HEADER PLANT PROTEIN 10-SEP-18 6IDN TITLE CRYSTAL STRUCTURE OF ICCHI CHITINASE FROM IPOMOEA CARNEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ICCHI, A GLYCOSYLATED CHITINASE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: IPOMOEA CARNEA; SOURCE 3 ORGANISM_TAXID: 89640 KEYWDS CHITINASE, GLYCOSYLATION, TIM BARREL, IPOMOEA CARNEA, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KUMAR,A.KUMAR,A.K.PATEL REVDAT 4 22-NOV-23 6IDN 1 HETSYN LINK REVDAT 3 29-JUL-20 6IDN 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 03-JUN-20 6IDN 1 JRNL REVDAT 1 21-NOV-18 6IDN 0 JRNL AUTH S.KUMAR,A.KUMAR,A.K.PATEL JRNL TITL TIM BARREL FOLD AND GLYCAN MOIETIES IN THE STRUCTURE OF JRNL TITL 2 ICCHI, A PROTEIN WITH CHITINASE AND LYSOZYME ACTIVITY. JRNL REF PHYTOCHEMISTRY V. 170 12221 2020 JRNL REFN ISSN 0031-9422 JRNL PMID 31790908 JRNL DOI 10.1016/J.PHYTOCHEM.2019.112221 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0100 - 3.9300 0.99 2900 143 0.1691 0.2148 REMARK 3 2 3.9300 - 3.1200 1.00 2744 138 0.1668 0.1920 REMARK 3 3 3.1200 - 2.7300 1.00 2707 140 0.1835 0.2211 REMARK 3 4 2.7300 - 2.4800 1.00 2680 133 0.1808 0.2102 REMARK 3 5 2.4800 - 2.3000 1.00 2647 169 0.1798 0.2162 REMARK 3 6 2.3000 - 2.1600 1.00 2670 136 0.1815 0.1920 REMARK 3 7 2.1600 - 2.0600 1.00 2624 142 0.1814 0.2233 REMARK 3 8 2.0600 - 1.9700 1.00 2641 144 0.1970 0.2235 REMARK 3 9 1.9700 - 1.8900 1.00 2645 131 0.1914 0.2359 REMARK 3 10 1.8900 - 1.8200 1.00 2610 137 0.2057 0.2483 REMARK 3 11 1.8200 - 1.7700 1.00 2633 134 0.2073 0.2434 REMARK 3 12 1.7700 - 1.7200 1.00 2640 112 0.2235 0.2745 REMARK 3 13 1.7200 - 1.6700 1.00 2619 148 0.2310 0.3011 REMARK 3 14 1.6700 - 1.6300 1.00 2587 141 0.2322 0.2664 REMARK 3 15 1.6300 - 1.5900 1.00 2602 150 0.2463 0.2696 REMARK 3 16 1.5900 - 1.5600 1.00 2574 139 0.2716 0.2787 REMARK 3 17 1.5600 - 1.5300 1.00 2603 136 0.3095 0.3597 REMARK 3 18 1.5300 - 1.5000 1.00 2596 148 0.3292 0.3300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.184 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.592 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2422 REMARK 3 ANGLE : 0.896 3339 REMARK 3 CHIRALITY : 0.057 384 REMARK 3 PLANARITY : 0.006 421 REMARK 3 DIHEDRAL : 5.113 1829 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1447 22.8929 26.7768 REMARK 3 T TENSOR REMARK 3 T11: 0.3471 T22: 0.1146 REMARK 3 T33: 0.1779 T12: -0.0324 REMARK 3 T13: 0.0114 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.7703 L22: 1.8655 REMARK 3 L33: 2.5146 L12: -0.2057 REMARK 3 L13: -0.4178 L23: -0.1361 REMARK 3 S TENSOR REMARK 3 S11: -0.2629 S12: 0.1618 S13: -0.3262 REMARK 3 S21: -0.2713 S22: 0.1092 S23: 0.0082 REMARK 3 S31: 0.7701 S32: -0.1019 S33: 0.1443 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2795 15.6926 31.9110 REMARK 3 T TENSOR REMARK 3 T11: 0.6928 T22: 0.1390 REMARK 3 T33: 0.2461 T12: -0.0811 REMARK 3 T13: 0.0686 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.5594 L22: 2.3275 REMARK 3 L33: 2.7092 L12: -0.8201 REMARK 3 L13: -0.7749 L23: 0.5711 REMARK 3 S TENSOR REMARK 3 S11: -0.4343 S12: 0.0954 S13: -0.3837 REMARK 3 S21: -0.1253 S22: 0.2202 S23: 0.1307 REMARK 3 S31: 1.6758 S32: -0.6642 S33: 0.2947 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9089 27.2469 40.1371 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.1246 REMARK 3 T33: 0.1221 T12: -0.0169 REMARK 3 T13: -0.0186 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.1511 L22: 3.1650 REMARK 3 L33: 3.2244 L12: -0.3187 REMARK 3 L13: -0.4816 L23: -0.6247 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: 0.0181 S13: -0.0191 REMARK 3 S21: -0.1325 S22: 0.0928 S23: 0.1761 REMARK 3 S31: 0.2835 S32: -0.3507 S33: -0.0796 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9334 32.4617 40.1785 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.0984 REMARK 3 T33: 0.1234 T12: -0.0008 REMARK 3 T13: 0.0158 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.4772 L22: 2.3434 REMARK 3 L33: 4.1376 L12: 0.6396 REMARK 3 L13: 0.2955 L23: -0.5663 REMARK 3 S TENSOR REMARK 3 S11: -0.0662 S12: -0.0404 S13: 0.0060 REMARK 3 S21: -0.0157 S22: 0.0493 S23: 0.0745 REMARK 3 S31: 0.1793 S32: -0.1870 S33: 0.0247 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3895 39.3112 31.9542 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.0990 REMARK 3 T33: 0.1504 T12: 0.0193 REMARK 3 T13: 0.0071 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.0722 L22: 1.2421 REMARK 3 L33: 4.3842 L12: 1.3044 REMARK 3 L13: -1.0440 L23: 0.7611 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: -0.0021 S13: 0.1572 REMARK 3 S21: -0.0550 S22: 0.0859 S23: 0.0570 REMARK 3 S31: -0.2227 S32: -0.2725 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5836 41.3041 24.5679 REMARK 3 T TENSOR REMARK 3 T11: 0.1067 T22: 0.1079 REMARK 3 T33: 0.1712 T12: 0.0022 REMARK 3 T13: -0.0073 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.5509 L22: 0.1775 REMARK 3 L33: 9.0385 L12: 0.4143 REMARK 3 L13: -0.1665 L23: -0.2360 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: 0.0839 S13: 0.0651 REMARK 3 S21: -0.0113 S22: 0.0808 S23: 0.1129 REMARK 3 S31: -0.0982 S32: -0.3710 S33: -0.0423 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5463 40.7693 19.9473 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.1176 REMARK 3 T33: 0.1277 T12: -0.0215 REMARK 3 T13: 0.0011 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.3135 L22: 2.1468 REMARK 3 L33: 4.8668 L12: 0.4774 REMARK 3 L13: 0.4716 L23: 0.4063 REMARK 3 S TENSOR REMARK 3 S11: -0.1142 S12: 0.1650 S13: 0.0612 REMARK 3 S21: -0.0949 S22: 0.0920 S23: 0.0751 REMARK 3 S31: -0.1900 S32: -0.0106 S33: -0.0044 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1191 37.2752 18.3397 REMARK 3 T TENSOR REMARK 3 T11: 0.1019 T22: 0.1625 REMARK 3 T33: 0.1569 T12: 0.0117 REMARK 3 T13: 0.0142 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.0569 L22: 2.2024 REMARK 3 L33: 5.8538 L12: 0.5624 REMARK 3 L13: 0.3954 L23: 0.4530 REMARK 3 S TENSOR REMARK 3 S11: -0.0872 S12: 0.1733 S13: 0.0124 REMARK 3 S21: -0.0664 S22: 0.1691 S23: -0.2285 REMARK 3 S31: 0.0270 S32: 0.5685 S33: -0.0807 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6859 25.4213 14.7528 REMARK 3 T TENSOR REMARK 3 T11: 0.3640 T22: 0.1625 REMARK 3 T33: 0.1716 T12: 0.0291 REMARK 3 T13: 0.0286 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 9.1555 L22: 4.4913 REMARK 3 L33: 4.2918 L12: 1.8214 REMARK 3 L13: -1.2557 L23: -0.1659 REMARK 3 S TENSOR REMARK 3 S11: -0.0967 S12: 0.4061 S13: -0.7151 REMARK 3 S21: -0.3549 S22: 0.0743 S23: -0.2983 REMARK 3 S31: 0.9395 S32: 0.1014 S33: 0.0377 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300009013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98401 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50243 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HVQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MM COBALT CHLORIDE, 5MM CADMIUM REMARK 280 CHLORIDE, 5MM MAGNESIUM CHLORIDE, 5MM NICKLE CHLORIDE, 100MM REMARK 280 HEPES PH 7.0, 11% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.60000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.74500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.40000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.74500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.80000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 128.40000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.80000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 47 -122.89 34.87 REMARK 500 ASN A 84 72.86 -119.53 REMARK 500 TYR A 86 157.11 177.01 REMARK 500 LEU A 105 -135.48 -101.87 REMARK 500 SER A 111 113.12 -165.04 REMARK 500 ASP A 125 60.39 -103.57 REMARK 500 ASP A 263 12.28 -148.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 743 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 314 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 108 OE1 REMARK 620 2 ASP A 116 OD1 104.9 REMARK 620 3 HOH A 575 O 151.4 103.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 313 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 116 OD1 REMARK 620 2 ASP A 116 OD2 48.0 REMARK 620 3 ASP A 235 OD2 18.8 31.0 REMARK 620 4 HOH A 410 O 20.2 29.2 1.9 REMARK 620 N 1 2 3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS SUBMITTED THE SEQUENCE IN GENBANK DATABASE (ACCESSION REMARK 999 NUMBER: MH973622). DBREF 6IDN A 1 272 PDB 6IDN 6IDN 1 272 SEQRES 1 A 272 GLY GLU ILE ALA ILE TYR TRP GLY GLN ASP GLY GLY GLU SEQRES 2 A 272 GLY SER LEU ARG GLU THR CYS ASP THR ASP ASP TYR ASP SEQRES 3 A 272 ILE ILE ASN ILE GLY PHE LEU THR THR PHE GLY HIS SER SEQRES 4 A 272 THR THR PRO ILE LEU ASN LEU THR LYS HIS CYS ASN PRO SEQRES 5 A 272 ALA THR SER ALA CYS LYS PHE LEU SER SER GLU ILE SER SEQRES 6 A 272 TYR CYS LYS SER LYS GLY ILE LYS VAL PHE LEU SER LEU SEQRES 7 A 272 GLY GLY GLY THR GLY ASN TYR TYR LEU SER SER ARG ASP SEQRES 8 A 272 ASP ALA ALA SER VAL ALA GLN TYR LEU TRP ASN ASN PHE SEQRES 9 A 272 LEU GLY GLY GLN SER GLU SER ARG PRO LEU GLY ASP GLU SEQRES 10 A 272 SER LEU ASP GLY ILE ASP PHE ASP ILE GLU ASP GLY SER SEQRES 11 A 272 ASN ASP TYR TYR ASP THR LEU ALA GLU GLN LEU TRP ILE SEQRES 12 A 272 LEU GLY GLY ARG SER GLY SER ASN VAL TYR LEU ALA ALA SEQRES 13 A 272 ALA PRO ALA CYS GLU PHE PRO ASP TYR TYR LEU ARG GLU SEQRES 14 A 272 ALA ILE ASN THR SER LEU PHE ASP TYR VAL TRP VAL GLN SEQRES 15 A 272 PHE TYR ASN ASN PRO ARG CYS HIS TYR LEU GLY ASN ALA SEQRES 16 A 272 THR ASN LEU LEU ASN SER TRP ASN ASN ASP TRP SER THR SEQRES 17 A 272 ILE LEU THR ASP ASP LEU PHE LEU GLY LEU PRO ALA ALA SEQRES 18 A 272 PRO GLN ALA ALA PRO GLY GLY GLY PHE ILE GLU ALA ASP SEQRES 19 A 272 ASP LEU ILE SER GLU VAL LEU PRO THR ILE LYS ALA THR SEQRES 20 A 272 TYR ASP TYR GLY GLY VAL MET LEU TRP SER LYS TYR TYR SEQRES 21 A 272 ASP ASP ASP TYR SER SER LYS ILE LYS PRO ASP VAL HET NAG B 1 14 HET FUC B 2 10 HET NAG B 3 14 HET NAG C 1 14 HET FUC C 2 10 HET NAG C 3 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET XYP D 4 9 HET MAN D 5 11 HET FUC D 6 10 HET CA A 313 1 HET CA A 314 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 FUC 3(C6 H12 O5) FORMUL 4 BMA C6 H12 O6 FORMUL 4 XYP C5 H10 O5 FORMUL 4 MAN C6 H12 O6 FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *343(H2 O) HELIX 1 AA1 SER A 15 THR A 22 1 8 HELIX 2 AA2 ASN A 51 SER A 55 5 5 HELIX 3 AA3 PHE A 59 LYS A 70 1 12 HELIX 4 AA4 SER A 89 PHE A 104 1 16 HELIX 5 AA5 TYR A 133 GLY A 149 1 17 HELIX 6 AA6 LEU A 167 ASN A 172 1 6 HELIX 7 AA7 ALA A 195 ASP A 205 1 11 HELIX 8 AA8 TRP A 206 ILE A 209 5 4 HELIX 9 AA9 ALA A 221 ALA A 225 5 5 HELIX 10 AB1 GLU A 232 VAL A 240 1 9 HELIX 11 AB2 VAL A 240 LYS A 245 1 6 HELIX 12 AB3 SER A 257 ASP A 261 5 5 HELIX 13 AB4 ASP A 263 LYS A 269 1 7 HELIX 14 AB5 PRO A 270 VAL A 272 5 3 SHEET 1 AA111 ILE A 43 LEU A 44 0 SHEET 2 AA111 ASN A 84 TYR A 85 0 SHEET 3 AA111 GLU A 2 TRP A 7 0 SHEET 4 AA111 TYR A 250 TRP A 256 1 O LEU A 255 N ALA A 4 SHEET 5 AA111 ASP A 213 PRO A 219 1 N LEU A 214 O GLY A 251 SHEET 6 AA111 TYR A 178 GLN A 182 1 N VAL A 179 O PHE A 215 SHEET 7 AA111 TYR A 153 ALA A 156 1 N ALA A 156 O TRP A 180 SHEET 8 AA111 GLY A 121 ILE A 126 1 N PHE A 124 O ALA A 155 SHEET 9 AA111 LYS A 73 GLY A 80 1 N LEU A 78 O ASP A 123 SHEET 10 AA111 ILE A 27 PHE A 36 1 N ILE A 30 O PHE A 75 SHEET 11 AA111 ASN A 84 TYR A 85 1 O ASN A 84 N THR A 34 SSBOND 1 CYS A 20 CYS A 67 1555 1555 2.04 SSBOND 2 CYS A 50 CYS A 57 1555 1555 2.05 SSBOND 3 CYS A 160 CYS A 189 1555 1555 2.05 LINK ND2 ASN A 45 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 172 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 194 C1 NAG D 1 1555 1555 1.43 LINK O3 NAG B 1 C1 FUC B 2 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 3 1555 1555 1.44 LINK O3 NAG C 1 C1 FUC C 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 3 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O3 NAG D 1 C1 FUC D 6 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O2 BMA D 3 C1 XYP D 4 1555 1555 1.37 LINK O3 BMA D 3 C1 MAN D 5 1555 1555 1.45 LINK OE1 GLN A 108 CA CA A 314 1555 1555 2.53 LINK OD1 ASP A 116 CA CA A 313 1555 4455 2.94 LINK OD2 ASP A 116 CA CA A 313 1555 4455 2.17 LINK OD1 ASP A 116 CA CA A 314 1555 1555 2.75 LINK OD2 ASP A 235 CA CA A 313 1555 1555 2.23 LINK CA CA A 313 O HOH A 410 1555 1555 2.23 LINK CA CA A 314 O HOH A 575 1555 4455 2.67 CISPEP 1 GLY A 31 PHE A 32 0 6.09 CISPEP 2 PHE A 162 PRO A 163 0 -2.91 CISPEP 3 TRP A 256 SER A 257 0 0.55 CRYST1 59.490 59.490 171.200 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005841 0.00000