HEADER MEMBRANE PROTEIN 22-NOV-18 6I96 TITLE STRUCTURE OF THE FERRIOXAMINE B TRANSPORTER FOXA FROM PSEUDOMONAS TITLE 2 AERUGINOSA IN COMPLEX WITH FERRIOXAMINE B COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRIC HYDROXAMATE UPTAKE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FERRICHROME-IRON RECEPTOR,FERRIOXAMINE RECEPTOR FOXA,TONB- COMPND 5 DEPENDENT SIDEROPHORE RECEPTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: FHUA, FHUA_5, C0044_18480, CAZ10_13360, CCBH4851_00003, SOURCE 5 DZ940_30305, EGY23_22030, PAERUG_E15_LONDON_28_01_14_03466; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OUTER MEMBRANE IRON, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.JOSTS,H.TIDOW REVDAT 3 13-NOV-24 6I96 1 HETSYN REVDAT 2 29-JUL-20 6I96 1 COMPND REMARK HETNAM SITE REVDAT 1 28-AUG-19 6I96 0 JRNL AUTH I.JOSTS,K.VEITH,H.TIDOW JRNL TITL TERNARY STRUCTURE OF THE OUTER MEMBRANE TRANSPORTER FOXA JRNL TITL 2 WITH RESOLVED SIGNALLING DOMAIN PROVIDES INSIGHTS INTO JRNL TITL 3 TONB-MEDIATED SIDEROPHORE UPTAKE. JRNL REF ELIFE V. 8 2019 JRNL REFN ESSN 2050-084X JRNL PMID 31385808 JRNL DOI 10.7554/ELIFE.48528 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 75099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3949 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5174 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.4090 REMARK 3 BIN FREE R VALUE SET COUNT : 278 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 363 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : -4.10000 REMARK 3 B12 (A**2) : 0.63000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.256 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5803 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5179 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7833 ; 3.183 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12091 ; 1.352 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 676 ; 7.314 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;38.134 ;24.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 858 ;15.186 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;23.166 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 851 ; 0.197 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6259 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1188 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 820 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2670 33.4176 18.1903 REMARK 3 T TENSOR REMARK 3 T11: 0.0418 T22: 0.1306 REMARK 3 T33: 0.0397 T12: -0.0240 REMARK 3 T13: 0.0101 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.9106 L22: 0.3533 REMARK 3 L33: 1.0833 L12: -0.0083 REMARK 3 L13: -0.5246 L23: 0.0427 REMARK 3 S TENSOR REMARK 3 S11: -0.0674 S12: 0.0237 S13: -0.1395 REMARK 3 S21: -0.0495 S22: -0.0743 S23: 0.0729 REMARK 3 S31: 0.1588 S32: -0.0211 S33: 0.1417 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6I96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79352 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 82.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 17.00 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 1.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1M HEPES PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.40800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.20400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.20400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 118.40800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 145 CE1 PHE A 145 CZ 0.136 REMARK 500 THR A 333 N THR A 333 CA 0.156 REMARK 500 GLU A 341 CD GLU A 341 OE1 0.071 REMARK 500 ASP A 421 CA ASP A 421 CB 0.134 REMARK 500 ASP A 421 CB ASP A 421 CG -0.184 REMARK 500 SER A 435 CB SER A 435 OG -0.081 REMARK 500 ARG A 498 CZ ARG A 498 NH2 0.090 REMARK 500 SER A 524 CB SER A 524 OG -0.100 REMARK 500 ARG A 671 CZ ARG A 671 NH1 0.102 REMARK 500 THR A 748 CB THR A 748 CG2 -0.229 REMARK 500 TRP A 749 CE3 TRP A 749 CZ3 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 199 CG - SD - CE ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG A 200 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 222 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 226 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 292 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 MET A 301 CG - SD - CE ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 319 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 327 CB - CG - CD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 THR A 333 C - N - CA ANGL. DEV. = -21.2 DEGREES REMARK 500 ASP A 352 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 393 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 410 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 410 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 419 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 419 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ASP A 421 CB - CG - OD1 ANGL. DEV. = -24.4 DEGREES REMARK 500 ASP A 421 CB - CG - OD2 ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG A 427 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 463 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 463 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 497 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 504 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 504 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 528 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 671 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 685 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 GLU A 747 OE1 - CD - OE2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 751 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 757 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 793 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 810 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 810 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 145 83.26 102.32 REMARK 500 LEU A 151 -142.28 53.04 REMARK 500 LYS A 167 15.19 57.89 REMARK 500 MET A 240 9.57 84.04 REMARK 500 SER A 266 27.96 -144.18 REMARK 500 THR A 333 -142.79 -117.87 REMARK 500 SER A 354 -159.21 -151.99 REMARK 500 HIS A 374 57.64 -147.07 REMARK 500 THR A 382 -54.23 -125.08 REMARK 500 ASP A 549 -127.92 59.25 REMARK 500 ASN A 639 49.24 -108.38 REMARK 500 SER A 666 52.70 -100.80 REMARK 500 ASP A 685 15.18 53.82 REMARK 500 LYS A 809 -171.98 -66.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 144 PHE A 145 149.64 REMARK 500 GLY A 637 SER A 638 -147.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 145 -10.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BNG A 902 REMARK 610 BNG A 910 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 927 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 263 O REMARK 620 2 GLU A 628 OE1 151.5 REMARK 620 3 GLU A 628 OE2 109.4 43.4 REMARK 620 N 1 2 DBREF1 6I96 A 144 820 UNP A0A0C7CQY7_PSEAI DBREF2 6I96 A A0A0C7CQY7 144 820 SEQRES 1 A 677 VAL PHE ALA LEU GLY ASN ASN LEU GLY SER THR ASP GLY SEQRES 2 A 677 TYR LEU ALA THR HIS SER GLN ILE ALA THR LYS THR SER SEQRES 3 A 677 LYS PRO LEU LEU GLU THR SER GLN THR VAL SER VAL ILE SEQRES 4 A 677 THR ARG GLU GLN ILE ASP ASP THR ALA SER LYS THR VAL SEQRES 5 A 677 GLN GLN ALA MET ARG TYR THR PRO GLY ILE PHE THR GLY SEQRES 6 A 677 GLN VAL GLY ALA SER ASN ARG TYR ASP TYR VAL VAL MET SEQRES 7 A 677 ARG GLY PHE ALA ASP ASN SER VAL ASP ASN ILE TYR LEU SEQRES 8 A 677 ASP GLY LEU LYS ALA MET GLY ASP SER GLY THR PHE SER SEQRES 9 A 677 SER MET GLN VAL ASP PRO TYR PHE LEU GLU ARG ILE ASP SEQRES 10 A 677 VAL LEU LYS GLY PRO SER SER VAL LEU TYR GLY ARG SER SEQRES 11 A 677 LEU PRO GLY GLY LEU VAL ALA LEU THR SER LYS LYS PRO SEQRES 12 A 677 LEU TYR GLU ASP TYR ARG GLN ILE THR GLY SER ILE GLY SEQRES 13 A 677 ASN MET GLY GLN LYS GLU MET GLY PHE ASP PHE SER GLY SEQRES 14 A 677 PRO LEU ASP GLU GLU LYS ARG ILE ALA TYR ARG LEU ILE SEQRES 15 A 677 GLY LEU GLY LYS GLY SER ASP THR GLN PHE ASP HIS VAL SEQRES 16 A 677 LYS GLU GLU ARG TYR ALA ILE ALA PRO THR LEU ALA ILE SEQRES 17 A 677 ASP PHE SER ASP ASP THR THR LEU THR LEU GLN GLY TYR SEQRES 18 A 677 LEU GLN HIS ASP PRO ASN GLY GLY TYR HIS GLY GLY VAL SEQRES 19 A 677 PRO ALA ASP GLY THR LEU SER HIS HIS ASN GLY ARG HIS SEQRES 20 A 677 ILE SER ARG GLU PHE PHE ASP GLY GLU PRO SER LYS ASP SEQRES 21 A 677 ASP PHE ASP ARG THR GLN ARG MET PHE GLY TYR GLN LEU SEQRES 22 A 677 GLU HIS ARG ILE ASP ASP VAL TRP SER ALA ARG GLN ASN SEQRES 23 A 677 PHE ARG TYR LEU ASP SER ASP VAL ASP LEU SER GLN VAL SEQRES 24 A 677 TYR ALA TYR GLY TRP SER ALA SER GLU PRO ASN LYS LEU SEQRES 25 A 677 ASN ARG TYR PHE SER GLY ALA ARG GLU HIS LEU GLN ALA SEQRES 26 A 677 TYR ILE VAL ASP ASN MET LEU GLN ALA GLU PHE ALA THR SEQRES 27 A 677 GLY ALA ALA ARG HIS THR LEU LEU THR GLY LEU ASP TYR SEQRES 28 A 677 GLN ARG ARG ARG THR VAL VAL ASP TRP ARG SER GLY SER SEQRES 29 A 677 ALA SER ALA LEU ASP ALA PHE ASN PRO VAL TYR GLY ASP SEQRES 30 A 677 ASP ALA ILE SER TYR PHE PRO ASP ASP ASN HIS THR ARG SEQRES 31 A 677 ARG LEU GLU GLN THR GLY VAL TYR LEU GLN ASP LEU ILE SEQRES 32 A 677 ASP ILE ASP GLN TRP ARG PHE SER LEU GLY LEU ARG GLN SEQRES 33 A 677 ASP TRP VAL SER VAL THR ASP LYS ASN ARG SER THR GLY SEQRES 34 A 677 SER LYS ALA ASP ASP ASP TRP GLU LYS PHE THR GLY ARG SEQRES 35 A 677 ILE GLY ALA LEU TYR LEU PHE ASP ASN GLY LEU ALA PRO SEQRES 36 A 677 TYR VAL SER TYR SER GLU SER PHE ASN PRO ASN ALA TYR SEQRES 37 A 677 SER ASP ALA SER GLY THR PRO LEU ALA PRO THR GLU GLY SEQRES 38 A 677 LYS GLN TRP GLU LEU GLY LEU LYS PHE GLN ALA PRO GLY SEQRES 39 A 677 SER ASN SER PHE TYR THR ALA SER LEU PHE HIS ILE THR SEQRES 40 A 677 GLN GLU ASN VAL ALA SER LYS GLU PRO GLN ASP ASN PHE SEQRES 41 A 677 TYR THR SER VAL GLY GLU VAL ARG SER GLN GLY LEU GLU SEQRES 42 A 677 LEU GLU ALA HIS THR GLN LEU SER ASP ASN LEU LYS LEU SEQRES 43 A 677 LEU GLY SER TYR THR TYR THR ASP ILE THR TYR THR LYS SEQRES 44 A 677 SER LEU ASP GLY ASN GLN GLY HIS THR PRO ASN GLN ALA SEQRES 45 A 677 PRO LYS HIS MET ALA SER LEU TRP ALA ASP TYR ALA PHE SEQRES 46 A 677 ASP ALA GLY PRO LEU SER GLY LEU SER ILE GLY GLY GLY SEQRES 47 A 677 ALA ARG TYR VAL GLY GLU THR TRP ALA ASP LYS GLU ASN SEQRES 48 A 677 THR LEU ARG VAL PRO ASP TYR THR LEU VAL ASP ALA ARG SEQRES 49 A 677 ILE GLY TYR ASP LEU GLY LYS LEU GLY LEU LYS GLY LEU SEQRES 50 A 677 ASP VAL SER LEU ASN ALA ASN ASN LEU LEU ASP LYS ASP SEQRES 51 A 677 TYR VAL ALA SER CYS TYR SER LEU ASP PHE CYS TYR PHE SEQRES 52 A 677 GLY GLU LYS ARG ASN VAL THR ALA THR VAL ASN TYR GLN SEQRES 53 A 677 PHE HET 0UE A 901 40 HET BNG A 902 12 HET BNG A 903 21 HET BNG A 904 21 HET BNG A 905 21 HET BNG A 906 21 HET BNG A 907 21 HET BNG A 908 21 HET BNG A 909 21 HET BNG A 910 10 HET BNG A 911 21 HET BNG A 912 21 HET BNG A 913 21 HET BNG A 914 21 HET GOL A 915 6 HET GOL A 916 6 HET GOL A 917 6 HET GOL A 918 6 HET GOL A 919 6 HET GOL A 920 6 HET GOL A 921 6 HET GOL A 922 6 HET SO4 A 923 5 HET SO4 A 924 5 HET SO4 A 925 5 HET SO4 A 926 5 HET NA A 927 1 HET NA A 928 1 HETNAM 0UE FERRIOXAMINE B HETNAM BNG NONYL BETA-D-GLUCOPYRANOSIDE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN BNG BETA-NONYLGLUCOSIDE; NONYL BETA-D-GLUCOSIDE; NONYL D- HETSYN 2 BNG GLUCOSIDE; NONYL GLUCOSIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 0UE C25 H45 FE N6 O8 FORMUL 3 BNG 13(C15 H30 O6) FORMUL 16 GOL 8(C3 H8 O3) FORMUL 24 SO4 4(O4 S 2-) FORMUL 28 NA 2(NA 1+) FORMUL 30 HOH *257(H2 O) HELIX 1 AA1 LEU A 173 THR A 175 5 3 HELIX 2 AA2 ARG A 184 THR A 190 1 7 HELIX 3 AA3 THR A 194 MET A 199 1 6 HELIX 4 AA4 ASN A 227 ASP A 230 5 4 HELIX 5 AA5 ASP A 252 TYR A 254 5 3 HELIX 6 AA6 SER A 266 GLY A 271 1 6 HELIX 7 AA7 GLU A 399 ASP A 403 5 5 HELIX 8 AA8 GLY A 773 GLY A 776 5 4 SHEET 1 AA1 2 THR A 154 ASP A 155 0 SHEET 2 AA1 2 LEU A 158 ALA A 159 -1 O LEU A 158 N ASP A 155 SHEET 1 AA2 2 HIS A 161 SER A 162 0 SHEET 2 AA2 2 LYS A 170 PRO A 171 -1 O LYS A 170 N SER A 162 SHEET 1 AA3 5 VAL A 179 THR A 183 0 SHEET 2 AA3 5 LEU A 256 LYS A 263 -1 O ILE A 259 N ILE A 182 SHEET 3 AA3 5 GLY A 277 SER A 283 -1 O ALA A 280 N ASP A 260 SHEET 4 AA3 5 ILE A 232 LEU A 234 1 N TYR A 233 O VAL A 279 SHEET 5 AA3 5 LEU A 237 LYS A 238 -1 O LEU A 237 N LEU A 234 SHEET 1 AA4 2 ILE A 205 PHE A 206 0 SHEET 2 AA4 2 VAL A 220 MET A 221 -1 O VAL A 220 N PHE A 206 SHEET 1 AA524 SER A 524 TYR A 525 0 SHEET 2 AA524 ALA A 484 ASP A 512 -1 N SER A 507 O SER A 524 SHEET 3 AA524 ASP A 529 ILE A 548 -1 O ARG A 533 N THR A 499 SHEET 4 AA524 TRP A 551 ASN A 568 -1 O PHE A 553 N ILE A 546 SHEET 5 AA524 LYS A 574 TYR A 590 -1 O TRP A 579 N VAL A 562 SHEET 6 AA524 LEU A 596 ASN A 607 -1 O VAL A 600 N ALA A 588 SHEET 7 AA524 THR A 622 PHE A 633 -1 O LYS A 632 N ALA A 597 SHEET 8 AA524 PHE A 641 SER A 656 -1 O LEU A 646 N LEU A 629 SHEET 9 AA524 THR A 665 LEU A 683 -1 O SER A 672 N ILE A 649 SHEET 10 AA524 LEU A 687 LYS A 702 -1 O ASP A 697 N GLN A 673 SHEET 11 AA524 HIS A 718 ALA A 727 -1 O MET A 719 N THR A 694 SHEET 12 AA524 LEU A 736 VAL A 745 -1 O ILE A 738 N TYR A 726 SHEET 13 AA524 TYR A 761 ASP A 771 -1 O GLY A 769 N SER A 737 SHEET 14 AA524 LEU A 780 ASN A 787 -1 O LEU A 784 N ILE A 768 SHEET 15 AA524 ASN A 811 GLN A 819 -1 O THR A 813 N ASN A 785 SHEET 16 AA524 TYR A 291 GLY A 299 -1 N ILE A 294 O TYR A 818 SHEET 17 AA524 LYS A 304 PRO A 313 -1 O GLU A 305 N SER A 297 SHEET 18 AA524 ILE A 320 ASP A 332 -1 O LEU A 324 N PHE A 310 SHEET 19 AA524 LYS A 339 SER A 354 -1 O GLU A 340 N SER A 331 SHEET 20 AA524 THR A 357 GLY A 371 -1 O LEU A 361 N LEU A 349 SHEET 21 AA524 ASP A 404 ARG A 419 -1 O GLU A 417 N THR A 358 SHEET 22 AA524 TRP A 424 TRP A 447 -1 O GLN A 428 N LEU A 416 SHEET 23 AA524 LYS A 454 THR A 481 -1 O MET A 474 N ARG A 427 SHEET 24 AA524 ALA A 484 ASP A 512 -1 O LEU A 511 N LEU A 455 SHEET 1 AA6 2 THR A 748 TRP A 749 0 SHEET 2 AA6 2 ARG A 757 VAL A 758 -1 O VAL A 758 N THR A 748 SHEET 1 AA7 2 VAL A 795 SER A 800 0 SHEET 2 AA7 2 PHE A 803 PHE A 806 -1 O PHE A 803 N TYR A 799 SSBOND 1 CYS A 798 CYS A 804 1555 1555 2.06 LINK O LYS A 263 NA NA A 927 1555 1555 2.77 LINK OE1 GLU A 628 NA NA A 927 1555 1555 3.14 LINK OE2 GLU A 628 NA NA A 927 1555 1555 2.77 CRYST1 94.890 94.890 177.612 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010539 0.006084 0.000000 0.00000 SCALE2 0.000000 0.012169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005630 0.00000