HEADER VIRAL PROTEIN 07-SEP-18 6ICX TITLE CRYSTAL STRUCTURE OF H7 HEMAGGLUTININ MUTANT AH-AGPL (V186G) FROM THE TITLE 2 INFLUENZA VIRUS A/ANHUI/1/2013 (H7N9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 9 ORGANISM_TAXID: 11320; SOURCE 10 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS INFLUENZA VIRUS, H7N9, HEMAGGLUTININ, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.F.GAO,Y.XU,J.X.QI REVDAT 5 09-OCT-24 6ICX 1 REMARK REVDAT 4 22-NOV-23 6ICX 1 HETSYN REVDAT 3 29-JUL-20 6ICX 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 04-DEC-19 6ICX 1 JRNL REVDAT 1 27-NOV-19 6ICX 0 JRNL AUTH Y.XU,R.PENG,W.ZHANG,J.QI,H.SONG,S.LIU,H.WANG,M.WANG,H.XIAO, JRNL AUTH 2 L.FU,Z.FAN,Y.BI,J.YAN,Y.SHI,G.F.GAO JRNL TITL AVIAN-TO-HUMAN RECEPTOR-BINDING ADAPTATION OF AVIAN H7N9 JRNL TITL 2 INFLUENZA VIRUS HEMAGGLUTININ. JRNL REF CELL REP V. 29 2217 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31747596 JRNL DOI 10.1016/J.CELREP.2019.10.047 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0980 - 5.1618 0.96 2826 171 0.2527 0.2622 REMARK 3 2 5.1618 - 4.0998 0.97 2810 131 0.2244 0.2609 REMARK 3 3 4.0998 - 3.5823 0.99 2808 139 0.2386 0.3041 REMARK 3 4 3.5823 - 3.2551 1.00 2847 142 0.2732 0.3344 REMARK 3 5 3.2551 - 3.0220 1.00 2800 146 0.3001 0.2951 REMARK 3 6 3.0220 - 2.8439 1.00 2805 159 0.3140 0.3627 REMARK 3 7 2.8439 - 2.7016 1.00 2796 155 0.3284 0.3598 REMARK 3 8 2.7016 - 2.5840 1.00 2803 137 0.3416 0.3795 REMARK 3 9 2.5840 - 2.4846 1.00 2806 143 0.3455 0.4204 REMARK 3 10 2.4846 - 2.3990 0.99 2756 135 0.3418 0.3790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3832 REMARK 3 ANGLE : 0.511 5185 REMARK 3 CHIRALITY : 0.041 564 REMARK 3 PLANARITY : 0.003 686 REMARK 3 DIHEDRAL : 17.850 1428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -53.0135 17.7424 7.5925 REMARK 3 T TENSOR REMARK 3 T11: 0.3008 T22: 0.2311 REMARK 3 T33: 0.4749 T12: 0.0365 REMARK 3 T13: 0.0181 T23: 0.0902 REMARK 3 L TENSOR REMARK 3 L11: 1.4946 L22: 1.7574 REMARK 3 L33: 0.5573 L12: 0.4288 REMARK 3 L13: -0.2007 L23: 0.7022 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: -0.0306 S13: -0.1465 REMARK 3 S21: 0.0091 S22: 0.2660 S23: -0.2185 REMARK 3 S31: -0.0155 S32: 0.0926 S33: -0.1914 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ICX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300008934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91847 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.399 REMARK 200 RESOLUTION RANGE LOW (A) : 36.555 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63300 REMARK 200 R SYM FOR SHELL (I) : 0.63300 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KOL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.0, 12% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 57.65900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.28944 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 97.77267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 57.65900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.28944 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 97.77267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 57.65900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.28944 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 97.77267 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 57.65900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.28944 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 97.77267 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 57.65900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.28944 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 97.77267 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 57.65900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.28944 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 97.77267 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.57888 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 195.54533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 66.57888 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 195.54533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 66.57888 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 195.54533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 66.57888 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 195.54533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 66.57888 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 195.54533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 66.57888 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 195.54533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -57.65900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 99.86832 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -115.31800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 317 REMARK 465 PRO A 318 REMARK 465 LYS A 319 REMARK 465 GLY A 320 REMARK 465 ARG A 321 REMARK 465 GLY B 322 REMARK 465 LEU B 323 REMARK 465 PHE B 324 REMARK 465 GLY B 325 REMARK 465 ALA B 326 REMARK 465 ILE B 327 REMARK 465 ARG B 491 REMARK 465 ILE B 492 REMARK 465 GLN B 493 REMARK 465 ILE B 494 REMARK 465 ASP B 495 REMARK 465 PRO B 496 REMARK 465 VAL B 497 REMARK 465 LYS B 498 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 235 O HOH A 701 2.02 REMARK 500 O GLY A 196 O HOH A 701 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 44 O GLN A 68 5555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 43.39 -80.49 REMARK 500 ASN A 123 50.66 -116.53 REMARK 500 ARG A 131 -111.00 -123.75 REMARK 500 SER A 135 -151.09 -128.55 REMARK 500 THR A 147 -132.26 -127.79 REMARK 500 ASP A 148 94.91 -59.97 REMARK 500 ASN A 149 -114.40 57.06 REMARK 500 ALA A 150 173.31 67.28 REMARK 500 SER A 197 -140.16 -151.40 REMARK 500 GLN A 201 80.13 -174.39 REMARK 500 PRO A 206 -179.09 -69.16 REMARK 500 SER A 207 83.17 -166.54 REMARK 500 ASN A 231 -7.87 66.98 REMARK 500 GLN B 348 84.66 -158.45 REMARK 500 ASN B 349 -159.68 -102.27 REMARK 500 ARG B 448 -70.33 -68.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE REFERENCE R4NN21_9INFA WAS USED ACCORDING TO AUTHOR'S REMARK 999 SUGGESTION. AUTHOR STATED HEMAGGLUTININ USED IN THIS STUDAY, WHICH REMARK 999 WAS DERIVED FROM AH1-H7N9 VIRUS, WAS IDENTICAL WITH R4NN21_9INFA. DBREF 6ICX A 1 321 UNP R4NN21 R4NN21_9INFA 19 339 DBREF 6ICX B 322 498 UNP R4NN21 R4NN21_9INFA 340 516 SEQADV 6ICX GLY A 177 UNP R4NN21 VAL 195 ENGINEERED MUTATION SEQRES 1 A 321 ASP LYS ILE CYS LEU GLY HIS HIS ALA VAL SER ASN GLY SEQRES 2 A 321 THR LYS VAL ASN THR LEU THR GLU ARG GLY VAL GLU VAL SEQRES 3 A 321 VAL ASN ALA THR GLU THR VAL GLU ARG THR ASN ILE PRO SEQRES 4 A 321 ARG ILE CYS SER LYS GLY LYS ARG THR VAL ASP LEU GLY SEQRES 5 A 321 GLN CYS GLY LEU LEU GLY THR ILE THR GLY PRO PRO GLN SEQRES 6 A 321 CYS ASP GLN PHE LEU GLU PHE SER ALA ASP LEU ILE ILE SEQRES 7 A 321 GLU ARG ARG GLU GLY SER ASP VAL CYS TYR PRO GLY LYS SEQRES 8 A 321 PHE VAL ASN GLU GLU ALA LEU ARG GLN ILE LEU ARG GLU SEQRES 9 A 321 SER GLY GLY ILE ASP LYS GLU ALA MET GLY PHE THR TYR SEQRES 10 A 321 SER GLY ILE ARG THR ASN GLY ALA THR SER ALA CYS ARG SEQRES 11 A 321 ARG SER GLY SER SER PHE TYR ALA GLU MET LYS TRP LEU SEQRES 12 A 321 LEU SER ASN THR ASP ASN ALA ALA PHE PRO GLN MET THR SEQRES 13 A 321 LYS SER TYR LYS ASN THR ARG LYS SER PRO ALA LEU ILE SEQRES 14 A 321 VAL TRP GLY ILE HIS HIS SER GLY SER THR ALA GLU GLN SEQRES 15 A 321 THR LYS LEU TYR GLY SER GLY ASN LYS LEU VAL THR VAL SEQRES 16 A 321 GLY SER SER ASN TYR GLN GLN SER PHE VAL PRO SER PRO SEQRES 17 A 321 GLY ALA ARG PRO GLN VAL ASN GLY LEU SER GLY ARG ILE SEQRES 18 A 321 ASP PHE HIS TRP LEU MET LEU ASN PRO ASN ASP THR VAL SEQRES 19 A 321 THR PHE SER PHE ASN GLY ALA PHE ILE ALA PRO ASP ARG SEQRES 20 A 321 ALA SER PHE LEU ARG GLY LYS SER MET GLY ILE GLN SER SEQRES 21 A 321 GLY VAL GLN VAL ASP ALA ASN CYS GLU GLY ASP CYS TYR SEQRES 22 A 321 HIS SER GLY GLY THR ILE ILE SER ASN LEU PRO PHE GLN SEQRES 23 A 321 ASN ILE ASP SER ARG ALA VAL GLY LYS CYS PRO ARG TYR SEQRES 24 A 321 VAL LYS GLN ARG SER LEU LEU LEU ALA THR GLY MET LYS SEQRES 25 A 321 ASN VAL PRO GLU ILE PRO LYS GLY ARG SEQRES 1 B 177 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY SEQRES 2 B 177 TRP GLU GLY LEU ILE ASP GLY TRP TYR GLY PHE ARG HIS SEQRES 3 B 177 GLN ASN ALA GLN GLY GLU GLY THR ALA ALA ASP TYR LYS SEQRES 4 B 177 SER THR GLN SER ALA ILE ASP GLN ILE THR GLY LYS LEU SEQRES 5 B 177 ASN ARG LEU ILE GLU LYS THR ASN GLN GLN PHE GLU LEU SEQRES 6 B 177 ILE ASP ASN GLU PHE ASN GLU VAL GLU LYS GLN ILE GLY SEQRES 7 B 177 ASN VAL ILE ASN TRP THR ARG ASP SER ILE THR GLU VAL SEQRES 8 B 177 TRP SER TYR ASN ALA GLU LEU LEU VAL ALA MET GLU ASN SEQRES 9 B 177 GLN HIS THR ILE ASP LEU ALA ASP SER GLU MET ASP LYS SEQRES 10 B 177 LEU TYR GLU ARG VAL LYS ARG GLN LEU ARG GLU ASN ALA SEQRES 11 B 177 GLU GLU ASP GLY THR GLY CYS PHE GLU ILE PHE HIS LYS SEQRES 12 B 177 CYS ASP ASP ASP CYS MET ALA SER ILE ARG ASN ASN THR SEQRES 13 B 177 TYR ASP HIS SER LYS TYR ARG GLU GLU ALA MET GLN ASN SEQRES 14 B 177 ARG ILE GLN ILE ASP PRO VAL LYS HET NAG A 601 14 HET NAG A 602 14 HET NAG B 501 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 HOH *75(H2 O) HELIX 1 AA1 LEU A 57 GLY A 62 1 6 HELIX 2 AA2 PRO A 63 LEU A 70 5 8 HELIX 3 AA3 ASN A 94 GLU A 104 1 11 HELIX 4 AA4 SER A 178 GLY A 187 1 10 HELIX 5 AA5 ASP B 358 ILE B 377 1 20 HELIX 6 AA6 GLU B 395 LEU B 447 1 53 HELIX 7 AA7 ASP B 466 ASN B 475 1 10 HELIX 8 AA8 TYR B 483 ASN B 490 1 8 SHEET 1 AA1 3 CYS A 4 HIS A 7 0 SHEET 2 AA1 3 TYR B 343 GLN B 348 -1 O ARG B 346 N CYS A 4 SHEET 3 AA1 3 GLU B 353 ALA B 357 -1 O ALA B 356 N PHE B 345 SHEET 1 AA2 2 THR A 14 ASN A 17 0 SHEET 2 AA2 2 ARG A 22 VAL A 26 -1 O VAL A 24 N VAL A 16 SHEET 1 AA3 2 ALA A 29 GLU A 31 0 SHEET 2 AA3 2 LEU A 306 ALA A 308 -1 O LEU A 307 N THR A 30 SHEET 1 AA4 3 VAL A 33 GLU A 34 0 SHEET 2 AA4 3 PHE A 285 GLN A 286 1 O PHE A 285 N GLU A 34 SHEET 3 AA4 3 ARG A 298 TYR A 299 1 O ARG A 298 N GLN A 286 SHEET 1 AA5 2 ILE A 41 CYS A 42 0 SHEET 2 AA5 2 VAL A 264 ASP A 265 1 O ASP A 265 N ILE A 41 SHEET 1 AA6 3 THR A 48 ASP A 50 0 SHEET 2 AA6 3 LEU A 76 GLU A 79 1 O ILE A 78 N VAL A 49 SHEET 3 AA6 3 MET A 256 GLN A 259 1 O MET A 256 N ILE A 77 SHEET 1 AA7 5 GLY A 90 PHE A 92 0 SHEET 2 AA7 5 ARG A 220 LEU A 228 1 O PHE A 223 N LYS A 91 SHEET 3 AA7 5 ALA A 167 HIS A 175 -1 N HIS A 175 O ARG A 220 SHEET 4 AA7 5 ARG A 247 LEU A 251 -1 O SER A 249 N LEU A 168 SHEET 5 AA7 5 ILE A 108 ALA A 112 -1 N GLU A 111 O ALA A 248 SHEET 1 AA8 5 GLY A 90 PHE A 92 0 SHEET 2 AA8 5 ARG A 220 LEU A 228 1 O PHE A 223 N LYS A 91 SHEET 3 AA8 5 ALA A 167 HIS A 175 -1 N HIS A 175 O ARG A 220 SHEET 4 AA8 5 PHE A 242 PRO A 245 -1 O ILE A 243 N GLY A 172 SHEET 5 AA8 5 MET A 140 TRP A 142 -1 N LYS A 141 O ALA A 244 SHEET 1 AA9 2 THR A 126 ARG A 130 0 SHEET 2 AA9 2 SER A 134 SER A 135 -1 O SER A 135 N CYS A 129 SHEET 1 AB1 3 MET A 155 LYS A 160 0 SHEET 2 AB1 3 THR A 233 PHE A 238 -1 O PHE A 238 N MET A 155 SHEET 3 AB1 3 THR A 194 GLY A 196 -1 N THR A 194 O SER A 237 SHEET 1 AB2 3 GLY A 277 THR A 278 0 SHEET 2 AB2 3 CYS A 272 HIS A 274 -1 N HIS A 274 O GLY A 277 SHEET 3 AB2 3 VAL A 293 GLY A 294 -1 O VAL A 293 N TYR A 273 SHEET 1 AB3 2 ALA B 451 GLU B 453 0 SHEET 2 AB3 2 PHE B 459 ILE B 461 -1 O GLU B 460 N GLU B 452 SSBOND 1 CYS A 4 CYS B 458 1555 1555 2.03 SSBOND 2 CYS A 42 CYS A 268 1555 1555 2.03 SSBOND 3 CYS A 54 CYS A 66 1555 1555 2.03 SSBOND 4 CYS A 87 CYS A 129 1555 1555 2.03 SSBOND 5 CYS A 272 CYS A 296 1555 1555 2.03 SSBOND 6 CYS B 465 CYS B 469 1555 1555 2.03 LINK ND2 ASN A 28 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 231 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN B 403 C1 NAG B 501 1555 1555 1.44 CRYST1 115.318 115.318 293.318 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008672 0.005007 0.000000 0.00000 SCALE2 0.000000 0.010013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003409 0.00000