HEADER VIRAL PROTEIN 09-SEP-18 6ID8 TITLE CRYSTAL STRUCTURE OF H7 HEMAGGLUTININ MUTANT H7-SVTL ( A138S, P221T) TITLE 2 FROM THE INFLUENZA VIRUS A/ANHUI/1/2013 (H7N9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 GENE: HA; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 10 ORGANISM_TAXID: 11320; SOURCE 11 GENE: HA; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS INFLUENZA VIRUS, H7N9, HEMAGGLUTININ, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.F.GAO,Y.XU,J.X.QI REVDAT 5 06-NOV-24 6ID8 1 REMARK REVDAT 4 22-NOV-23 6ID8 1 HETSYN REVDAT 3 29-JUL-20 6ID8 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 04-DEC-19 6ID8 1 JRNL REVDAT 1 27-NOV-19 6ID8 0 JRNL AUTH Y.XU,R.PENG,W.ZHANG,J.QI,H.SONG,S.LIU,H.WANG,M.WANG,H.XIAO, JRNL AUTH 2 L.FU,Z.FAN,Y.BI,J.YAN,Y.SHI,G.F.GAO JRNL TITL AVIAN-TO-HUMAN RECEPTOR-BINDING ADAPTATION OF AVIAN H7N9 JRNL TITL 2 INFLUENZA VIRUS HEMAGGLUTININ. JRNL REF CELL REP V. 29 2217 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31747596 JRNL DOI 10.1016/J.CELREP.2019.10.047 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 16807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.650 REMARK 3 FREE R VALUE TEST SET COUNT : 781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4373 - 5.2693 0.95 2786 116 0.2332 0.2344 REMARK 3 2 5.2693 - 4.1841 0.97 2707 132 0.2171 0.2264 REMARK 3 3 4.1841 - 3.6556 0.95 2662 127 0.2382 0.3120 REMARK 3 4 3.6556 - 3.3216 0.95 2636 136 0.2639 0.3586 REMARK 3 5 3.3216 - 3.0836 0.95 2638 120 0.2930 0.3107 REMARK 3 6 3.0836 - 2.9019 0.95 2597 150 0.3166 0.3455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3835 REMARK 3 ANGLE : 0.570 5189 REMARK 3 CHIRALITY : 0.043 567 REMARK 3 PLANARITY : 0.003 685 REMARK 3 DIHEDRAL : 14.536 1428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.6474 12.5810 -5.3495 REMARK 3 T TENSOR REMARK 3 T11: 0.5449 T22: 0.4533 REMARK 3 T33: 0.5806 T12: 0.0625 REMARK 3 T13: 0.0437 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.5695 L22: 2.0938 REMARK 3 L33: 1.7705 L12: -0.0308 REMARK 3 L13: -0.0244 L23: 0.7425 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: -0.0126 S13: -0.1227 REMARK 3 S21: -0.4832 S22: -0.1633 S23: -0.1910 REMARK 3 S31: 0.2663 S32: 0.0293 S33: 0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.0471 18.5300 -31.2717 REMARK 3 T TENSOR REMARK 3 T11: 1.4978 T22: 0.6275 REMARK 3 T33: 0.9066 T12: 0.3077 REMARK 3 T13: -0.1610 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.2795 L22: 1.4253 REMARK 3 L33: 2.6666 L12: 1.2636 REMARK 3 L13: -0.1094 L23: -0.4790 REMARK 3 S TENSOR REMARK 3 S11: 0.1765 S12: 0.3415 S13: 0.1909 REMARK 3 S21: -1.7205 S22: -0.2742 S23: 0.5970 REMARK 3 S31: -0.4224 S32: -0.1944 S33: 0.0208 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.2419 8.8274 -1.7435 REMARK 3 T TENSOR REMARK 3 T11: 0.4202 T22: 0.4535 REMARK 3 T33: 0.5997 T12: 0.0018 REMARK 3 T13: -0.0064 T23: -0.0729 REMARK 3 L TENSOR REMARK 3 L11: 0.7060 L22: 0.9233 REMARK 3 L33: 0.1458 L12: 0.3348 REMARK 3 L13: 0.2710 L23: 0.1352 REMARK 3 S TENSOR REMARK 3 S11: 0.2923 S12: -0.1760 S13: -0.2093 REMARK 3 S21: -0.2462 S22: -0.5707 S23: 0.0172 REMARK 3 S31: 0.2070 S32: -0.2930 S33: 0.0010 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.9167 21.2375 18.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.5391 T22: 0.5512 REMARK 3 T33: 0.6135 T12: -0.0141 REMARK 3 T13: 0.0481 T23: 0.0628 REMARK 3 L TENSOR REMARK 3 L11: 0.5680 L22: 0.3688 REMARK 3 L33: 0.5003 L12: 0.0634 REMARK 3 L13: 0.3591 L23: -0.2793 REMARK 3 S TENSOR REMARK 3 S11: -0.3150 S12: -0.1551 S13: 0.0125 REMARK 3 S21: 0.0343 S22: 0.2401 S23: 0.1548 REMARK 3 S31: -0.0156 S32: 0.3601 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 328 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.4607 24.5273 49.6532 REMARK 3 T TENSOR REMARK 3 T11: 1.5754 T22: 0.8562 REMARK 3 T33: 0.8601 T12: -0.1437 REMARK 3 T13: -0.1825 T23: 0.2330 REMARK 3 L TENSOR REMARK 3 L11: 6.6858 L22: 0.1443 REMARK 3 L33: 0.0111 L12: 0.9815 REMARK 3 L13: -0.2774 L23: -0.0402 REMARK 3 S TENSOR REMARK 3 S11: 0.9152 S12: 0.2453 S13: 1.3758 REMARK 3 S21: 0.8542 S22: -0.9947 S23: -0.4686 REMARK 3 S31: -0.2896 S32: 1.1060 S33: 0.3594 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 338 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.1960 14.0741 54.5995 REMARK 3 T TENSOR REMARK 3 T11: 1.6330 T22: 1.6546 REMARK 3 T33: 0.7874 T12: 0.0889 REMARK 3 T13: -0.3528 T23: 0.3631 REMARK 3 L TENSOR REMARK 3 L11: 0.0075 L22: 0.5942 REMARK 3 L33: 0.0523 L12: 0.0736 REMARK 3 L13: -0.0213 L23: -0.1783 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: -1.0467 S13: -0.4213 REMARK 3 S21: -0.2958 S22: -0.6622 S23: -1.0226 REMARK 3 S31: 0.1352 S32: -0.8933 S33: -0.0230 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 360 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.4809 17.6763 35.8309 REMARK 3 T TENSOR REMARK 3 T11: 1.2286 T22: 0.9500 REMARK 3 T33: 0.7492 T12: 0.0624 REMARK 3 T13: -0.0324 T23: 0.1653 REMARK 3 L TENSOR REMARK 3 L11: 0.1465 L22: 0.0181 REMARK 3 L33: 0.0089 L12: -0.0531 REMARK 3 L13: -0.0352 L23: 0.0125 REMARK 3 S TENSOR REMARK 3 S11: 0.3663 S12: -0.2160 S13: 0.4377 REMARK 3 S21: -0.3809 S22: -0.1684 S23: 0.4732 REMARK 3 S31: 0.4817 S32: -0.3556 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 377 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.7872 18.0698 9.4872 REMARK 3 T TENSOR REMARK 3 T11: 0.5901 T22: 0.9048 REMARK 3 T33: 0.9037 T12: 0.0181 REMARK 3 T13: 0.0485 T23: 0.1344 REMARK 3 L TENSOR REMARK 3 L11: 0.0324 L22: 0.0732 REMARK 3 L33: 0.0001 L12: 0.0499 REMARK 3 L13: -0.0032 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.0947 S12: 0.5175 S13: -0.6673 REMARK 3 S21: -0.3707 S22: 0.3261 S23: -0.2162 REMARK 3 S31: -0.3232 S32: -0.9137 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 387 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.1548 23.9648 -8.3420 REMARK 3 T TENSOR REMARK 3 T11: 0.8877 T22: 0.6063 REMARK 3 T33: 0.8425 T12: 0.0662 REMARK 3 T13: 0.1206 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 0.2721 L22: 0.1730 REMARK 3 L33: 0.0406 L12: 0.1643 REMARK 3 L13: -0.0380 L23: 0.0300 REMARK 3 S TENSOR REMARK 3 S11: 0.1686 S12: 1.1559 S13: 0.8919 REMARK 3 S21: -1.3956 S22: -0.4126 S23: -0.0898 REMARK 3 S31: -0.3785 S32: -0.2892 S33: -0.0013 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 396 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.7452 29.4723 26.3542 REMARK 3 T TENSOR REMARK 3 T11: 0.5612 T22: 0.4429 REMARK 3 T33: 0.5558 T12: 0.0369 REMARK 3 T13: -0.1001 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.3021 L22: 0.6641 REMARK 3 L33: 1.5368 L12: 0.0157 REMARK 3 L13: 1.3636 L23: -0.1871 REMARK 3 S TENSOR REMARK 3 S11: 0.1942 S12: -0.2915 S13: 0.1363 REMARK 3 S21: 0.2172 S22: -0.0272 S23: -0.1443 REMARK 3 S31: -0.3335 S32: 0.3614 S33: 0.1080 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 447 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.6550 19.8986 65.6290 REMARK 3 T TENSOR REMARK 3 T11: 1.6899 T22: 1.6933 REMARK 3 T33: 0.5380 T12: 0.2557 REMARK 3 T13: -0.1151 T23: 0.2635 REMARK 3 L TENSOR REMARK 3 L11: 0.6260 L22: 3.5258 REMARK 3 L33: 1.2473 L12: 0.8351 REMARK 3 L13: -0.4063 L23: -2.0862 REMARK 3 S TENSOR REMARK 3 S11: 0.4271 S12: -0.7442 S13: -0.0563 REMARK 3 S21: 1.8060 S22: 0.2278 S23: 0.4145 REMARK 3 S31: -0.2291 S32: -0.6087 S33: 0.4482 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 484 THROUGH 490 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.2173 24.9371 76.4611 REMARK 3 T TENSOR REMARK 3 T11: 2.2032 T22: 1.7954 REMARK 3 T33: 0.6579 T12: 0.4508 REMARK 3 T13: 0.2050 T23: 0.1785 REMARK 3 L TENSOR REMARK 3 L11: 3.2671 L22: 3.6778 REMARK 3 L33: 0.6827 L12: 2.7460 REMARK 3 L13: 1.3814 L23: 1.5284 REMARK 3 S TENSOR REMARK 3 S11: -1.4112 S12: 0.5248 S13: -0.1552 REMARK 3 S21: -1.4471 S22: 1.0751 S23: -0.0397 REMARK 3 S31: 0.7603 S32: -0.4045 S33: -0.4550 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ID8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300009016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97892 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KOL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 HEPES PH 7.5, 5% V/V PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 58.62150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.84514 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 98.04300 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 58.62150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.84514 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 98.04300 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 58.62150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.84514 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 98.04300 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 58.62150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.84514 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 98.04300 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 58.62150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.84514 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 98.04300 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 58.62150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.84514 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 98.04300 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.69028 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 196.08600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 67.69028 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 196.08600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 67.69028 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 196.08600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 67.69028 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 196.08600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 67.69028 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 196.08600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 67.69028 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 196.08600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -58.62150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 101.53542 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -117.24300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 317 REMARK 465 PRO A 318 REMARK 465 LYS A 319 REMARK 465 GLY A 320 REMARK 465 ARG A 321 REMARK 465 GLY B 322 REMARK 465 LEU B 323 REMARK 465 PHE B 324 REMARK 465 GLY B 325 REMARK 465 ALA B 326 REMARK 465 ILE B 327 REMARK 465 ARG B 491 REMARK 465 ILE B 492 REMARK 465 GLN B 493 REMARK 465 ILE B 494 REMARK 465 ASP B 495 REMARK 465 PRO B 496 REMARK 465 VAL B 497 REMARK 465 LYS B 498 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 146 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 41.90 -77.84 REMARK 500 ASN A 123 48.47 -153.75 REMARK 500 CYS A 129 87.79 -67.50 REMARK 500 ARG A 131 -104.19 -129.68 REMARK 500 SER A 135 -162.94 -122.31 REMARK 500 ASN A 149 -134.32 72.77 REMARK 500 ALA A 150 -146.79 72.37 REMARK 500 TYR A 200 -124.64 -106.37 REMARK 500 GLN A 201 147.44 80.72 REMARK 500 GLN A 202 -157.98 -169.07 REMARK 500 SER A 203 -75.49 -119.09 REMARK 500 PHE A 204 72.55 72.55 REMARK 500 ARG A 211 -155.23 -86.85 REMARK 500 THR A 212 -155.59 -86.32 REMARK 500 VAL A 214 -71.44 -123.43 REMARK 500 ASN A 239 22.00 -154.01 REMARK 500 SER A 255 -167.75 -160.36 REMARK 500 ASN B 349 -104.24 -101.60 REMARK 500 ASP B 388 -162.93 -101.89 REMARK 500 ASP B 454 -52.89 -121.41 REMARK 500 THR B 456 58.82 -119.43 REMARK 500 SER B 481 -25.04 -149.89 REMARK 500 ARG B 484 -75.65 -70.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE REFERENCE R4NN21_9INFA WAS USED ACCORDING TO AUTHOR'S REMARK 999 SUGGESTION. AUTHOR STATED HEMAGGLUTININ USED IN THIS STUDAY, WHICH REMARK 999 WAS DERIVED FROM AH1-H7N9 VIRUS, WAS IDENTICAL WITH R4NN21_9INFA. DBREF 6ID8 A 1 321 UNP R4NN21 R4NN21_9INFA 19 339 DBREF 6ID8 B 322 498 UNP R4NN21 R4NN21_9INFA 340 516 SEQADV 6ID8 SER A 128 UNP R4NN21 ALA 146 ENGINEERED MUTATION SEQADV 6ID8 THR A 212 UNP R4NN21 PRO 230 ENGINEERED MUTATION SEQRES 1 A 321 ASP LYS ILE CYS LEU GLY HIS HIS ALA VAL SER ASN GLY SEQRES 2 A 321 THR LYS VAL ASN THR LEU THR GLU ARG GLY VAL GLU VAL SEQRES 3 A 321 VAL ASN ALA THR GLU THR VAL GLU ARG THR ASN ILE PRO SEQRES 4 A 321 ARG ILE CYS SER LYS GLY LYS ARG THR VAL ASP LEU GLY SEQRES 5 A 321 GLN CYS GLY LEU LEU GLY THR ILE THR GLY PRO PRO GLN SEQRES 6 A 321 CYS ASP GLN PHE LEU GLU PHE SER ALA ASP LEU ILE ILE SEQRES 7 A 321 GLU ARG ARG GLU GLY SER ASP VAL CYS TYR PRO GLY LYS SEQRES 8 A 321 PHE VAL ASN GLU GLU ALA LEU ARG GLN ILE LEU ARG GLU SEQRES 9 A 321 SER GLY GLY ILE ASP LYS GLU ALA MET GLY PHE THR TYR SEQRES 10 A 321 SER GLY ILE ARG THR ASN GLY ALA THR SER SER CYS ARG SEQRES 11 A 321 ARG SER GLY SER SER PHE TYR ALA GLU MET LYS TRP LEU SEQRES 12 A 321 LEU SER ASN THR ASP ASN ALA ALA PHE PRO GLN MET THR SEQRES 13 A 321 LYS SER TYR LYS ASN THR ARG LYS SER PRO ALA LEU ILE SEQRES 14 A 321 VAL TRP GLY ILE HIS HIS SER VAL SER THR ALA GLU GLN SEQRES 15 A 321 THR LYS LEU TYR GLY SER GLY ASN LYS LEU VAL THR VAL SEQRES 16 A 321 GLY SER SER ASN TYR GLN GLN SER PHE VAL PRO SER PRO SEQRES 17 A 321 GLY ALA ARG THR GLN VAL ASN GLY LEU SER GLY ARG ILE SEQRES 18 A 321 ASP PHE HIS TRP LEU MET LEU ASN PRO ASN ASP THR VAL SEQRES 19 A 321 THR PHE SER PHE ASN GLY ALA PHE ILE ALA PRO ASP ARG SEQRES 20 A 321 ALA SER PHE LEU ARG GLY LYS SER MET GLY ILE GLN SER SEQRES 21 A 321 GLY VAL GLN VAL ASP ALA ASN CYS GLU GLY ASP CYS TYR SEQRES 22 A 321 HIS SER GLY GLY THR ILE ILE SER ASN LEU PRO PHE GLN SEQRES 23 A 321 ASN ILE ASP SER ARG ALA VAL GLY LYS CYS PRO ARG TYR SEQRES 24 A 321 VAL LYS GLN ARG SER LEU LEU LEU ALA THR GLY MET LYS SEQRES 25 A 321 ASN VAL PRO GLU ILE PRO LYS GLY ARG SEQRES 1 B 177 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY SEQRES 2 B 177 TRP GLU GLY LEU ILE ASP GLY TRP TYR GLY PHE ARG HIS SEQRES 3 B 177 GLN ASN ALA GLN GLY GLU GLY THR ALA ALA ASP TYR LYS SEQRES 4 B 177 SER THR GLN SER ALA ILE ASP GLN ILE THR GLY LYS LEU SEQRES 5 B 177 ASN ARG LEU ILE GLU LYS THR ASN GLN GLN PHE GLU LEU SEQRES 6 B 177 ILE ASP ASN GLU PHE ASN GLU VAL GLU LYS GLN ILE GLY SEQRES 7 B 177 ASN VAL ILE ASN TRP THR ARG ASP SER ILE THR GLU VAL SEQRES 8 B 177 TRP SER TYR ASN ALA GLU LEU LEU VAL ALA MET GLU ASN SEQRES 9 B 177 GLN HIS THR ILE ASP LEU ALA ASP SER GLU MET ASP LYS SEQRES 10 B 177 LEU TYR GLU ARG VAL LYS ARG GLN LEU ARG GLU ASN ALA SEQRES 11 B 177 GLU GLU ASP GLY THR GLY CYS PHE GLU ILE PHE HIS LYS SEQRES 12 B 177 CYS ASP ASP ASP CYS MET ALA SER ILE ARG ASN ASN THR SEQRES 13 B 177 TYR ASP HIS SER LYS TYR ARG GLU GLU ALA MET GLN ASN SEQRES 14 B 177 ARG ILE GLN ILE ASP PRO VAL LYS HET NAG A 601 14 HET NAG A 602 14 HET NAG B 501 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) HELIX 1 AA1 LEU A 57 GLY A 62 1 6 HELIX 2 AA2 PRO A 63 LEU A 70 5 8 HELIX 3 AA3 ASN A 94 GLU A 104 1 11 HELIX 4 AA4 SER A 178 GLY A 187 1 10 HELIX 5 AA5 TYR B 359 ILE B 377 1 19 HELIX 6 AA6 GLU B 395 LEU B 447 1 53 HELIX 7 AA7 ASP B 466 ASN B 475 1 10 HELIX 8 AA8 TYR B 483 GLN B 489 1 7 SHEET 1 AA1 3 CYS A 4 HIS A 7 0 SHEET 2 AA1 3 TYR B 343 GLN B 348 -1 O ARG B 346 N CYS A 4 SHEET 3 AA1 3 GLU B 353 ALA B 357 -1 O ALA B 356 N PHE B 345 SHEET 1 AA2 2 THR A 14 ASN A 17 0 SHEET 2 AA2 2 ARG A 22 VAL A 26 -1 O VAL A 26 N THR A 14 SHEET 1 AA3 2 ALA A 29 GLU A 31 0 SHEET 2 AA3 2 LEU A 306 ALA A 308 -1 O LEU A 307 N THR A 30 SHEET 1 AA4 3 VAL A 33 GLU A 34 0 SHEET 2 AA4 3 PHE A 285 GLN A 286 1 O PHE A 285 N GLU A 34 SHEET 3 AA4 3 ARG A 298 TYR A 299 1 O ARG A 298 N GLN A 286 SHEET 1 AA5 2 ARG A 40 CYS A 42 0 SHEET 2 AA5 2 GLN A 263 ASP A 265 1 O GLN A 263 N ILE A 41 SHEET 1 AA6 3 THR A 48 ASP A 50 0 SHEET 2 AA6 3 LEU A 76 GLU A 79 1 O ILE A 78 N VAL A 49 SHEET 3 AA6 3 MET A 256 GLN A 259 1 O MET A 256 N ILE A 77 SHEET 1 AA7 5 GLY A 90 PHE A 92 0 SHEET 2 AA7 5 ARG A 220 LEU A 228 1 O PHE A 223 N LYS A 91 SHEET 3 AA7 5 ALA A 167 HIS A 175 -1 N ILE A 169 O LEU A 226 SHEET 4 AA7 5 ARG A 247 LEU A 251 -1 O SER A 249 N LEU A 168 SHEET 5 AA7 5 ILE A 108 ALA A 112 -1 N GLU A 111 O ALA A 248 SHEET 1 AA8 5 GLY A 90 PHE A 92 0 SHEET 2 AA8 5 ARG A 220 LEU A 228 1 O PHE A 223 N LYS A 91 SHEET 3 AA8 5 ALA A 167 HIS A 175 -1 N ILE A 169 O LEU A 226 SHEET 4 AA8 5 PHE A 242 PRO A 245 -1 O ILE A 243 N GLY A 172 SHEET 5 AA8 5 MET A 140 LEU A 143 -1 N LEU A 143 O PHE A 242 SHEET 1 AA9 2 THR A 126 ARG A 130 0 SHEET 2 AA9 2 SER A 134 SER A 135 -1 O SER A 135 N CYS A 129 SHEET 1 AB1 3 MET A 155 LYS A 160 0 SHEET 2 AB1 3 THR A 233 PHE A 238 -1 O VAL A 234 N TYR A 159 SHEET 3 AB1 3 THR A 194 GLY A 196 -1 N THR A 194 O SER A 237 SHEET 1 AB2 3 GLY A 277 THR A 278 0 SHEET 2 AB2 3 CYS A 272 HIS A 274 -1 N HIS A 274 O GLY A 277 SHEET 3 AB2 3 VAL A 293 GLY A 294 -1 O VAL A 293 N TYR A 273 SHEET 1 AB3 2 ALA B 451 GLU B 453 0 SHEET 2 AB3 2 PHE B 459 ILE B 461 -1 O GLU B 460 N GLU B 452 SSBOND 1 CYS A 4 CYS B 458 1555 1555 2.03 SSBOND 2 CYS A 42 CYS A 268 1555 1555 2.03 SSBOND 3 CYS A 54 CYS A 66 1555 1555 2.03 SSBOND 4 CYS A 87 CYS A 129 1555 1555 2.03 SSBOND 5 CYS A 272 CYS A 296 1555 1555 2.03 SSBOND 6 CYS B 465 CYS B 469 1555 1555 2.03 LINK ND2 ASN A 28 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 231 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN B 403 C1 NAG B 501 1555 1555 1.44 CRYST1 117.243 117.243 294.129 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008529 0.004924 0.000000 0.00000 SCALE2 0.000000 0.009849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003400 0.00000