMARK 465 THR D 253 REMARK 465 GLY E 22 REMARK 465 ALA E 23 REMARK 465 MET E 24 REMARK 465 ALA E 25 REMARK 465 SER E 26 REMARK 465 GLY E 27 REMARK 465 GLY G 22 REMARK 465 ALA G 23 REMARK 465 MET G 24 REMARK 465 ALA G 25 REMARK 465 SER G 26 REMARK 465 GLY G 27 REMARK 465 GLN G 165 REMARK 465 ASP G 166 REMARK 465 THR H 252 REMARK 465 THR H 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 31 CE NZ REMARK 470 ARG A 45 NE CZ NH1 NH2 REMARK 470 LYS A 53 NZ REMARK 470 ASN A 62 CG OD1 ND2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 74 NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 LYS A 110 CE NZ REMARK 470 LYS A 115 NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 LYS A 135 NZ REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LYS B 245 NZ REMARK 470 LYS C 28 CG CD CE NZ REMARK 470 LYS C 31 CD CE NZ REMARK 470 ARG C 45 NE CZ NH1 NH2 REMARK 470 GLU C 47 CG CD OE1 OE2 REMARK 470 LYS C 81 CE NZ REMARK 470 LYS C 95 CG CD CE NZ REMARK 470 GLU C 97 CG CD OE1 OE2 REMARK 470 LYS C 110 CD CE NZ REMARK 470 LYS C 115 CG CD CE NZ REMARK 470 LYS C 135 CE NZ REMARK 470 GLN C 165 CG CD OE1 NE2 REMARK 470 LYS D 245 CD CE NZ REMARK 470 LYS E 28 CD CE NZ REMARK 470 LYS E 31 NZ REMARK 470 ARG E 45 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 53 CE NZ REMARK 470 ASN E 62 CG OD1 ND2 REMARK 470 LYS E 64 CG CD CE NZ REMARK 470 LYS E 66 CE NZ REMARK 470 ARG E 70 CZ NH1 NH2 REMARK 470 LYS E 74 CG CD CE NZ REMARK 470 GLU E 79 CD OE1 OE2 REMARK 470 LYS E 81 CG CD CE NZ REMARK 470 LYS E 95 CD CE NZ REMARK 470 GLU E 97 CD OE1 OE2 REMARK 470 LYS E 110 NZ REMARK 470 ARG E 124 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 134 CD CE NZ REMARK 470 ASP E 140 CG OD1 OD2 REMARK 470 GLU E 145 CG CD OE1 OE2 REMARK 470 ASP E 166 CG OD1 OD2 REMARK 470 LYS F 245 CG CD CE NZ REMARK 470 LYS G 28 CG CD CE NZ REMARK 470 ARG G 45 NE CZ NH1 NH2 REMARK 470 GLU G 47 CG CD OE1 OE2 REMARK 470 LYS G 53 CE NZ REMARK 470 LYS G 74 CG CD CE NZ REMARK 470 LEU G 76 CG CD1 CD2 REMARK 470 GLU G 78 CG CD OE1 OE2 REMARK 470 LYS G 81 CD CE NZ REMARK 470 LYS G 95 CG CD CE NZ REMARK 470 LYS G 110 CG CD CE NZ REMARK 470 GLN G 120 CG CD OE1 NE2 REMARK 470 LYS G 135 NZ REMARK 470 GLU G 145 CG CD OE1 OE2 REMARK 470 LYS H 245 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP E 77 O HOH E 201 1.90 REMARK 500 OE2 GLU C 145 O HOH C 201 1.95 REMARK 500 O HOH G 260 O HOH G 273 1.97 REMARK 500 O HOH A 272 O HOH A 278 2.05 REMARK 500 OE1 GLU A 113 O HOH A 201 2.06 REMARK 500 O HOH A 305 O HOH A 306 2.10 REMARK 500 O HOH E 266 O HOH E 273 2.10 REMARK 500 O HOH A 312 O HOH A 324 2.12 REMARK 500 OD1 ASN E 40 O HOH E 202 2.12 REMARK 500 O HOH C 291 O HOH C 315 2.13 REMARK 500 O HOH G 274 O HOH G 286 2.14 REMARK 500 NE2 GLN A 165 O HOH A 202 2.15 REMARK 500 OD1 ASP A 130 O HOH A 203 2.17 REMARK 500 O HOH G 274 O HOH G 277 2.17 REMARK 500 O HOH C 202 O HOH C 305 2.18 REMARK 500 OE1 GLU C 113 O HOH C 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 232 O HOH C 323 2656 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -159.86 -76.28 REMARK 500 ALA A 61 -162.92 -104.23 REMARK 500 GLN A 120 -62.04 70.63 REMARK 500 LYS A 135 62.75 -111.58 REMARK 500 ALA C 61 -144.65 57.29 REMARK 500 GLN C 120 -60.00 67.58 REMARK 500 LYS C 135 59.25 -114.48 REMARK 500 ASP E 77 -155.67 -143.26 REMARK 500 GLN E 120 -53.53 68.07 REMARK 500 LYS E 135 62.86 -118.07 REMARK 500 ALA G 61 -143.76 57.03 REMARK 500 GLN G 120 -24.70 74.00 REMARK 500 LYS G 135 64.14 -113.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 329 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A 330 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH C 323 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH C 324 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH G 291 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH G 292 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH G 293 DISTANCE = 8.03 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6I41 RELATED DB: PDB REMARK 900 PDB 6I41 CONTAINS SPOP WILD-TYPE REMARK 900 RELATED ID: 6I5P RELATED DB: PDB REMARK 900 PDB 6I5P CONTAINS SPOP E47K MUTANT DBREF 6I68 A 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 6I68 B 245 253 UNP Q15059 BRD3_HUMAN 245 253 DBREF 6I68 C 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 6I68 D 245 253 UNP Q15059 BRD3_HUMAN 245 253 DBREF 6I68 E 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 6I68 F 245 253 UNP Q15059 BRD3_HUMAN 245 253 DBREF 6I68 G 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 6I68 H 245 253 UNP Q15059 BRD3_HUMAN 245 253 SEQADV 6I68 GLY A 22 UNP O43791 EXPRESSION TAG SEQADV 6I68 ALA A 23 UNP O43791 EXPRESSION TAG SEQADV 6I68 MET A 24 UNP O43791 EXPRESSION TAG SEQADV 6I68 ALA A 25 UNP O43791 EXPRESSION TAG SEQADV 6I68 SER A 26 UNP O43791 EXPRESSION TAG SEQADV 6I68 GLY A 27 UNP O43791 EXPRESSION TAG SEQADV 6I68 VAL A 117 UNP O43791 MET 117 ENGINEERED MUTATION SEQADV 6I68 GLY C 22 UNP O43791 EXPRESSION TAG SEQADV 6I68 ALA C 23 UNP O43791 EXPRESSION TAG SEQADV 6I68 MET C 24 UNP O43791 EXPRESSION TAG SEQADV 6I68 ALA C 25 UNP O43791 EXPRESSION TAG SEQADV 6I68 SER C 26 UNP O43791 EXPRESSION TAG SEQADV 6I68 GLY C 27 UNP O43791 EXPRESSION TAG SEQADV 6I68 VAL C 117 UNP O43791 MET 117 ENGINEERED MUTATION SEQADV 6I68 GLY E 22 UNP O43791 EXPRESSION TAG SEQADV 6I68 ALA E 23 UNP O43791 EXPRESSION TAG SEQADV 6I68 MET E 24 UNP O43791 EXPRESSION TAG SEQADV 6I68 ALA E 25 UNP O43791 EXPRESSION TAG SEQADV 6I68 SER E 26 UNP O43791 EXPRESSION TAG SEQADV 6I68 GLY E 27 UNP O43791 EXPRESSION TAG SEQADV 6I68 VAL E 117 UNP O43791 MET 117 ENGINEERED MUTATION SEQADV 6I68 GLY G 22 UNP O43791 EXPRESSION TAG SEQADV 6I68 ALA G 23 UNP O43791 EXPRESSION TAG SEQADV 6I68 MET G 24 UNP O43791 EXPRESSION TAG SEQADV 6I68 ALA G 25 UNP O43791 EXPRESSION TAG SEQADV 6I68 SER G 26 UNP O43791 EXPRESSION TAG SEQADV 6I68 GLY G 27 UNP O43791 EXPRESSION TAG SEQADV 6I68 VAL G 117 UNP O43791 MET 117 ENGINEERED MUTATION SEQRES 1 A 145 GLY ALA MET ALA SER GLY LYS VAL VAL LYS PHE SER TYR SEQRES 2 A 145 MET TRP THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU SEQRES 3 A 145 MET GLY GLU VAL ILE LYS SER SER THR PHE SER SER GLY SEQRES 4 A 145 ALA ASN ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO SEQRES 5 A 145 LYS GLY LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU SEQRES 6 A 145 TYR LEU LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG SEQRES 7 A 145 ALA LYS PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU SEQRES 8 A 145 GLU THR LYS ALA VAL GLU SER GLN ARG ALA TYR ARG PHE SEQRES 9 A 145 VAL GLN GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG SEQRES 10 A 145 ARG ASP PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO SEQRES 11 A 145 ASP ASP LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL SEQRES 12 A 145 GLN ASP SEQRES 1 B 9 LYS ALA ASP THR THR THR PRO THR THR SEQRES 1 C 145 GLY ALA MET ALA SER GLY LYS VAL VAL LYS PHE SER TYR SEQRES 2 C 145 MET TRP THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU SEQRES 3 C 145 MET GLY GLU VAL ILE LYS SER SER THR PHE SER SER GLY SEQRES 4 C 145 ALA ASN ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO SEQRES 5 C 145 LYS GLY LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU SEQRES 6 C 145 TYR LEU LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG SEQRES 7 C 145 ALA LYS PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU SEQRES 8 C 145 GLU THR LYS ALA VAL GLU SER GLN ARG ALA TYR ARG PHE SEQRES 9 C 145 VAL GLN GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG SEQRES 10 C 145 ARG ASP PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO SEQRES 11 C 145 ASP ASP LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL SEQRES 12 C 145 GLN ASP SEQRES 1 D 9 LYS ALA ASP THR THR THR PRO THR THR SEQRES 1 E 145 GLY ALA MET ALA SER GLY LYS VAL VAL LYS PHE SER TYR SEQRES 2 E 145 MET TRP THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU SEQRES 3 E 145 MET GLY GLU VAL ILE LYS SER SER THR PHE SER SER GLY SEQRES 4 E 145 ALA ASN ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO SEQRES 5 E 145 LYS GLY LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU SEQRES 6 E 145 TYR LEU LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG SEQRES 7 E 145 ALA LYS PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU SEQRES 8 E 145 GLU THR LYS ALA VAL GLU SER GLN ARG ALA TYR ARG PHE SEQRES 9 E 145 VAL GLN GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG SEQRES 10 E 145 ARG ASP PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO SEQRES 11 E 145 ASP ASP LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL SEQRES 12 E 145 GLN ASP SEQRES 1 F 9 LYS ALA ASP THR THR THR PRO THR THR SEQRES 1 G 145 GLY ALA MET ALA SER GLY LYS VAL VAL LYS PHE SER TYR SEQRES 2 G 145 MET TRP THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU SEQRES 3 G 145 MET GLY GLU VAL ILE LYS SER SER THR PHE SER SER GLY SEQRES 4 G 145 ALA ASN ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO SEQRES 5 G 145 LYS GLY LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU SEQRES 6 G 145 TYR LEU LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG SEQRES 7 G 145 ALA LYS PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU SEQRES 8 G 145 GLU THR LYS ALA VAL GLU SER GLN ARG ALA TYR ARG PHE SEQRES 9 G 145 VAL GLN GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG SEQRES 10 G 145 ARG ASP PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO SEQRES 11 G 145 ASP ASP LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL SEQRES 12 G 145 GLN ASP SEQRES 1 H 9 LYS ALA ASP THR THR THR PRO THR THR FORMUL 9 HOH *472(H2 O) HELIX 1 AA1 ASN A 40 CYS A 44 5 5 HELIX 2 AA2 ASP A 77 LYS A 81 5 5 HELIX 3 AA3 ARG A 139 ASP A 144 1 6 HELIX 4 AA4 GLU A 145 GLY A 148 5 4 HELIX 5 AA5 LEU A 150 LYS A 154 5 5 HELIX 6 AA6 ASN C 40 CYS C 44 5 5 HELIX 7 AA7 ASP C 77 LYS C 81 5 5 HELIX 8 AA8 ARG C 139 ASP C 144 1 6 HELIX 9 AA9 GLU C 145 GLY C 148 5 4 HELIX 10 AB1 LEU C 150 LYS C 154 5 5 HELIX 11 AB2 ASN E 40 CYS E 44 5 5 HELIX 12 AB3 ASP E 77 LYS E 81 5 5 HELIX 13 AB4 ARG E 139 LEU E 143 1 5 HELIX 14 AB5 LEU E 150 LYS E 154 5 5 HELIX 15 AB6 ASN G 40 CYS G 44 5 5 HELIX 16 AB7 ASP G 77 LYS G 81 5 5 HELIX 17 AB8 ARG G 139 ASP G 144 1 6 HELIX 18 AB9 GLU G 145 GLY G 148 5 4 HELIX 19 AC1 LEU G 150 LYS G 154 5 5 SHEET 1 AA1 8 GLU A 113 GLU A 118 0 SHEET 2 AA1 8 VAL A 98 LEU A 107 -1 N ILE A 106 O THR A 114 SHEET 3 AA1 8 LEU A 155 GLN A 165 -1 O PHE A 158 N SER A 105 SHEET 4 AA1 8 VAL A 30 ILE A 38 -1 N ILE A 38 O LEU A 155 SHEET 5 AA1 8 VAL C 30 ILE C 38 1 O MET C 35 N MET A 35 SHEET 6 AA1 8 LEU C 155 ASP C 166 -1 O LEU C 155 N ILE C 38 SHEET 7 AA1 8 GLU C 97 LEU C 107 -1 N LYS C 103 O GLU C 160 SHEET 8 AA1 8 GLU C 113 GLU C 118 -1 O VAL C 117 N PHE C 104 SHEET 1 AA2 8 TYR A 123 PHE A 125 0 SHEET 2 AA2 8 VAL A 98 LEU A 107 -1 N ALA A 100 O TYR A 123 SHEET 3 AA2 8 LEU A 155 GLN A 165 -1 O PHE A 158 N SER A 105 SHEET 4 AA2 8 VAL A 30 ILE A 38 -1 N ILE A 38 O LEU A 155 SHEET 5 AA2 8 VAL C 30 ILE C 38 1 O MET C 35 N MET A 35 SHEET 6 AA2 8 LEU C 155 ASP C 166 -1 O LEU C 155 N ILE C 38 SHEET 7 AA2 8 GLU C 97 LEU C 107 -1 N LYS C 103 O GLU C 160 SHEET 8 AA2 8 TYR C 123 PHE C 125 -1 O PHE C 125 N VAL C 98 SHEET 1 AA3 4 ILE A 52 LYS A 53 0 SHEET 2 AA3 4 TRP A 67 ASN A 72 -1 O VAL A 71 N ILE A 52 SHEET 3 AA3 4 TYR A 83 LEU A 90 -1 O SER A 85 N ASN A 72 SHEET 4 AA3 4 ASP A 130 ARG A 138 -1 O ILE A 137 N LEU A 84 SHEET 1 AA4 3 ILE C 52 LYS C 53 0 SHEET 2 AA4 3 LYS C 66 ASN C 72 -1 O VAL C 71 N ILE C 52 SHEET 3 AA4 3 PHE C 57 SER C 58 -1 N PHE C 57 O TRP C 67 SHEET 1 AA5 4 ILE C 52 LYS C 53 0 SHEET 2 AA5 4 LYS C 66 ASN C 72 -1 O VAL C 71 N ILE C 52 SHEET 3 AA5 4 TYR C 83 LEU C 90 -1 O LEU C 89 N CYS C 68 SHEET 4 AA5 4 ASP C 130 ARG C 138 -1 O TRP C 131 N LEU C 88 SHEET 1 AA6 8 GLU E 113 GLU E 118 0 SHEET 2 AA6 8 VAL E 98 LEU E 107 -1 N ILE E 106 O THR E 114 SHEET 3 AA6 8 LEU E 155 GLN E 165 -1 O VAL E 164 N ARG E 99 SHEET 4 AA6 8 VAL E 30 ILE E 38 -1 N ILE E 38 O LEU E 155 SHEET 5 AA6 8 VAL G 30 ILE G 38 1 O SER G 33 N MET E 35 SHEET 6 AA6 8 LEU G 155 VAL G 163 -1 O LEU G 157 N TRP G 36 SHEET 7 AA6 8 VAL G 98 LEU G 107 -1 N SER G 105 O PHE G 158 SHEET 8 AA6 8 GLU G 113 GLU G 118 -1 O VAL G 117 N PHE G 104 SHEET 1 AA7 8 TYR E 123 PHE E 125 0 SHEET 2 AA7 8 VAL E 98 LEU E 107 -1 N VAL E 98 O PHE E 125 SHEET 3 AA7 8 LEU E 155 GLN E 165 -1 O VAL E 164 N ARG E 99 SHEET 4 AA7 8 VAL E 30 ILE E 38 -1 N ILE E 38 O LEU E 155 SHEET 5 AA7 8 VAL G 30 ILE G 38 1 O SER G 33 N MET E 35 SHEET 6 AA7 8 LEU G 155 VAL G 163 -1 O LEU G 157 N TRP G 36 SHEET 7 AA7 8 VAL G 98 LEU G 107 -1 N SER G 105 O PHE G 158 SHEET 8 AA7 8 TYR G 123 PHE G 125 -1 O PHE G 125 N VAL G 98 SHEET 1 AA8 4 ILE E 52 LYS E 53 0 SHEET 2 AA8 4 TRP E 67 ASN E 72 -1 O VAL E 71 N ILE E 52 SHEET 3 AA8 4 TYR E 83 LEU E 90 -1 O LEU E 89 N CYS E 68 SHEET 4 AA8 4 ASP E 130 ARG E 138 -1 O TRP E 131 N LEU E 88 SHEET 1 AA9 3 ILE G 52 LYS G 53 0 SHEET 2 AA9 3 LYS G 66 ASN G 72 -1 O VAL G 71 N ILE G 52 SHEET 3 AA9 3 PHE G 57 SER G 58 -1 N PHE G 57 O TRP G 67 SHEET 1 AB1 4 ILE G 52 LYS G 53 0 SHEET 2 AB1 4 LYS G 66 ASN G 72 -1 O VAL G 71 N ILE G 52 SHEET 3 AB1 4 TYR G 83 LEU G 90 -1 O LEU G 89 N CYS G 68 SHEET 4 AB1 4 ASP G 130 ARG G 138 -1 O ILE G 137 N LEU G 84 SSBOND 1 CYS A 93 CYS C 93 1555 1455 2.03 SSBOND 2 CYS E 93 CYS G 93 1555 1455 2.01 CRYST1 44.775 90.128 88.563 90.00 91.17 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022334 0.000000 0.000456 0.00000 SCALE2 0.000000 0.011095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011294 0.00000