HEADER CYTOSOLIC PROTEIN 26-NOV-18 6IA7 TITLE T. BRUCEI IFT22 GTP-BOUND CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTRAFLAGELLAR TRANSPORT PROTEIN 22; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI (STRAIN 927/4 SOURCE 3 GUTAT10.1); SOURCE 4 ORGANISM_TAXID: 185431; SOURCE 5 STRAIN: 927/4 GUTAT10.1; SOURCE 6 GENE: IFT22, TB11.01.8590; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTRAFLAGELLAR TRANSPORT PROTEIN 22, CILIUM FORMATION, RAB-LIKE, KEYWDS 2 GTPASE, RABL5, CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.WACHTER,J.BASQUIN,E.LORENTZEN REVDAT 3 08-MAY-19 6IA7 1 JRNL REVDAT 2 17-APR-19 6IA7 1 JRNL REVDAT 1 10-APR-19 6IA7 0 JRNL AUTH S.WACHTER,J.JUNG,S.SHAFIQ,J.BASQUIN,C.FORT,P.BASTIN, JRNL AUTH 2 E.LORENTZEN JRNL TITL BINDING OF IFT22 TO THE INTRAFLAGELLAR TRANSPORT COMPLEX IS JRNL TITL 2 ESSENTIAL FOR FLAGELLUM ASSEMBLY. JRNL REF EMBO J. V. 38 2019 JRNL REFN ESSN 1460-2075 JRNL PMID 30940671 JRNL DOI 10.15252/EMBJ.2018101251 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3174 - 4.5948 0.95 2446 127 0.2068 0.2953 REMARK 3 2 4.5948 - 3.6498 0.95 2473 119 0.1819 0.2139 REMARK 3 3 3.6498 - 3.1893 0.94 2417 146 0.2000 0.2432 REMARK 3 4 3.1893 - 2.8980 0.95 2423 129 0.2249 0.2793 REMARK 3 5 2.8980 - 2.6905 0.95 2408 140 0.2449 0.2852 REMARK 3 6 2.6905 - 2.5320 0.95 2433 134 0.2765 0.2996 REMARK 3 7 2.5320 - 2.4053 0.95 2438 133 0.2867 0.2711 REMARK 3 8 2.4053 - 2.3006 0.95 2422 128 0.2907 0.3423 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2337 REMARK 3 ANGLE : 0.899 3193 REMARK 3 CHIRALITY : 0.052 374 REMARK 3 PLANARITY : 0.006 394 REMARK 3 DIHEDRAL : 14.164 1366 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -5.8982 2.6756 -22.4154 REMARK 3 T TENSOR REMARK 3 T11: 0.6739 T22: 0.4362 REMARK 3 T33: 0.3923 T12: -0.2447 REMARK 3 T13: -0.0605 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 1.5009 L22: 2.9023 REMARK 3 L33: 1.8946 L12: 0.9825 REMARK 3 L13: -0.7452 L23: -1.3087 REMARK 3 S TENSOR REMARK 3 S11: -0.1269 S12: 0.2630 S13: -0.1453 REMARK 3 S21: 0.2874 S22: 0.1232 S23: -0.3493 REMARK 3 S31: -0.0287 S32: 0.0170 S33: -0.0038 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200013049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 2.08800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG3350, 50 MM NACACODYLATE REMARK 280 PH 6.5 AND 200 MM CALCIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.81433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 175.62867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.72150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 219.53583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.90717 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 30 REMARK 465 THR A 31 REMARK 465 PRO A 32 REMARK 465 THR A 33 REMARK 465 LYS A 34 REMARK 465 GLU A 35 REMARK 465 TYR A 36 REMARK 465 HIS A 37 REMARK 465 ASP A 53 REMARK 465 THR A 54 REMARK 465 ARG A 55 REMARK 465 ARG A 56 REMARK 465 SER A 57 REMARK 465 GLY A 58 REMARK 465 ARG A 59 REMARK 465 GLN A 60 REMARK 465 ALA A 61 REMARK 465 ALA A 62 REMARK 465 GLY A 63 REMARK 465 LEU A 64 REMARK 465 LYS A 65 REMARK 465 LYS A 66 REMARK 465 SER A 77 REMARK 465 SER A 78 REMARK 465 LYS A 79 REMARK 465 HIS A 80 REMARK 465 GLN A 81 REMARK 465 ALA A 82 REMARK 465 GLY A 83 REMARK 465 LEU A 118 REMARK 465 ASN A 119 REMARK 465 GLN A 120 REMARK 465 ASP A 121 REMARK 465 GLU A 122 REMARK 465 LEU A 123 REMARK 465 ASP A 124 REMARK 465 ASP A 125 REMARK 465 ASP A 126 REMARK 465 ASN A 127 REMARK 465 ASN A 128 REMARK 465 PHE A 129 REMARK 465 LYS A 130 REMARK 465 MET A 131 REMARK 465 GLU A 201 REMARK 465 ASN A 202 REMARK 465 ASP A 203 REMARK 465 LEU A 204 REMARK 465 LEU A 205 REMARK 465 GLN A 206 REMARK 465 LYS A 207 REMARK 465 GLU A 208 REMARK 465 ARG A 209 REMARK 465 GLU A 210 REMARK 465 ALA A 211 REMARK 465 LYS A 212 REMARK 465 ASP A 213 REMARK 465 TYR A 214 REMARK 465 PRO A 215 REMARK 465 ARG A 216 REMARK 465 LEU A 217 REMARK 465 LYS A 218 REMARK 465 ARG A 219 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 LEU B 5 REMARK 465 ARG B 29 REMARK 465 ASP B 30 REMARK 465 THR B 31 REMARK 465 PRO B 32 REMARK 465 THR B 33 REMARK 465 LYS B 34 REMARK 465 GLU B 35 REMARK 465 TYR B 36 REMARK 465 HIS B 37 REMARK 465 GLU B 38 REMARK 465 ALA B 50 REMARK 465 LEU B 51 REMARK 465 ASP B 52 REMARK 465 ASP B 53 REMARK 465 THR B 54 REMARK 465 ARG B 55 REMARK 465 ARG B 56 REMARK 465 SER B 57 REMARK 465 GLY B 58 REMARK 465 ARG B 59 REMARK 465 GLN B 60 REMARK 465 ALA B 61 REMARK 465 ALA B 62 REMARK 465 GLY B 63 REMARK 465 LEU B 64 REMARK 465 LYS B 65 REMARK 465 SER B 78 REMARK 465 LYS B 79 REMARK 465 HIS B 80 REMARK 465 GLN B 81 REMARK 465 ALA B 82 REMARK 465 GLY B 83 REMARK 465 TRP B 84 REMARK 465 ALA B 117 REMARK 465 LEU B 118 REMARK 465 ASN B 119 REMARK 465 GLN B 120 REMARK 465 ASP B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 ASP B 124 REMARK 465 ASP B 125 REMARK 465 ASP B 126 REMARK 465 ASN B 127 REMARK 465 ASN B 128 REMARK 465 PHE B 129 REMARK 465 LYS B 130 REMARK 465 MET B 131 REMARK 465 ARG B 132 REMARK 465 VAL B 133 REMARK 465 GLU B 201 REMARK 465 ASN B 202 REMARK 465 ASP B 203 REMARK 465 LEU B 204 REMARK 465 LEU B 205 REMARK 465 GLN B 206 REMARK 465 LYS B 207 REMARK 465 GLU B 208 REMARK 465 ARG B 209 REMARK 465 GLU B 210 REMARK 465 ALA B 211 REMARK 465 LYS B 212 REMARK 465 ASP B 213 REMARK 465 TYR B 214 REMARK 465 PRO B 215 REMARK 465 ARG B 216 REMARK 465 LEU B 217 REMARK 465 LYS B 218 REMARK 465 ARG B 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 5 CG CD1 CD2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 ASP A 52 CG OD1 OD2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 VAL A 133 CG1 CG2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 VAL B 6 CG1 CG2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 ASP B 154 CG OD1 OD2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 GLN B 163 CG CD OE1 NE2 REMARK 470 GLN B 165 CG CD OE1 NE2 REMARK 470 GLU B 200 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 13 NZ LYS B 18 2.16 REMARK 500 O HOH A 415 O HOH B 412 2.17 REMARK 500 O HIS A 144 OG SER A 173 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 100 NZ LYS B 103 6555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 13.25 54.54 REMARK 500 ASN A 90 14.64 57.51 REMARK 500 ALA B 88 -13.90 -142.80 REMARK 500 ASN B 90 26.27 48.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 145 SER B 146 -148.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 19 OG REMARK 620 2 GTP A 301 O1G 132.4 REMARK 620 3 GTP A 301 O1B 81.7 74.4 REMARK 620 4 HOH A 402 O 81.2 74.2 116.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 178 O REMARK 620 2 SER B 178 O 95.6 REMARK 620 3 HOH A 417 O 96.8 165.0 REMARK 620 4 HOH A 415 O 68.6 79.6 97.2 REMARK 620 5 HOH B 412 O 118.1 72.2 94.4 49.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 19 OG REMARK 620 2 GTP B 301 O3G 153.8 REMARK 620 3 GTP B 301 O2B 73.6 86.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 DBREF 6IA7 A 1 219 UNP Q381A3 IFT22_TRYB2 1 219 DBREF 6IA7 B 1 219 UNP Q381A3 IFT22_TRYB2 1 219 SEQADV 6IA7 GLY A -3 UNP Q381A3 EXPRESSION TAG SEQADV 6IA7 ALA A -2 UNP Q381A3 EXPRESSION TAG SEQADV 6IA7 ALA A -1 UNP Q381A3 EXPRESSION TAG SEQADV 6IA7 SER A 0 UNP Q381A3 EXPRESSION TAG SEQADV 6IA7 GLY B -3 UNP Q381A3 EXPRESSION TAG SEQADV 6IA7 ALA B -2 UNP Q381A3 EXPRESSION TAG SEQADV 6IA7 ALA B -1 UNP Q381A3 EXPRESSION TAG SEQADV 6IA7 SER B 0 UNP Q381A3 EXPRESSION TAG SEQRES 1 A 223 GLY ALA ALA SER MET SER ASP ASP LEU VAL LYS ILE LEU SEQRES 2 A 223 VAL LEU GLY PRO SER LYS SER GLY LYS SER THR VAL THR SEQRES 3 A 223 ASN PHE LEU ALA GLY THR ARG ASP THR PRO THR LYS GLU SEQRES 4 A 223 TYR HIS GLU THR ASN PRO LEU ARG VAL LEU GLU VAL GLU SEQRES 5 A 223 ILE ALA LEU ASP ASP THR ARG ARG SER GLY ARG GLN ALA SEQRES 6 A 223 ALA GLY LEU LYS LYS ALA VAL VAL GLN LEU TRP ASP VAL SEQRES 7 A 223 GLY GLY SER SER LYS HIS GLN ALA GLY TRP PRO ALA ILE SEQRES 8 A 223 ALA SER ASN ALA ASP GLY ILE ILE TYR VAL PHE ASN PRO SEQRES 9 A 223 GLU VAL LYS GLY SER GLU LYS GLU LEU LEU LEU TRP TYR SEQRES 10 A 223 LYS ASN PHE ALA LEU ASN GLN ASP GLU LEU ASP ASP ASP SEQRES 11 A 223 ASN ASN PHE LYS MET ARG VAL THR ASP GLY HIS SER LEU SEQRES 12 A 223 ILE PHE SER HIS HIS SER SER LEU PRO GLU PHE ALA VAL SEQRES 13 A 223 GLY ASP ASN ALA ILE PRO PRO MET PRO LYS GLN LEU GLN SEQRES 14 A 223 GLY ILE ARG ALA LEU GLU THR SER LEU ASP TYR GLN SER SEQRES 15 A 223 ASP ASN PHE LYS GLU ALA PHE ASP ALA LEU VAL GLU GLN SEQRES 16 A 223 ILE ILE ALA SER ARG LEU ALA ALA GLU GLU ASN ASP LEU SEQRES 17 A 223 LEU GLN LYS GLU ARG GLU ALA LYS ASP TYR PRO ARG LEU SEQRES 18 A 223 LYS ARG SEQRES 1 B 223 GLY ALA ALA SER MET SER ASP ASP LEU VAL LYS ILE LEU SEQRES 2 B 223 VAL LEU GLY PRO SER LYS SER GLY LYS SER THR VAL THR SEQRES 3 B 223 ASN PHE LEU ALA GLY THR ARG ASP THR PRO THR LYS GLU SEQRES 4 B 223 TYR HIS GLU THR ASN PRO LEU ARG VAL LEU GLU VAL GLU SEQRES 5 B 223 ILE ALA LEU ASP ASP THR ARG ARG SER GLY ARG GLN ALA SEQRES 6 B 223 ALA GLY LEU LYS LYS ALA VAL VAL GLN LEU TRP ASP VAL SEQRES 7 B 223 GLY GLY SER SER LYS HIS GLN ALA GLY TRP PRO ALA ILE SEQRES 8 B 223 ALA SER ASN ALA ASP GLY ILE ILE TYR VAL PHE ASN PRO SEQRES 9 B 223 GLU VAL LYS GLY SER GLU LYS GLU LEU LEU LEU TRP TYR SEQRES 10 B 223 LYS ASN PHE ALA LEU ASN GLN ASP GLU LEU ASP ASP ASP SEQRES 11 B 223 ASN ASN PHE LYS MET ARG VAL THR ASP GLY HIS SER LEU SEQRES 12 B 223 ILE PHE SER HIS HIS SER SER LEU PRO GLU PHE ALA VAL SEQRES 13 B 223 GLY ASP ASN ALA ILE PRO PRO MET PRO LYS GLN LEU GLN SEQRES 14 B 223 GLY ILE ARG ALA LEU GLU THR SER LEU ASP TYR GLN SER SEQRES 15 B 223 ASP ASN PHE LYS GLU ALA PHE ASP ALA LEU VAL GLU GLN SEQRES 16 B 223 ILE ILE ALA SER ARG LEU ALA ALA GLU GLU ASN ASP LEU SEQRES 17 B 223 LEU GLN LYS GLU ARG GLU ALA LYS ASP TYR PRO ARG LEU SEQRES 18 B 223 LYS ARG HET GTP A 301 32 HET MG A 302 1 HET CA A 303 1 HET GTP B 301 32 HET MG B 302 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 CA CA 2+ FORMUL 8 HOH *42(H2 O) HELIX 1 AA1 GLY A 17 ALA A 26 1 10 HELIX 2 AA2 GLY A 104 ALA A 117 1 14 HELIX 3 AA3 ASN A 180 ALA A 199 1 20 HELIX 4 AA4 GLY B 17 ALA B 26 1 10 HELIX 5 AA5 GLY B 104 PHE B 116 1 13 HELIX 6 AA6 VAL B 152 ALA B 156 5 5 HELIX 7 AA7 PRO B 161 GLN B 165 5 5 HELIX 8 AA8 ASN B 180 LEU B 197 1 18 SHEET 1 AA1 6 LEU A 42 VAL A 47 0 SHEET 2 AA1 6 VAL A 69 VAL A 74 -1 O ASP A 73 N ARG A 43 SHEET 3 AA1 6 VAL A 6 LEU A 11 1 N VAL A 10 O VAL A 74 SHEET 4 AA1 6 GLY A 93 PHE A 98 1 O ILE A 95 N LEU A 9 SHEET 5 AA1 6 LEU A 139 HIS A 143 1 O LEU A 139 N TYR A 96 SHEET 6 AA1 6 ALA A 169 THR A 172 1 O THR A 172 N SER A 142 SHEET 1 AA2 6 LEU B 42 GLU B 46 0 SHEET 2 AA2 6 GLN B 70 VAL B 74 -1 O LEU B 71 N LEU B 45 SHEET 3 AA2 6 LYS B 7 LEU B 11 1 N ILE B 8 O TRP B 72 SHEET 4 AA2 6 ALA B 91 PHE B 98 1 O GLY B 93 N LYS B 7 SHEET 5 AA2 6 SER B 138 HIS B 143 1 O PHE B 141 N TYR B 96 SHEET 6 AA2 6 ARG B 168 THR B 172 1 O LEU B 170 N SER B 142 LINK OG SER A 19 MG MG A 302 1555 1555 1.95 LINK O SER A 178 CA CA A 303 1555 1555 2.54 LINK OG SER B 19 MG MG B 302 1555 1555 1.85 LINK O SER B 178 CA CA A 303 1555 1555 2.40 LINK O1G GTP A 301 MG MG A 302 1555 1555 2.21 LINK O1B GTP A 301 MG MG A 302 1555 1555 2.15 LINK MG MG A 302 O HOH A 402 1555 1555 1.78 LINK CA CA A 303 O HOH A 417 1555 1555 2.45 LINK CA CA A 303 O HOH A 415 1555 1555 2.59 LINK CA CA A 303 O HOH B 412 1555 1555 2.58 LINK O3G GTP B 301 MG MG B 302 1555 1555 2.05 LINK O2B GTP B 301 MG MG B 302 1555 1555 2.34 SITE 1 AC1 18 SER A 14 LYS A 15 SER A 16 GLY A 17 SITE 2 AC1 18 LYS A 18 SER A 19 THR A 20 THR A 39 SITE 3 AC1 18 GLY A 76 HIS A 143 SER A 145 SER A 173 SITE 4 AC1 18 LEU A 174 ASP A 175 TYR A 176 MG A 302 SITE 5 AC1 18 HOH A 402 HOH A 405 SITE 1 AC2 4 SER A 19 ASP A 73 GTP A 301 HOH A 402 SITE 1 AC3 5 SER A 178 HOH A 415 HOH A 417 SER B 178 SITE 2 AC3 5 HOH B 412 SITE 1 AC4 17 PRO B 13 SER B 14 LYS B 15 SER B 16 SITE 2 AC4 17 GLY B 17 LYS B 18 SER B 19 THR B 20 SITE 3 AC4 17 THR B 39 GLY B 75 HIS B 143 HIS B 144 SITE 4 AC4 17 SER B 145 LEU B 174 ASP B 175 MG B 302 SITE 5 AC4 17 HOH B 408 SITE 1 AC5 3 SER B 19 GTP B 301 HOH B 413 CRYST1 55.845 55.845 263.443 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017907 0.010338 0.000000 0.00000 SCALE2 0.000000 0.020677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003796 0.00000