HEADER CYTOSOLIC PROTEIN 22-NOV-18 6I99 TITLE BONE MARROW TYROSINE KINASE IN CHROMOSOME X IN COMPLEX WITH A NEWLY TITLE 2 DESIGNED COVALENT INHIBITOR JS24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC TYROSINE-PROTEIN KINASE BMX; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BONE MARROW TYROSINE KINASE GENE IN CHROMOSOME X PROTEIN, COMPND 5 EPITHELIAL AND ENDOTHELIAL TYROSINE KINASE,ETK,NTK38; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: 2; SOURCE 6 CELL: HEMATOPOIETIC, ENDOTHELIAL, METASTATIC CARCINOMA; SOURCE 7 GENE: BMX; SOURCE 8 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 274590; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS CYTOPLASMIC TYROSINE-KINASE BMX, HOMO SAPIENS, CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.B.SOUSA,P.M.MATIAS,M.C.MARQUES,J.D.SEIXAS,G.J.L.BERNARDES REVDAT 3 24-JAN-24 6I99 1 JRNL REVDAT 2 04-NOV-20 6I99 1 JRNL REVDAT 1 27-MAY-20 6I99 0 JRNL AUTH J.D.SEIXAS,B.B.SOUSA,M.C.MARQUES,A.GUERREIRO,R.TRAQUETE, JRNL AUTH 2 T.RODRIGUES,I.S.ALBUQUERQUE,M.F.Q.SOUSA,A.R.LEMOS, JRNL AUTH 3 P.M.F.SOUSA,T.M.BANDEIRAS,D.WU,S.K.DOYLE,C.V.ROBINSON, JRNL AUTH 4 A.N.KOEHLER,F.CORZANA,P.M.MATIAS,G.J.L.BERNARDES JRNL TITL STRUCTURAL AND BIOPHYSICAL INSIGHTS INTO THE MODE OF JRNL TITL 2 COVALENT BINDING OF RATIONALLY DESIGNED POTENT BMX JRNL TITL 3 INHIBITORS JRNL REF CHEM.BIOL. 2020 JRNL REFN ISSN 1074-5521 JRNL DOI 10.1039/D0CB00033G REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.D.SEIXAS,B.B.SOUSA,M.C.MARQUES,A.GUERREIRO,R.TRAQUETE, REMARK 1 AUTH 2 T.RODRIGUES,I.S.ALBUQUERQUE,M.F.Q.SOUSA,A.R.LEMOS, REMARK 1 AUTH 3 P.M.F.SOUSA,T.M.BANDEIRAS,D.WU,S.K.DOYLE,C.V.ROBINSON, REMARK 1 AUTH 4 A.N.KOEHLER,F.CORZANA,P.M.MATIAS,G.J.L.BERNARDES REMARK 1 TITL RATIONALLY DESIGNED POTENT BMX INHIBITORS REVEALS MODE OF REMARK 1 TITL 2 COVALENT BINDING AT THE ATOMIC LEVEL REMARK 1 REF CHEMRXIV 2020 REMARK 1 REFN ISSN 2573-2293 REMARK 1 DOI 10.26434/CHEMRXIV.11558310.V1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 57.3 REMARK 3 NUMBER OF REFLECTIONS : 23504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.5590 - 4.0010 0.94 4657 284 0.1926 0.2118 REMARK 3 2 4.0010 - 3.1757 0.96 4702 242 0.2134 0.2596 REMARK 3 3 3.1757 - 2.7743 0.98 4771 225 0.2609 0.2776 REMARK 3 4 2.7743 - 2.5206 0.76 3708 177 0.2840 0.3180 REMARK 3 5 2.5206 - 2.3399 0.50 2384 139 0.2960 0.2944 REMARK 3 6 2.3399 - 2.2020 0.28 1342 78 0.3053 0.3991 REMARK 3 7 2.2020 - 2.0917 0.11 558 26 0.3012 0.2674 REMARK 3 8 2.0917 - 2.0010 0.04 198 13 0.3296 0.4460 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.95 REMARK 3 B_SOL : -2.21 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4506 REMARK 3 ANGLE : 0.603 6090 REMARK 3 CHIRALITY : 0.041 631 REMARK 3 PLANARITY : 0.003 756 REMARK 3 DIHEDRAL : 11.280 2643 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2146 -18.3299 10.0771 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.3334 REMARK 3 T33: 0.1342 T12: -0.0150 REMARK 3 T13: -0.0358 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.7889 L22: 1.2474 REMARK 3 L33: 1.2201 L12: -0.4213 REMARK 3 L13: 0.5483 L23: -0.3363 REMARK 3 S TENSOR REMARK 3 S11: -0.1280 S12: 0.2951 S13: -0.0835 REMARK 3 S21: -0.1255 S22: 0.0498 S23: -0.0015 REMARK 3 S31: 0.0447 S32: -0.0110 S33: -0.0062 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 454 THROUGH 549 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5551 -10.3682 22.6104 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.1827 REMARK 3 T33: 0.0944 T12: -0.0127 REMARK 3 T13: -0.0239 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.5711 L22: 0.7064 REMARK 3 L33: 1.7043 L12: -0.3009 REMARK 3 L13: 0.6909 L23: 0.0278 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: 0.0430 S13: -0.0564 REMARK 3 S21: 0.0270 S22: -0.0172 S23: -0.0375 REMARK 3 S31: -0.0480 S32: 0.1210 S33: -0.0017 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 550 THROUGH 626 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9926 -12.7351 35.0708 REMARK 3 T TENSOR REMARK 3 T11: 0.1030 T22: 0.2896 REMARK 3 T33: 0.0547 T12: 0.0035 REMARK 3 T13: -0.0779 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 1.3236 L22: 0.5335 REMARK 3 L33: 1.0167 L12: -0.1999 REMARK 3 L13: 0.6206 L23: 0.0624 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: -0.1406 S13: -0.0208 REMARK 3 S21: 0.0659 S22: -0.0447 S23: -0.0505 REMARK 3 S31: 0.1659 S32: -0.1949 S33: -0.0699 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 627 THROUGH 671 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2220 -3.4664 42.5483 REMARK 3 T TENSOR REMARK 3 T11: 0.1388 T22: 0.1909 REMARK 3 T33: 0.0535 T12: -0.0022 REMARK 3 T13: -0.0506 T23: -0.1075 REMARK 3 L TENSOR REMARK 3 L11: 0.2362 L22: 0.3960 REMARK 3 L33: 0.7602 L12: -0.1034 REMARK 3 L13: 0.0509 L23: -0.1410 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.1819 S13: 0.0855 REMARK 3 S21: 0.2138 S22: -0.0775 S23: 0.0000 REMARK 3 S31: 0.0988 S32: -0.0451 S33: -0.2601 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 411 THROUGH 466 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0400 -19.3519 20.7943 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.2663 REMARK 3 T33: 0.0547 T12: 0.0416 REMARK 3 T13: -0.0637 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 1.5691 L22: 0.2390 REMARK 3 L33: 0.3256 L12: 0.2500 REMARK 3 L13: -0.1372 L23: -0.0432 REMARK 3 S TENSOR REMARK 3 S11: -0.0791 S12: -0.1462 S13: 0.0590 REMARK 3 S21: 0.1403 S22: 0.0255 S23: -0.0344 REMARK 3 S31: -0.0024 S32: -0.1101 S33: -0.0247 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 467 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7101 -11.6143 8.4207 REMARK 3 T TENSOR REMARK 3 T11: 0.1842 T22: 0.1654 REMARK 3 T33: 0.1145 T12: -0.0059 REMARK 3 T13: 0.0032 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.8712 L22: 1.1325 REMARK 3 L33: 1.6684 L12: 0.6949 REMARK 3 L13: -0.1363 L23: -0.5635 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.0798 S13: -0.1749 REMARK 3 S21: 0.1872 S22: -0.0414 S23: 0.0991 REMARK 3 S31: 0.0419 S32: -0.0482 S33: -0.0374 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 531 THROUGH 575 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2233 -12.1259 5.0188 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.2216 REMARK 3 T33: 0.0509 T12: -0.0352 REMARK 3 T13: -0.0039 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.2689 L22: 0.2435 REMARK 3 L33: 0.8993 L12: 0.0097 REMARK 3 L13: -0.0333 L23: 0.0292 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: -0.0981 S13: 0.0226 REMARK 3 S21: 0.0502 S22: -0.0452 S23: -0.0139 REMARK 3 S31: -0.1912 S32: -0.0046 S33: -0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 576 THROUGH 671 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7347 -10.8418 -9.6253 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.2147 REMARK 3 T33: 0.0396 T12: 0.0227 REMARK 3 T13: 0.0200 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.2132 L22: 0.2039 REMARK 3 L33: 0.3723 L12: 0.0946 REMARK 3 L13: 0.0394 L23: -0.2283 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.1639 S13: -0.0473 REMARK 3 S21: -0.1023 S22: -0.0345 S23: -0.0636 REMARK 3 S31: 0.1061 S32: 0.1947 S33: -0.1641 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NCS USED BETWEEN CHAIN A AND CHAIN B REMARK 3 TLS REFINEMENT OF ANISOTROPIC ADPS - 4 NON-EQUIVALENT RIGID BODIES REMARK 3 WERE DEFINED PER PROTEIN CHAIN. REMARK 3 HYDROGEN ATOMS WERE INCLUDED IN CALCULATED POSITIONS. REMARK 4 REMARK 4 6I99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200013019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23531 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 72.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.18100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IMIDAZOLE-MALATE, PEG 600, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.64500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 GLU A 404 REMARK 465 ASN A 405 REMARK 465 LYS A 672 REMARK 465 ASP A 673 REMARK 465 LYS A 674 REMARK 465 HIS A 675 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 GLU B 404 REMARK 465 ASN B 405 REMARK 465 LEU B 406 REMARK 465 TYR B 407 REMARK 465 PHE B 408 REMARK 465 GLN B 409 REMARK 465 GLY B 410 REMARK 465 LYS B 672 REMARK 465 ASP B 673 REMARK 465 LYS B 674 REMARK 465 HIS B 675 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG B 559 O HOH B 802 1.57 REMARK 500 H ARG B 535 O MET B 557 1.60 REMARK 500 O HOH A 870 O HOH A 873 2.07 REMARK 500 O HOH A 821 O HOH A 870 2.07 REMARK 500 O HOH A 845 O HOH A 858 2.08 REMARK 500 O HOH B 845 O HOH B 853 2.11 REMARK 500 O HOH A 824 O HOH A 859 2.13 REMARK 500 OG SER A 468 NZ LYS A 474 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 439 -42.30 -150.63 REMARK 500 THR A 463 -57.43 -131.37 REMARK 500 ASP A 536 56.33 -148.90 REMARK 500 GLN B 439 -43.62 -149.72 REMARK 500 GLU B 482 -155.38 -119.60 REMARK 500 ASP B 536 57.63 -150.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 482 TYR B 483 -143.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H88 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide H88 B 701 and CYS B REMARK 800 496 DBREF 6I99 A 411 675 UNP P51813 BMX_HUMAN 411 675 DBREF 6I99 B 411 675 UNP P51813 BMX_HUMAN 411 675 SEQADV 6I99 HIS A 398 UNP P51813 EXPRESSION TAG SEQADV 6I99 HIS A 399 UNP P51813 EXPRESSION TAG SEQADV 6I99 HIS A 400 UNP P51813 EXPRESSION TAG SEQADV 6I99 HIS A 401 UNP P51813 EXPRESSION TAG SEQADV 6I99 HIS A 402 UNP P51813 EXPRESSION TAG SEQADV 6I99 HIS A 403 UNP P51813 EXPRESSION TAG SEQADV 6I99 GLU A 404 UNP P51813 EXPRESSION TAG SEQADV 6I99 ASN A 405 UNP P51813 EXPRESSION TAG SEQADV 6I99 LEU A 406 UNP P51813 EXPRESSION TAG SEQADV 6I99 TYR A 407 UNP P51813 EXPRESSION TAG SEQADV 6I99 PHE A 408 UNP P51813 EXPRESSION TAG SEQADV 6I99 GLN A 409 UNP P51813 EXPRESSION TAG SEQADV 6I99 GLY A 410 UNP P51813 EXPRESSION TAG SEQADV 6I99 LYS A 432 UNP P51813 GLN 432 ENGINEERED MUTATION SEQADV 6I99 MET A 611 UNP P51813 GLN 611 ENGINEERED MUTATION SEQADV 6I99 THR A 617 UNP P51813 ASP 617 ENGINEERED MUTATION SEQADV 6I99 GLU A 620 UNP P51813 GLN 620 ENGINEERED MUTATION SEQADV 6I99 HIS B 398 UNP P51813 EXPRESSION TAG SEQADV 6I99 HIS B 399 UNP P51813 EXPRESSION TAG SEQADV 6I99 HIS B 400 UNP P51813 EXPRESSION TAG SEQADV 6I99 HIS B 401 UNP P51813 EXPRESSION TAG SEQADV 6I99 HIS B 402 UNP P51813 EXPRESSION TAG SEQADV 6I99 HIS B 403 UNP P51813 EXPRESSION TAG SEQADV 6I99 GLU B 404 UNP P51813 EXPRESSION TAG SEQADV 6I99 ASN B 405 UNP P51813 EXPRESSION TAG SEQADV 6I99 LEU B 406 UNP P51813 EXPRESSION TAG SEQADV 6I99 TYR B 407 UNP P51813 EXPRESSION TAG SEQADV 6I99 PHE B 408 UNP P51813 EXPRESSION TAG SEQADV 6I99 GLN B 409 UNP P51813 EXPRESSION TAG SEQADV 6I99 GLY B 410 UNP P51813 EXPRESSION TAG SEQADV 6I99 LYS B 432 UNP P51813 GLN 432 ENGINEERED MUTATION SEQADV 6I99 MET B 611 UNP P51813 GLN 611 ENGINEERED MUTATION SEQADV 6I99 THR B 617 UNP P51813 ASP 617 ENGINEERED MUTATION SEQADV 6I99 GLU B 620 UNP P51813 GLN 620 ENGINEERED MUTATION SEQRES 1 A 278 HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN GLY SEQRES 2 A 278 GLU LEU LYS ARG GLU GLU ILE THR LEU LEU LYS GLU LEU SEQRES 3 A 278 GLY SER GLY GLN PHE GLY VAL VAL LYS LEU GLY LYS TRP SEQRES 4 A 278 LYS GLY GLN TYR ASP VAL ALA VAL LYS MET ILE LYS GLU SEQRES 5 A 278 GLY SER MET SER GLU ASP GLU PHE PHE GLN GLU ALA GLN SEQRES 6 A 278 THR MET MET LYS LEU SER HIS PRO LYS LEU VAL LYS PHE SEQRES 7 A 278 TYR GLY VAL CYS SER LYS GLU TYR PRO ILE TYR ILE VAL SEQRES 8 A 278 THR GLU TYR ILE SER ASN GLY CYS LEU LEU ASN TYR LEU SEQRES 9 A 278 ARG SER HIS GLY LYS GLY LEU GLU PRO SER GLN LEU LEU SEQRES 10 A 278 GLU MET CYS TYR ASP VAL CYS GLU GLY MET ALA PHE LEU SEQRES 11 A 278 GLU SER HIS GLN PHE ILE HIS ARG ASP LEU ALA ALA ARG SEQRES 12 A 278 ASN CYS LEU VAL ASP ARG ASP LEU CYS VAL LYS VAL SER SEQRES 13 A 278 ASP PHE GLY MET THR ARG TYR VAL LEU ASP ASP GLN TYR SEQRES 14 A 278 VAL SER SER VAL GLY THR LYS PHE PRO VAL LYS TRP SER SEQRES 15 A 278 ALA PRO GLU VAL PHE HIS TYR PHE LYS TYR SER SER LYS SEQRES 16 A 278 SER ASP VAL TRP ALA PHE GLY ILE LEU MET TRP GLU VAL SEQRES 17 A 278 PHE SER LEU GLY LYS MET PRO TYR ASP LEU TYR THR ASN SEQRES 18 A 278 SER GLU VAL VAL LEU LYS VAL SER GLN GLY HIS ARG LEU SEQRES 19 A 278 TYR ARG PRO HIS LEU ALA SER ASP THR ILE TYR GLN ILE SEQRES 20 A 278 MET TYR SER CYS TRP HIS GLU LEU PRO GLU LYS ARG PRO SEQRES 21 A 278 THR PHE GLN GLN LEU LEU SER SER ILE GLU PRO LEU ARG SEQRES 22 A 278 GLU LYS ASP LYS HIS SEQRES 1 B 278 HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN GLY SEQRES 2 B 278 GLU LEU LYS ARG GLU GLU ILE THR LEU LEU LYS GLU LEU SEQRES 3 B 278 GLY SER GLY GLN PHE GLY VAL VAL LYS LEU GLY LYS TRP SEQRES 4 B 278 LYS GLY GLN TYR ASP VAL ALA VAL LYS MET ILE LYS GLU SEQRES 5 B 278 GLY SER MET SER GLU ASP GLU PHE PHE GLN GLU ALA GLN SEQRES 6 B 278 THR MET MET LYS LEU SER HIS PRO LYS LEU VAL LYS PHE SEQRES 7 B 278 TYR GLY VAL CYS SER LYS GLU TYR PRO ILE TYR ILE VAL SEQRES 8 B 278 THR GLU TYR ILE SER ASN GLY CYS LEU LEU ASN TYR LEU SEQRES 9 B 278 ARG SER HIS GLY LYS GLY LEU GLU PRO SER GLN LEU LEU SEQRES 10 B 278 GLU MET CYS TYR ASP VAL CYS GLU GLY MET ALA PHE LEU SEQRES 11 B 278 GLU SER HIS GLN PHE ILE HIS ARG ASP LEU ALA ALA ARG SEQRES 12 B 278 ASN CYS LEU VAL ASP ARG ASP LEU CYS VAL LYS VAL SER SEQRES 13 B 278 ASP PHE GLY MET THR ARG TYR VAL LEU ASP ASP GLN TYR SEQRES 14 B 278 VAL SER SER VAL GLY THR LYS PHE PRO VAL LYS TRP SER SEQRES 15 B 278 ALA PRO GLU VAL PHE HIS TYR PHE LYS TYR SER SER LYS SEQRES 16 B 278 SER ASP VAL TRP ALA PHE GLY ILE LEU MET TRP GLU VAL SEQRES 17 B 278 PHE SER LEU GLY LYS MET PRO TYR ASP LEU TYR THR ASN SEQRES 18 B 278 SER GLU VAL VAL LEU LYS VAL SER GLN GLY HIS ARG LEU SEQRES 19 B 278 TYR ARG PRO HIS LEU ALA SER ASP THR ILE TYR GLN ILE SEQRES 20 B 278 MET TYR SER CYS TRP HIS GLU LEU PRO GLU LYS ARG PRO SEQRES 21 B 278 THR PHE GLN GLN LEU LEU SER SER ILE GLU PRO LEU ARG SEQRES 22 B 278 GLU LYS ASP LYS HIS HET H88 A 701 63 HET H88 B 701 63 HETNAM H88 ~{N}-[2-METHYL-5-[8-[4-(METHYLSULFONYLAMINO)PHENYL]-2- HETNAM 2 H88 OXIDANYLIDENE-BENZO[H][1,6]NAPHTHYRIDIN-1-YL]PHENYL]- HETNAM 3 H88 3-OXIDANYL-PROPANAMIDE FORMUL 3 H88 2(C29 H26 N4 O5 S) FORMUL 5 HOH *126(H2 O) HELIX 1 AA1 LYS A 413 GLU A 415 5 3 HELIX 2 AA2 SER A 453 THR A 463 1 11 HELIX 3 AA3 CYS A 496 GLY A 505 1 10 HELIX 4 AA4 LYS A 506 LEU A 508 5 3 HELIX 5 AA5 GLU A 509 SER A 529 1 21 HELIX 6 AA6 ALA A 538 ARG A 540 5 3 HELIX 7 AA7 PRO A 575 SER A 579 5 5 HELIX 8 AA8 ALA A 580 HIS A 585 1 6 HELIX 9 AA9 LYS A 592 SER A 607 1 16 HELIX 10 AB1 THR A 617 GLN A 627 1 11 HELIX 11 AB2 SER A 638 CYS A 648 1 11 HELIX 12 AB3 LEU A 652 ARG A 656 5 5 HELIX 13 AB4 THR A 658 GLU A 667 1 10 HELIX 14 AB5 PRO A 668 ARG A 670 5 3 HELIX 15 AB6 LYS B 413 GLU B 415 5 3 HELIX 16 AB7 SER B 453 LEU B 467 1 15 HELIX 17 AB8 CYS B 496 GLY B 505 1 10 HELIX 18 AB9 LYS B 506 LEU B 508 5 3 HELIX 19 AC1 GLU B 509 HIS B 530 1 22 HELIX 20 AC2 ALA B 538 ARG B 540 5 3 HELIX 21 AC3 PRO B 575 SER B 579 5 5 HELIX 22 AC4 ALA B 580 HIS B 585 1 6 HELIX 23 AC5 LYS B 592 SER B 607 1 16 HELIX 24 AC6 THR B 617 GLN B 627 1 11 HELIX 25 AC7 SER B 638 CYS B 648 1 11 HELIX 26 AC8 LEU B 652 ARG B 656 5 5 HELIX 27 AC9 THR B 658 GLU B 667 1 10 HELIX 28 AD1 PRO B 668 ARG B 670 5 3 SHEET 1 AA1 5 ILE A 417 SER A 425 0 SHEET 2 AA1 5 VAL A 430 TRP A 436 -1 O LEU A 433 N LYS A 421 SHEET 3 AA1 5 TYR A 440 ILE A 447 -1 O TYR A 440 N TRP A 436 SHEET 4 AA1 5 ILE A 485 GLU A 490 -1 O ILE A 487 N LYS A 445 SHEET 5 AA1 5 PHE A 475 CYS A 479 -1 N GLY A 477 O VAL A 488 SHEET 1 AA2 2 PHE A 532 HIS A 534 0 SHEET 2 AA2 2 THR A 558 TYR A 560 -1 O ARG A 559 N ILE A 533 SHEET 1 AA3 2 CYS A 542 VAL A 544 0 SHEET 2 AA3 2 VAL A 550 VAL A 552 -1 O LYS A 551 N LEU A 543 SHEET 1 AA4 2 TYR A 566 SER A 568 0 SHEET 2 AA4 2 LYS A 588 SER A 590 -1 O TYR A 589 N VAL A 567 SHEET 1 AA5 5 ILE B 417 SER B 425 0 SHEET 2 AA5 5 VAL B 430 TRP B 436 -1 O LEU B 433 N LYS B 421 SHEET 3 AA5 5 TYR B 440 ILE B 447 -1 O TYR B 440 N TRP B 436 SHEET 4 AA5 5 ILE B 485 GLU B 490 -1 O ILE B 485 N ILE B 447 SHEET 5 AA5 5 PHE B 475 CYS B 479 -1 N TYR B 476 O VAL B 488 SHEET 1 AA6 2 PHE B 532 HIS B 534 0 SHEET 2 AA6 2 THR B 558 TYR B 560 -1 O ARG B 559 N ILE B 533 SHEET 1 AA7 2 CYS B 542 VAL B 544 0 SHEET 2 AA7 2 VAL B 550 VAL B 552 -1 O LYS B 551 N LEU B 543 SHEET 1 AA8 2 TYR B 566 SER B 568 0 SHEET 2 AA8 2 LYS B 588 SER B 590 -1 O TYR B 589 N VAL B 567 LINK SG CYS A 496 C1 H88 A 701 1555 1555 1.84 LINK SG CYS B 496 C1 H88 B 701 1555 1555 1.86 CISPEP 1 TYR A 483 PRO A 484 0 3.30 SITE 1 AC1 16 VAL A 431 ALA A 443 LYS A 445 THR A 489 SITE 2 AC1 16 GLU A 490 TYR A 491 ILE A 492 SER A 493 SITE 3 AC1 16 GLY A 495 CYS A 496 ASN A 499 ARG A 540 SITE 4 AC1 16 LEU A 543 HOH A 812 LEU B 420 LYS B 435 SITE 1 AC2 19 LEU A 420 LYS A 435 LYS B 445 THR B 489 SITE 2 AC2 19 GLU B 490 ILE B 492 SER B 493 GLY B 495 SITE 3 AC2 19 LEU B 497 LEU B 498 ASN B 499 TYR B 500 SITE 4 AC2 19 ARG B 540 CYS B 542 LEU B 543 HOH B 806 SITE 5 AC2 19 HOH B 808 HOH B 819 HOH B 827 CRYST1 66.714 63.290 74.962 90.00 104.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014989 0.000000 0.003890 0.00000 SCALE2 0.000000 0.015800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013782 0.00000