HEADER TRANSFERASE 26-NOV-18 6IA8 TITLE APO CRYSTAL STRUCTURE OF ARCHAEAL METHANOCALDOCOCCUS INFERNUS ELP3 TITLE 2 (DEL1-19) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE, ELP3 FAMILY; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.48; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: APO STRUCTURE OF METHANOCALDOCOCCUS INFERNUS ELP3 COMPND 7 (DEL1-19) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS INFERNUS; SOURCE 3 ORGANISM_TAXID: 67760; SOURCE 4 GENE: METIN_0452; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TRNA BINDING, ELONGATOR COMPLEX, NON-CANONICAL ACETYLTRANSFERASE, KEYWDS 2 ACETYL-COA HYDROLYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.Y.LIN,S.GLATT REVDAT 2 24-JAN-24 6IA8 1 REMARK REVDAT 1 20-FEB-19 6IA8 0 JRNL AUTH T.Y.LIN,N.E.H.ABBASSI,K.ZAKRZEWSKI,A.CHRAMIEC-GLABIK, JRNL AUTH 2 M.JEMIOLA-RZEMINSKA,J.ROZYCKI,S.GLATT JRNL TITL THE ELONGATOR SUBUNIT ELP3 IS A NON-CANONICAL TRNA JRNL TITL 2 ACETYLTRANSFERASE. JRNL REF NAT COMMUN V. 10 625 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30733442 JRNL DOI 10.1038/S41467-019-08579-2 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 41022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8714 - 4.6773 1.00 2921 154 0.1901 0.2261 REMARK 3 2 4.6773 - 3.7131 1.00 2722 144 0.1379 0.1710 REMARK 3 3 3.7131 - 3.2439 1.00 2696 141 0.1706 0.1891 REMARK 3 4 3.2439 - 2.9474 1.00 2664 141 0.1910 0.2379 REMARK 3 5 2.9474 - 2.7362 1.00 2632 138 0.1921 0.2200 REMARK 3 6 2.7362 - 2.5749 1.00 2636 139 0.1886 0.2249 REMARK 3 7 2.5749 - 2.4459 1.00 2601 137 0.1827 0.2187 REMARK 3 8 2.4459 - 2.3394 1.00 2623 138 0.1791 0.2104 REMARK 3 9 2.3394 - 2.2494 1.00 2608 137 0.1817 0.2230 REMARK 3 10 2.2494 - 2.1718 1.00 2608 138 0.1812 0.2457 REMARK 3 11 2.1718 - 2.1039 1.00 2603 136 0.1839 0.2409 REMARK 3 12 2.1039 - 2.0437 1.00 2553 135 0.2014 0.2508 REMARK 3 13 2.0437 - 1.9899 0.99 2565 135 0.2211 0.2929 REMARK 3 14 1.9899 - 1.9414 0.92 2386 126 0.2702 0.2572 REMARK 3 15 1.9414 - 1.8972 0.83 2152 113 0.3671 0.4327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3585 REMARK 3 ANGLE : 0.840 4817 REMARK 3 CHIRALITY : 0.057 513 REMARK 3 PLANARITY : 0.006 605 REMARK 3 DIHEDRAL : 17.784 2201 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8848 -7.9288 -11.3838 REMARK 3 T TENSOR REMARK 3 T11: 0.3566 T22: 0.2740 REMARK 3 T33: 0.2683 T12: 0.0021 REMARK 3 T13: 0.0275 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 5.5535 L22: 2.7083 REMARK 3 L33: 2.5773 L12: 1.9289 REMARK 3 L13: 0.2942 L23: -0.0943 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: -0.2355 S13: 0.0226 REMARK 3 S21: 0.2462 S22: -0.1237 S23: 0.0992 REMARK 3 S31: 0.0579 S32: -0.1644 S33: 0.0468 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 368 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6404 16.0076 -9.3319 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.3240 REMARK 3 T33: 0.2437 T12: -0.0473 REMARK 3 T13: -0.0081 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.4918 L22: 2.2559 REMARK 3 L33: 3.4605 L12: -0.4794 REMARK 3 L13: -0.8418 L23: 1.7063 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.2216 S13: 0.0989 REMARK 3 S21: 0.2559 S22: -0.1625 S23: 0.1157 REMARK 3 S31: 0.0230 S32: -0.2261 S33: 0.1775 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 369 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2238 18.9100 -26.7206 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.2933 REMARK 3 T33: 0.2567 T12: 0.0350 REMARK 3 T13: 0.0049 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 2.4822 L22: 4.6020 REMARK 3 L33: 6.7691 L12: 2.1340 REMARK 3 L13: 3.6820 L23: 5.0843 REMARK 3 S TENSOR REMARK 3 S11: -0.1011 S12: -0.0871 S13: 0.1564 REMARK 3 S21: 0.0926 S22: 0.1222 S23: 0.0877 REMARK 3 S31: 0.1018 S32: 0.1161 S33: 0.0715 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 405 THROUGH 534 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8244 -0.8133 -32.4323 REMARK 3 T TENSOR REMARK 3 T11: 0.2225 T22: 0.2505 REMARK 3 T33: 0.2606 T12: -0.0094 REMARK 3 T13: 0.0187 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.0104 L22: 2.1141 REMARK 3 L33: 1.6231 L12: -0.4160 REMARK 3 L13: 0.1255 L23: -0.4923 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.1563 S13: -0.2857 REMARK 3 S21: -0.1693 S22: -0.0144 S23: 0.1147 REMARK 3 S31: 0.2149 S32: -0.1579 S33: -0.0115 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200013088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 24.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5L7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE/CITRATE (PH 3.8), 0.2 REMARK 280 M LISO4 AND 12% PEG1000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.11000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.72000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.55500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.72000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 187.66500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.72000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.55500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.72000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 187.66500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.11000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 MET A 19 REMARK 465 ALA A 20 REMARK 465 LYS A 21 REMARK 465 THR A 22 REMARK 465 LEU A 23 REMARK 465 ASP A 24 REMARK 465 LYS A 25 REMARK 465 LYS A 26 REMARK 465 ARG A 27 REMARK 465 ILE A 28 REMARK 465 GLU A 29 REMARK 465 GLN A 30 REMARK 465 ILE A 31 REMARK 465 LYS A 32 REMARK 465 SER A 33 REMARK 465 GLU A 34 REMARK 465 CYS A 35 REMARK 465 LEU A 36 REMARK 465 ARG A 37 REMARK 465 ILE A 38 REMARK 465 TYR A 39 REMARK 465 ARG A 40 REMARK 465 ILE A 41 REMARK 465 GLY A 42 REMARK 465 ILE A 43 REMARK 465 GLY A 44 REMARK 465 HIS A 45 REMARK 465 PRO A 46 REMARK 465 SER A 47 REMARK 465 ASN A 48 REMARK 465 SER A 49 REMARK 465 GLU A 50 REMARK 465 ILE A 51 REMARK 465 LEU A 52 REMARK 465 LYS A 53 REMARK 465 TYR A 54 REMARK 465 ALA A 55 REMARK 465 THR A 56 REMARK 465 GLU A 57 REMARK 465 GLU A 58 REMARK 465 GLU A 59 REMARK 465 LYS A 60 REMARK 465 LYS A 61 REMARK 465 ILE A 62 REMARK 465 LEU A 63 REMARK 465 ILE A 64 REMARK 465 PRO A 65 REMARK 465 ILE A 66 REMARK 465 LEU A 67 REMARK 465 ARG A 68 REMARK 465 LYS A 69 REMARK 465 LYS A 70 REMARK 465 PRO A 71 REMARK 465 VAL A 72 REMARK 465 ARG A 73 REMARK 465 ALA A 88 REMARK 465 LYS A 89 REMARK 465 CYS A 90 REMARK 465 PRO A 91 REMARK 465 HIS A 92 REMARK 465 GLY A 93 REMARK 465 LYS A 94 REMARK 465 CYS A 95 REMARK 465 ILE A 96 REMARK 465 PHE A 97 REMARK 465 CYS A 98 REMARK 465 PRO A 99 REMARK 465 GLY A 100 REMARK 465 GLY A 101 REMARK 465 LEU A 102 REMARK 465 ASP A 103 REMARK 465 SER A 104 REMARK 465 VAL A 105 REMARK 465 PHE A 106 REMARK 465 GLY A 107 REMARK 465 ASP A 108 REMARK 465 VAL A 109 REMARK 465 PRO A 110 REMARK 465 GLN A 111 REMARK 465 SER A 112 REMARK 465 TYR A 113 REMARK 465 THR A 114 REMARK 465 GLY A 115 REMARK 465 ARG A 116 REMARK 465 GLU A 117 REMARK 465 PRO A 118 REMARK 465 ALA A 119 REMARK 465 THR A 120 REMARK 465 MET A 121 REMARK 465 ARG A 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 125 CG SD CE REMARK 470 LYS A 143 CD CE NZ REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 192 CD CE NZ REMARK 470 LYS A 198 CE NZ REMARK 470 LYS A 216 CD CE NZ REMARK 470 LYS A 242 CD CE NZ REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 LYS A 319 CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 ARG A 350 NE CZ NH1 NH2 REMARK 470 ARG A 353 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 365 CE NZ REMARK 470 ARG A 383 NE CZ NH1 NH2 REMARK 470 LYS A 399 CD CE NZ REMARK 470 LYS A 455 CD CE NZ REMARK 470 GLU A 468 CD OE1 OE2 REMARK 470 ASP A 474 CG OD1 OD2 REMARK 470 LYS A 476 CB CG CD CE REMARK 470 GLU A 477 CB CG CD OE1 OE2 REMARK 470 LYS A 491 CD CE NZ REMARK 470 LYS A 524 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 137 O HOH A 702 1.35 REMARK 500 HE ARG A 385 O3 SO4 A 601 1.35 REMARK 500 OG SER A 349 O HOH A 701 1.85 REMARK 500 O HOH A 756 O HOH A 788 2.14 REMARK 500 NE ARG A 385 O3 SO4 A 601 2.15 REMARK 500 NH2 ARG A 137 O HOH A 702 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH21 ARG A 385 HB2 ASP A 474 6554 0.47 REMARK 500 HH22 ARG A 385 HB3 ASP A 474 6554 0.91 REMARK 500 NH2 ARG A 385 HB2 ASP A 474 6554 0.96 REMARK 500 NH2 ARG A 385 CB ASP A 474 6554 1.05 REMARK 500 HH21 ARG A 385 CB ASP A 474 6554 1.29 REMARK 500 HH22 ARG A 385 CB ASP A 474 6554 1.33 REMARK 500 NH2 ARG A 385 HB3 ASP A 474 6554 1.36 REMARK 500 CZ ARG A 385 CB ASP A 474 6554 1.81 REMARK 500 O HOH A 709 O HOH A 721 6554 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 213 CB CYS A 213 SG -0.101 REMARK 500 ARG A 473 CZ ARG A 473 NH2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 212 37.96 -99.40 REMARK 500 GLN A 234 -60.76 69.45 REMARK 500 PHE A 296 -96.60 -113.01 REMARK 500 TYR A 445 -69.93 -102.66 REMARK 500 GLU A 468 109.33 -169.80 REMARK 500 LYS A 476 -75.52 -64.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 473 11.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 DBREF 6IA8 A 21 534 UNP D5VRB9 D5VRB9_METIM 21 534 SEQADV 6IA8 GLY A 17 UNP D5VRB9 EXPRESSION TAG SEQADV 6IA8 ALA A 18 UNP D5VRB9 EXPRESSION TAG SEQADV 6IA8 MET A 19 UNP D5VRB9 EXPRESSION TAG SEQADV 6IA8 ALA A 20 UNP D5VRB9 EXPRESSION TAG SEQRES 1 A 518 GLY ALA MET ALA LYS THR LEU ASP LYS LYS ARG ILE GLU SEQRES 2 A 518 GLN ILE LYS SER GLU CYS LEU ARG ILE TYR ARG ILE GLY SEQRES 3 A 518 ILE GLY HIS PRO SER ASN SER GLU ILE LEU LYS TYR ALA SEQRES 4 A 518 THR GLU GLU GLU LYS LYS ILE LEU ILE PRO ILE LEU ARG SEQRES 5 A 518 LYS LYS PRO VAL ARG THR ILE SER GLY VAL ALA VAL VAL SEQRES 6 A 518 ALA VAL MET THR SER PRO ALA LYS CYS PRO HIS GLY LYS SEQRES 7 A 518 CYS ILE PHE CYS PRO GLY GLY LEU ASP SER VAL PHE GLY SEQRES 8 A 518 ASP VAL PRO GLN SER TYR THR GLY ARG GLU PRO ALA THR SEQRES 9 A 518 MET ARG GLY LEU MET PHE ASN PHE ASP PRO TYR LEU GLN SEQRES 10 A 518 THR ARG ALA ARG ILE GLU GLN LEU GLU LYS VAL GLY HIS SEQRES 11 A 518 PRO THR ASP LYS ILE GLU LEU ILE ILE MET GLY GLY THR SEQRES 12 A 518 PHE PRO ALA ARG GLU ILE GLU TYR GLN ASP TRP PHE ILE SEQRES 13 A 518 LYS ARG CYS LEU ASP ALA MET ASN GLU ARG GLU SER LYS SEQRES 14 A 518 SER LEU GLU GLU ALA GLN LYS ILE ASN GLU THR ALA LYS SEQRES 15 A 518 HIS ARG CYS VAL ALA LEU CYS ILE GLU THR ARG PRO ASP SEQRES 16 A 518 TYR CYS SER GLU LYS GLU ILE ASN GLN MET LEU LYS LEU SEQRES 17 A 518 GLY ALA THR ARG VAL GLU LEU GLY VAL GLN SER ILE TYR SEQRES 18 A 518 ASN GLU ILE LEU LYS LEU CYS LYS ARG GLY HIS SER VAL SEQRES 19 A 518 GLU ASP THR ILE LYS ALA THR GLN LEU LEU LYS ASP SER SEQRES 20 A 518 GLY LEU LYS VAL SER TYR HIS LEU MET PRO GLY MET PRO SEQRES 21 A 518 GLY SER SER ILE GLU MET ASP LYS LYS MET PHE LYS GLU SEQRES 22 A 518 ILE PHE THR ASN PRO ASP PHE MET PRO ASP MET VAL LYS SEQRES 23 A 518 ILE TYR PRO CYS LEU VAL ILE GLU GLY THR GLU LEU TYR SEQRES 24 A 518 GLU MET TRP LYS ARG GLY GLU PHE LYS PRO TYR ARG GLU SEQRES 25 A 518 GLU GLU ALA ILE GLU VAL ILE SER TYR ALA LYS SER ILE SEQRES 26 A 518 MET PRO LYS TRP VAL ARG THR SER ARG ILE GLN ARG ASP SEQRES 27 A 518 ILE PRO ALA THR VAL ILE VAL ASP GLY VAL LYS LYS SER SEQRES 28 A 518 ASN LEU GLY GLU LEU VAL TYR LYS TYR MET GLU LYS LYS SEQRES 29 A 518 GLY LEU ARG CYS ARG CYS ILE ARG CYS ARG GLU VAL GLY SEQRES 30 A 518 HIS VAL TYR TYR LYS LYS GLY ILE LEU PRO ASP PRO GLU SEQRES 31 A 518 HIS ILE LYS LEU VAL ARG GLU ASP TYR GLU ALA SER GLY SEQRES 32 A 518 GLY THR GLU ILE PHE LEU SER PHE GLU ASP VAL LYS ASN SEQRES 33 A 518 ASP ILE LEU ILE ALA PHE LEU ARG LEU ARG ASP PRO TYR SEQRES 34 A 518 LYS PRO PHE ARG LYS GLU ILE ASP ASP LYS THR MET LEU SEQRES 35 A 518 VAL ARG GLN LEU HIS VAL PHE GLY TRP GLU LYS ALA LEU SEQRES 36 A 518 THR ARG ASP ILE LYS GLU VAL SER TRP GLN HIS MET GLY SEQRES 37 A 518 TYR GLY ARG MET LEU MET LYS GLU ALA GLU ARG ILE ALA SEQRES 38 A 518 LYS GLU GLU PHE GLY LYS LYS LYS ILE LEU VAL THR SER SEQRES 39 A 518 GLY ILE GLY VAL ARG GLU TYR TYR ARG LYS LEU GLY TYR SEQRES 40 A 518 LYS ARG VAL GLY ALA TYR MET GLY LYS GLU LEU HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 HOH *120(H2 O) HELIX 1 AA1 GLY A 123 ASN A 127 5 5 HELIX 2 AA2 ASP A 129 VAL A 144 1 16 HELIX 3 AA3 THR A 159 ARG A 163 5 5 HELIX 4 AA4 GLU A 164 GLU A 181 1 18 HELIX 5 AA5 SER A 186 GLU A 195 1 10 HELIX 6 AA6 ARG A 209 CYS A 213 5 5 HELIX 7 AA7 SER A 214 GLY A 225 1 12 HELIX 8 AA8 TYR A 237 CYS A 244 1 8 HELIX 9 AA9 SER A 249 ASP A 262 1 14 HELIX 10 AB1 SER A 279 ASN A 293 1 15 HELIX 11 AB2 THR A 312 ARG A 320 1 9 HELIX 12 AB3 ARG A 327 MET A 342 1 16 HELIX 13 AB4 PRO A 356 THR A 358 5 3 HELIX 14 AB5 ASN A 368 GLY A 381 1 14 HELIX 15 AB6 CYS A 386 GLU A 391 1 6 HELIX 16 AB7 GLU A 391 GLY A 400 1 10 HELIX 17 AB8 ASP A 404 GLU A 406 5 3 HELIX 18 AB9 GLY A 484 GLU A 500 1 17 HELIX 19 AC1 GLY A 511 GLY A 513 5 3 HELIX 20 AC2 VAL A 514 LEU A 521 1 8 SHEET 1 AA1 2 ILE A 75 SER A 76 0 SHEET 2 AA1 2 GLU A 468 LYS A 469 -1 O LYS A 469 N ILE A 75 SHEET 1 AA2 7 ALA A 79 MET A 84 0 SHEET 2 AA2 7 LYS A 150 MET A 156 1 O GLU A 152 N VAL A 81 SHEET 3 AA2 7 ARG A 200 THR A 208 1 O ARG A 200 N ILE A 151 SHEET 4 AA2 7 ARG A 228 GLN A 234 1 O GLU A 230 N THR A 208 SHEET 5 AA2 7 LYS A 266 LEU A 271 1 O HIS A 270 N GLN A 234 SHEET 6 AA2 7 MET A 300 ILE A 303 1 O LYS A 302 N LEU A 271 SHEET 7 AA2 7 ARG A 347 THR A 348 1 O ARG A 347 N VAL A 301 SHEET 1 AA3 2 VAL A 308 ILE A 309 0 SHEET 2 AA3 2 ILE A 360 ASP A 362 -1 O ASP A 362 N VAL A 308 SHEET 1 AA4 7 ILE A 408 ALA A 417 0 SHEET 2 AA4 7 GLY A 420 ASP A 429 -1 O SER A 426 N VAL A 411 SHEET 3 AA4 7 ILE A 434 ASP A 443 -1 O LEU A 441 N ILE A 423 SHEET 4 AA4 7 THR A 456 VAL A 464 -1 O HIS A 463 N PHE A 438 SHEET 5 AA4 7 LYS A 505 VAL A 508 1 O LEU A 507 N VAL A 459 SHEET 6 AA4 7 TYR A 529 GLU A 533 -1 O MET A 530 N VAL A 508 SHEET 7 AA4 7 LYS A 524 VAL A 526 -1 N LYS A 524 O GLY A 531 SSBOND 1 CYS A 384 CYS A 389 1555 1555 2.05 SITE 1 AC1 8 PRO A 343 LYS A 344 ARG A 385 GLU A 413 SITE 2 AC1 8 THR A 472 ARG A 473 ASP A 474 HOH A 744 SITE 1 AC2 4 ARG A 209 ARG A 246 GLY A 247 HIS A 248 SITE 1 AC3 8 HIS A 482 MET A 483 GLY A 484 TYR A 485 SITE 2 AC3 8 GLY A 486 ARG A 487 TYR A 517 HOH A 703 SITE 1 AC4 5 SER A 76 VAL A 78 HIS A 463 PHE A 465 SITE 2 AC4 5 GLY A 466 SITE 1 AC5 4 TRP A 170 LYS A 173 ARG A 174 GLU A 183 SITE 1 AC6 3 ARG A 519 LYS A 524 ARG A 525 SITE 1 AC7 3 GLU A 142 GLU A 181 HIS A 199 CRYST1 63.440 63.440 250.220 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003996 0.00000