HEADER GENE REGULATION 21-NOV-18 6I8Y TITLE CRYSTAL STRUCTURE OF SPINDLIN1 IN COMPLEX WITH THE METHYLTRANSFERASE TITLE 2 INHIBITOR A366 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPINDLIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OVARIAN CANCER-RELATED PROTEIN,SPINDLIN1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPIN1, OCR, SPIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EPIGENETICS, TUDOR DOMAIN, METHYL-LYSINE, METHYL-ARGININE, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR V.SRIKANNATHASAN,C.JOHANSSON,C.GILEADI,L.SHRESTHA,F.J.SORRELL, AUTHOR 2 T.KROJER,N.A.BURGESS-BROWN,F.VON DELFT,C.H.ARROWSMITH,C.BOUNTRA, AUTHOR 3 A.EDWARDS,U.C.T.OPPERMANN REVDAT 3 24-JAN-24 6I8Y 1 LINK REVDAT 2 15-JAN-20 6I8Y 1 JRNL REVDAT 1 26-DEC-18 6I8Y 0 JRNL AUTH V.FAGAN,C.JOHANSSON,C.GILEADI,O.MONTEIRO,J.E.DUNFORD, JRNL AUTH 2 R.NIBHANI,M.PHILPOTT,J.MALZAHN,G.WELLS,R.FARAM,A.P.CRIBBS, JRNL AUTH 3 N.HALIDI,F.LI,I.CHAU,H.GRESCHIK,S.VELUPILLAI, JRNL AUTH 4 A.ALLALI-HASSANI,J.BENNETT,T.CHRISTOTT,C.GIROUD,A.M.LEWIS, JRNL AUTH 5 K.V.M.HUBER,N.ATHANASOU,C.BOUNTRA,M.JUNG,R.SCHULE,M.VEDADI, JRNL AUTH 6 C.ARROWSMITH,Y.XIONG,J.JIN,O.FEDOROV,G.FARNIE,P.E.BRENNAN, JRNL AUTH 7 U.OPPERMANN JRNL TITL A CHEMICAL PROBE FOR TUDOR DOMAIN PROTEIN SPINDLIN1 TO JRNL TITL 2 INVESTIGATE CHROMATIN FUNCTION. JRNL REF J.MED.CHEM. V. 62 9008 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31550156 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00562 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 82.2648 - 3.9083 1.00 2804 159 0.1951 0.2171 REMARK 3 2 3.9083 - 3.1021 1.00 2653 147 0.1715 0.1895 REMARK 3 3 3.1021 - 2.7099 1.00 2630 152 0.1769 0.1780 REMARK 3 4 2.7099 - 2.4621 1.00 2618 143 0.1770 0.2006 REMARK 3 5 2.4621 - 2.2857 1.00 2604 134 0.1801 0.1967 REMARK 3 6 2.2857 - 2.1509 1.00 2588 136 0.1768 0.1740 REMARK 3 7 2.1509 - 2.0432 1.00 2570 145 0.1751 0.1792 REMARK 3 8 2.0432 - 1.9542 1.00 2594 133 0.1798 0.2176 REMARK 3 9 1.9542 - 1.8790 1.00 2544 165 0.1872 0.2085 REMARK 3 10 1.8790 - 1.8141 1.00 2561 135 0.1988 0.2247 REMARK 3 11 1.8141 - 1.7574 1.00 2601 105 0.1988 0.1834 REMARK 3 12 1.7574 - 1.7072 1.00 2564 131 0.2084 0.2263 REMARK 3 13 1.7072 - 1.6622 1.00 2571 126 0.2195 0.2467 REMARK 3 14 1.6622 - 1.6217 1.00 2556 141 0.2420 0.2629 REMARK 3 15 1.6217 - 1.5848 1.00 2565 129 0.2639 0.2819 REMARK 3 16 1.5848 - 1.5511 1.00 2544 116 0.2964 0.3120 REMARK 3 17 1.5511 - 1.5200 1.00 2560 138 0.3348 0.3420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1658 REMARK 3 ANGLE : 1.391 2247 REMARK 3 CHIRALITY : 0.077 232 REMARK 3 PLANARITY : 0.009 275 REMARK 3 DIHEDRAL : 17.939 968 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0584 2.8490 1.7932 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1365 REMARK 3 T33: 0.2537 T12: 0.0078 REMARK 3 T13: 0.0049 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 3.1094 L22: 7.3096 REMARK 3 L33: 4.1438 L12: -1.4126 REMARK 3 L13: -0.5904 L23: 2.3058 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.1412 S13: 0.3871 REMARK 3 S21: 0.0179 S22: -0.2325 S23: 0.5504 REMARK 3 S31: -0.5181 S32: -0.1693 S33: 0.0036 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7639 -5.2806 2.7499 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.0672 REMARK 3 T33: 0.1381 T12: -0.0396 REMARK 3 T13: 0.0050 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 5.2702 L22: 0.5794 REMARK 3 L33: 2.4460 L12: -1.0466 REMARK 3 L13: -1.8849 L23: 0.1789 REMARK 3 S TENSOR REMARK 3 S11: -0.1256 S12: 0.0024 S13: -0.1297 REMARK 3 S21: 0.1111 S22: -0.0017 S23: 0.0153 REMARK 3 S31: 0.1788 S32: -0.0661 S33: 0.0714 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4418 -4.6633 -7.0724 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1406 REMARK 3 T33: 0.1413 T12: -0.0222 REMARK 3 T13: 0.0194 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 2.1568 L22: 0.9726 REMARK 3 L33: 3.3160 L12: 0.4998 REMARK 3 L13: 1.6823 L23: 0.7319 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: 0.1039 S13: 0.0762 REMARK 3 S21: -0.1615 S22: 0.0503 S23: 0.0211 REMARK 3 S31: -0.0810 S32: -0.0777 S33: -0.0608 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2757 -7.1675 -12.8261 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.2057 REMARK 3 T33: 0.1786 T12: -0.0593 REMARK 3 T13: -0.0040 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.9181 L22: 1.8152 REMARK 3 L33: 5.0624 L12: 0.3740 REMARK 3 L13: -0.9337 L23: -0.7820 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: 0.1341 S13: 0.0988 REMARK 3 S21: -0.1134 S22: 0.0118 S23: 0.0903 REMARK 3 S31: -0.0828 S32: -0.2750 S33: 0.0117 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7338 -16.1636 3.1282 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.2040 REMARK 3 T33: 0.1675 T12: -0.1051 REMARK 3 T13: -0.0050 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.4464 L22: 0.9676 REMARK 3 L33: 1.6236 L12: 1.2012 REMARK 3 L13: -1.2320 L23: -0.6853 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0263 S13: -0.2166 REMARK 3 S21: 0.0428 S22: -0.0311 S23: 0.0218 REMARK 3 S31: 0.2867 S32: -0.2978 S33: 0.0205 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200013017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46462 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 82.145 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : 0.79100 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4H75 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH=6.5,0.2M CACL2, 45% REMARK 280 MPD, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.81500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.08500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.72250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.08500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.90750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.08500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.08500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.72250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.08500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.08500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 10.90750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.81500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 48 REMARK 465 PRO A 49 REMARK 465 ARG A 50 REMARK 465 THR A 120 REMARK 465 SER A 121 REMARK 465 ARG A 122 REMARK 465 ILE A 123 REMARK 465 SER A 124 REMARK 465 ASP A 125 REMARK 465 ALA A 126 REMARK 465 HIS A 127 REMARK 465 ASP A 195 REMARK 465 SER A 196 REMARK 465 ASN A 197 REMARK 465 ASP A 198 REMARK 465 SER A 199 REMARK 465 PRO A 200 REMARK 465 PRO A 201 REMARK 465 ALA A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 465 GLU A 205 REMARK 465 PRO A 206 REMARK 465 GLY A 207 REMARK 465 GLU A 208 REMARK 465 VAL A 209 REMARK 465 VAL A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 223 REMARK 465 ASP A 224 REMARK 465 GLY A 225 REMARK 465 SER A 226 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 54 CG1 CG2 REMARK 470 GLU A 106 OE1 OE2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 LYS A 148 CD CE NZ REMARK 470 ASN A 163 CG OD1 ND2 REMARK 470 ARG A 191 NE CZ NH1 NH2 REMARK 470 LYS A 222 CD CE NZ REMARK 470 GLU A 237 CD OE1 OE2 REMARK 470 LYS A 239 CD NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 83 85.40 -153.26 REMARK 500 ASP A 173 82.82 -161.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 138 OE1 REMARK 620 2 GLU A 138 OE2 51.2 REMARK 620 3 GLN A 217 OE1 66.8 19.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2OD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2OD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 DBREF 6I8Y A 49 262 UNP Q9Y657 SPIN1_HUMAN 49 262 SEQADV 6I8Y MET A 48 UNP Q9Y657 INITIATING METHIONINE SEQADV 6I8Y ALA A 263 UNP Q9Y657 EXPRESSION TAG SEQADV 6I8Y GLU A 264 UNP Q9Y657 EXPRESSION TAG SEQADV 6I8Y ASN A 265 UNP Q9Y657 EXPRESSION TAG SEQADV 6I8Y LEU A 266 UNP Q9Y657 EXPRESSION TAG SEQADV 6I8Y TYR A 267 UNP Q9Y657 EXPRESSION TAG SEQADV 6I8Y PHE A 268 UNP Q9Y657 EXPRESSION TAG SEQADV 6I8Y GLN A 269 UNP Q9Y657 EXPRESSION TAG SEQRES 1 A 222 MET PRO ARG ARG ASN ILE VAL GLY CYS ARG ILE GLN HIS SEQRES 2 A 222 GLY TRP LYS GLU GLY ASN GLY PRO VAL THR GLN TRP LYS SEQRES 3 A 222 GLY THR VAL LEU ASP GLN VAL PRO VAL ASN PRO SER LEU SEQRES 4 A 222 TYR LEU ILE LYS TYR ASP GLY PHE ASP CYS VAL TYR GLY SEQRES 5 A 222 LEU GLU LEU ASN LYS ASP GLU ARG VAL SER ALA LEU GLU SEQRES 6 A 222 VAL LEU PRO ASP ARG VAL ALA THR SER ARG ILE SER ASP SEQRES 7 A 222 ALA HIS LEU ALA ASP THR MET ILE GLY LYS ALA VAL GLU SEQRES 8 A 222 HIS MET PHE GLU THR GLU ASP GLY SER LYS ASP GLU TRP SEQRES 9 A 222 ARG GLY MET VAL LEU ALA ARG ALA PRO VAL MET ASN THR SEQRES 10 A 222 TRP PHE TYR ILE THR TYR GLU LYS ASP PRO VAL LEU TYR SEQRES 11 A 222 MET TYR GLN LEU LEU ASP ASP TYR LYS GLU GLY ASP LEU SEQRES 12 A 222 ARG ILE MET PRO ASP SER ASN ASP SER PRO PRO ALA GLU SEQRES 13 A 222 ARG GLU PRO GLY GLU VAL VAL ASP SER LEU VAL GLY LYS SEQRES 14 A 222 GLN VAL GLU TYR ALA LYS GLU ASP GLY SER LYS ARG THR SEQRES 15 A 222 GLY MET VAL ILE HIS GLN VAL GLU ALA LYS PRO SER VAL SEQRES 16 A 222 TYR PHE ILE LYS PHE ASP ASP ASP PHE HIS ILE TYR VAL SEQRES 17 A 222 TYR ASP LEU VAL LYS THR SER ALA GLU ASN LEU TYR PHE SEQRES 18 A 222 GLN HET 2OD A 301 24 HET 2OD A 302 24 HET EDO A 303 10 HET EDO A 304 10 HET DMS A 305 10 HET MPD A 306 22 HET GOL A 307 14 HET NA A 308 1 HETNAM 2OD 5'-METHOXY-6'-[3-(PYRROLIDIN-1-YL) HETNAM 2 2OD PROPOXY]SPIRO[CYCLOBUTANE-1,3'-INDOL]-2'-AMINE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 2OD 2(C19 H27 N3 O2) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 DMS C2 H6 O S FORMUL 7 MPD C6 H14 O2 FORMUL 8 GOL C3 H8 O3 FORMUL 9 NA NA 1+ FORMUL 10 HOH *107(H2 O) HELIX 1 AA1 ALA A 129 ILE A 133 5 5 HELIX 2 AA2 GLN A 180 GLU A 187 1 8 HELIX 3 AA3 LYS A 260 GLU A 264 5 5 SHEET 1 AA1 5 TYR A 98 GLU A 101 0 SHEET 2 AA1 5 ASN A 83 TYR A 91 -1 N ILE A 89 O TYR A 98 SHEET 3 AA1 5 THR A 70 VAL A 80 -1 N LEU A 77 O LEU A 88 SHEET 4 AA1 5 ARG A 57 TRP A 62 -1 N ILE A 58 O GLY A 74 SHEET 5 AA1 5 VAL A 108 VAL A 113 -1 O GLU A 112 N GLN A 59 SHEET 1 AA2 5 ASP A 173 TYR A 179 0 SHEET 2 AA2 5 PHE A 166 TYR A 170 -1 N ILE A 168 O TYR A 177 SHEET 3 AA2 5 LYS A 148 ARG A 158 -1 N ALA A 157 O TYR A 167 SHEET 4 AA2 5 ALA A 136 GLU A 142 -1 N HIS A 139 O TRP A 151 SHEET 5 AA2 5 LEU A 190 ILE A 192 -1 O ARG A 191 N GLU A 138 SHEET 1 AA3 5 TYR A 254 ASP A 257 0 SHEET 2 AA3 5 VAL A 242 PHE A 247 -1 N ILE A 245 O TYR A 254 SHEET 3 AA3 5 ARG A 228 GLN A 235 -1 N MET A 231 O LYS A 246 SHEET 4 AA3 5 GLN A 217 TYR A 220 -1 N TYR A 220 O ARG A 228 SHEET 5 AA3 5 TYR A 267 GLN A 269 -1 O TYR A 267 N GLU A 219 LINK OE1 GLU A 138 NA NA A 308 1555 1554 2.62 LINK OE2 GLU A 138 NA NA A 308 1555 1554 2.41 LINK OE1AGLN A 217 NA NA A 308 1555 1555 2.25 SITE 1 AC1 10 ASP A 95 VAL A 118 HIS A 139 PHE A 141 SITE 2 AC1 10 TRP A 151 TYR A 170 TYR A 177 TYR A 179 SITE 3 AC1 10 ASP A 184 HOH A 456 SITE 1 AC2 9 ARG A 51 ASN A 52 TRP A 62 TRP A 72 SITE 2 AC2 9 TYR A 91 PHE A 94 TYR A 98 ASP A 116 SITE 3 AC2 9 EDO A 303 SITE 1 AC3 5 ARG A 51 TYR A 98 HIS A 252 2OD A 302 SITE 2 AC3 5 HOH A 459 SITE 1 AC4 3 PRO A 81 LYS A 186 GLY A 188 SITE 1 AC5 4 ILE A 53 PRO A 68 TYR A 87 HOH A 429 SITE 1 AC6 2 THR A 169 HOH A 407 SITE 1 AC7 3 GLU A 138 GLN A 217 GLN A 269 CRYST1 116.170 116.170 43.630 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008608 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022920 0.00000