HEADER LIGASE 11-SEP-18 6IDV TITLE PEPTIDE ASPARAGINYL LIGASES FROM VIOLA YEDOENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE ASPARAGINYL LIGASES; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIOLA PHILIPPICA; SOURCE 3 ORGANISM_TAXID: 316493; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PEPTIDE LIGASE, PAL, AEP, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.EL SAHILI,S.HU,J.LESCAR REVDAT 6 24-JAN-24 6IDV 1 COMPND REMARK SEQRES SHEET REVDAT 6 2 1 LINK ATOM REVDAT 5 22-NOV-23 6IDV 1 REMARK REVDAT 4 15-NOV-23 6IDV 1 REMARK HETSYN LINK ATOM REVDAT 3 29-JUL-20 6IDV 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 27-NOV-19 6IDV 1 JRNL REVDAT 1 15-MAY-19 6IDV 0 JRNL AUTH X.HEMU,A.EL SAHILI,S.HU,K.WONG,Y.CHEN,Y.H.WONG,X.ZHANG, JRNL AUTH 2 A.SERRA,B.C.GOH,D.A.DARWIS,M.W.CHEN,S.K.SZE,C.F.LIU, JRNL AUTH 3 J.LESCAR,J.P.TAM JRNL TITL STRUCTURAL DETERMINANTS FOR PEPTIDE-BOND FORMATION BY JRNL TITL 2 ASPARAGINYL LIGASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 11737 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31123145 JRNL DOI 10.1073/PNAS.1818568116 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2077 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.82 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2970 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2360 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2821 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 161 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13130 REMARK 3 B22 (A**2) : 5.08200 REMARK 3 B33 (A**2) : -3.95060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.02760 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.000 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.358 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.227 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.344 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.227 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6951 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9430 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2301 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 168 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 997 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6951 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 939 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8321 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.77 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.01 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 27.4464 -0.9880 13.9628 REMARK 3 T TENSOR REMARK 3 T11: -0.0089 T22: -0.0135 REMARK 3 T33: -0.0920 T12: 0.0071 REMARK 3 T13: -0.0065 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.4715 L22: 0.6142 REMARK 3 L33: 0.2240 L12: 0.1030 REMARK 3 L13: -0.0034 L23: 0.1288 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.0634 S13: -0.0561 REMARK 3 S21: 0.0739 S22: -0.0224 S23: 0.0091 REMARK 3 S31: 0.0042 S32: 0.0126 S33: 0.0191 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 6.6617 31.3245 30.3331 REMARK 3 T TENSOR REMARK 3 T11: -0.0266 T22: -0.0288 REMARK 3 T33: -0.1076 T12: -0.0014 REMARK 3 T13: -0.0109 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.4536 L22: 0.7074 REMARK 3 L33: 0.5676 L12: -0.2211 REMARK 3 L13: 0.1001 L23: -0.0444 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.0558 S13: -0.0109 REMARK 3 S21: 0.0162 S22: 0.0762 S23: -0.0227 REMARK 3 S31: -0.0198 S32: -0.0642 S33: -0.0339 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300009028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41522 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.21000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5H0I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 0.2M MAGNESIUM FORMATE, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.40000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.40000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 LEU A 3 REMARK 465 PHE A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 VAL A 8 REMARK 465 ILE A 9 REMARK 465 LEU A 10 REMARK 465 PHE A 11 REMARK 465 PHE A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 THR A 19 REMARK 465 ILE A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 ASP A 25 REMARK 465 VAL A 26 REMARK 465 ASP A 27 REMARK 465 SER A 28 REMARK 465 LEU A 29 REMARK 465 GLN A 30 REMARK 465 LEU A 31 REMARK 465 PRO A 32 REMARK 465 SER A 33 REMARK 465 GLU A 34 REMARK 465 ALA A 35 REMARK 465 ALA A 36 REMARK 465 LYS A 37 REMARK 465 PHE A 38 REMARK 465 PHE A 39 REMARK 465 HIS A 40 REMARK 465 ASN A 41 REMARK 465 ASP A 42 REMARK 465 ASN A 43 REMARK 465 SER A 44 REMARK 465 THR A 45 REMARK 465 ASN A 46 REMARK 465 ASP A 47 REMARK 465 ASP A 48 REMARK 465 ASP A 49 REMARK 465 SER A 50 REMARK 465 ASP A 330 REMARK 465 GLU A 331 REMARK 465 ASN A 332 REMARK 465 SER A 333 REMARK 465 LEU A 334 REMARK 465 ARG A 335 REMARK 465 PRO A 336 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 LEU B 3 REMARK 465 PHE B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 GLY B 7 REMARK 465 VAL B 8 REMARK 465 ILE B 9 REMARK 465 LEU B 10 REMARK 465 PHE B 11 REMARK 465 PHE B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 ALA B 15 REMARK 465 LEU B 16 REMARK 465 SER B 17 REMARK 465 GLY B 18 REMARK 465 THR B 19 REMARK 465 ILE B 20 REMARK 465 ALA B 21 REMARK 465 GLY B 22 REMARK 465 GLY B 23 REMARK 465 LEU B 24 REMARK 465 ASP B 25 REMARK 465 VAL B 26 REMARK 465 ASP B 27 REMARK 465 SER B 28 REMARK 465 LEU B 29 REMARK 465 GLN B 30 REMARK 465 LEU B 31 REMARK 465 PRO B 32 REMARK 465 SER B 33 REMARK 465 GLU B 34 REMARK 465 ALA B 35 REMARK 465 ALA B 36 REMARK 465 LYS B 37 REMARK 465 PHE B 38 REMARK 465 PHE B 39 REMARK 465 HIS B 40 REMARK 465 ASN B 41 REMARK 465 ASP B 42 REMARK 465 ASN B 43 REMARK 465 SER B 44 REMARK 465 THR B 45 REMARK 465 ASN B 46 REMARK 465 ASP B 47 REMARK 465 ASP B 48 REMARK 465 ASP B 49 REMARK 465 SER B 50 REMARK 465 ILE B 51 REMARK 465 GLU B 331 REMARK 465 ASN B 332 REMARK 465 SER B 333 REMARK 465 LEU B 334 REMARK 465 ARG B 335 REMARK 465 PRO B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 170 O - C - N ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 97 42.24 71.99 REMARK 500 LEU A 223 -55.32 -121.68 REMARK 500 THR A 250 -69.44 -152.03 REMARK 500 PRO A 251 -99.07 -95.33 REMARK 500 ALA A 295 -37.43 -38.06 REMARK 500 ALA A 297 -64.48 -100.31 REMARK 500 SER A 435 -155.43 66.20 REMARK 500 ASP B 97 40.29 81.79 REMARK 500 ILE B 99 -60.23 -107.10 REMARK 500 LEU B 223 -55.66 -124.50 REMARK 500 THR B 250 -46.35 -150.53 REMARK 500 PRO B 251 -129.04 -91.54 REMARK 500 ASP B 252 54.32 -112.89 REMARK 500 ALA B 297 -62.50 -100.73 REMARK 500 SER B 435 -152.06 60.31 REMARK 500 SER B 435 -151.67 60.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 170 14.95 REMARK 500 ALA B 170 17.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 805 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 806 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH A 808 DISTANCE = 8.41 ANGSTROMS REMARK 525 HOH A 809 DISTANCE = 8.54 ANGSTROMS REMARK 525 HOH A 810 DISTANCE = 9.16 ANGSTROMS REMARK 525 HOH A 811 DISTANCE = 13.05 ANGSTROMS REMARK 525 HOH A 812 DISTANCE = 13.61 ANGSTROMS REMARK 525 HOH B1002 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B1003 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B1005 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH B1006 DISTANCE = 8.26 ANGSTROMS REMARK 525 HOH B1007 DISTANCE = 8.84 ANGSTROMS REMARK 525 HOH B1008 DISTANCE = 8.96 ANGSTROMS REMARK 525 HOH B1009 DISTANCE = 9.27 ANGSTROMS REMARK 525 HOH B1011 DISTANCE = 10.71 ANGSTROMS REMARK 525 HOH B1012 DISTANCE = 11.11 ANGSTROMS REMARK 525 HOH B1013 DISTANCE = 11.20 ANGSTROMS REMARK 525 HOH B1014 DISTANCE = 14.45 ANGSTROMS REMARK 525 HOH B1015 DISTANCE = 17.25 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 501 REMARK 610 NAG B 702 DBREF 6IDV A 1 483 PDB 6IDV 6IDV 1 483 DBREF 6IDV B 1 483 PDB 6IDV 6IDV 1 483 SEQRES 1 A 483 MET GLN LEU PHE ALA ALA GLY VAL ILE LEU PHE PHE LEU SEQRES 2 A 483 LEU ALA LEU SER GLY THR ILE ALA GLY GLY LEU ASP VAL SEQRES 3 A 483 ASP SER LEU GLN LEU PRO SER GLU ALA ALA LYS PHE PHE SEQRES 4 A 483 HIS ASN ASP ASN SER THR ASN ASP ASP ASP SER ILE GLY SEQRES 5 A 483 THR ARG TRP ALA VAL LEU ILE ALA GLY SER LYS GLY TYR SEQRES 6 A 483 HIS ASN TYR ARG HIS GLN ALA ASP VAL CYS HIS MET TYR SEQRES 7 A 483 GLN ILE LEU ARG LYS GLY GLY VAL LYS ASP GLU ASN ILE SEQRES 8 A 483 ILE VAL PHE MET TYR ASP ASP ILE ALA TYR ASN GLU SER SEQRES 9 A 483 ASN PRO PHE PRO GLY ILE ILE ILE ASN LYS PRO GLY GLY SEQRES 10 A 483 GLU ASN VAL TYR LYS GLY VAL PRO LYS ASP TYR THR GLY SEQRES 11 A 483 GLU ASP ILE ASN ASN VAL ASN PHE LEU ALA ALA ILE LEU SEQRES 12 A 483 GLY ASN LYS SER ALA ILE ILE GLY GLY SER GLY LYS VAL SEQRES 13 A 483 LEU ASP THR SER PRO ASN ASP HIS ILE PHE ILE TYR TYR SEQRES 14 A 483 ALA SNN HIS GLY ALA PRO GLY LYS ILE GLY MET PRO SER SEQRES 15 A 483 LYS PRO TYR LEU TYR ALA ASP ASP LEU VAL ASP THR LEU SEQRES 16 A 483 LYS GLN LYS ALA ALA THR GLY THR TYR LYS SER MET VAL SEQRES 17 A 483 PHE TYR VAL GLU ALA CYS ASN ALA GLY SER MET PHE GLU SEQRES 18 A 483 GLY LEU LEU PRO GLU GLY THR ASN ILE TYR ALA MET ALA SEQRES 19 A 483 ALA SER ASN SER THR GLU GLY SER TRP ILE THR TYR CYS SEQRES 20 A 483 PRO GLY THR PRO ASP PHE PRO PRO GLU PHE ASP VAL CYS SEQRES 21 A 483 LEU GLY ASP LEU TRP SER ILE THR PHE LEU GLU ASP CYS SEQRES 22 A 483 ASP ALA HIS ASN LEU ARG THR GLU THR VAL HIS GLN GLN SEQRES 23 A 483 PHE GLU LEU VAL LYS LYS LYS ILE ALA TYR ALA SER THR SEQRES 24 A 483 VAL SER GLN TYR GLY ASP ILE PRO ILE SER LYS ASP SER SEQRES 25 A 483 LEU SER VAL TYR MET GLY THR ASP PRO ALA ASN ASP ASN SEQRES 26 A 483 ARG THR PHE VAL ASP GLU ASN SER LEU ARG PRO PRO LEU SEQRES 27 A 483 LYS VAL ILE HIS GLN HIS ASP ALA ASP LEU TYR HIS ILE SEQRES 28 A 483 TRP CYS LYS TYR ASN MET ALA PRO GLU GLY SER SER LYS SEQRES 29 A 483 LYS ILE GLU ALA GLN LYS GLN LEU LEU GLU LEU MET SER SEQRES 30 A 483 HIS ARG ALA HIS VAL ASP ASN SER ILE THR LEU ILE GLY SEQRES 31 A 483 LYS LEU LEU PHE GLY VAL ASN LYS ALA SER LYS VAL LEU SEQRES 32 A 483 ASN THR VAL ARG PRO VAL GLY GLN PRO LEU VAL ASP ASP SEQRES 33 A 483 TRP GLN CYS LEU LYS ALA MET ILE ARG THR PHE GLU THR SEQRES 34 A 483 HIS CYS GLY SER LEU SER GLU TYR GLY MET LYS HIS THR SEQRES 35 A 483 LEU SER PHE ALA ASN MET CYS ASN ALA GLY ILE GLN LYS SEQRES 36 A 483 GLU GLN LEU ALA GLU ALA ALA ALA GLN ALA CYS VAL THR SEQRES 37 A 483 PHE PRO SER ASN PRO TYR SER SER LEU ALA GLU GLY PHE SEQRES 38 A 483 SER ALA SEQRES 1 B 483 MET GLN LEU PHE ALA ALA GLY VAL ILE LEU PHE PHE LEU SEQRES 2 B 483 LEU ALA LEU SER GLY THR ILE ALA GLY GLY LEU ASP VAL SEQRES 3 B 483 ASP SER LEU GLN LEU PRO SER GLU ALA ALA LYS PHE PHE SEQRES 4 B 483 HIS ASN ASP ASN SER THR ASN ASP ASP ASP SER ILE GLY SEQRES 5 B 483 THR ARG TRP ALA VAL LEU ILE ALA GLY SER LYS GLY TYR SEQRES 6 B 483 HIS ASN TYR ARG HIS GLN ALA ASP VAL CYS HIS MET TYR SEQRES 7 B 483 GLN ILE LEU ARG LYS GLY GLY VAL LYS ASP GLU ASN ILE SEQRES 8 B 483 ILE VAL PHE MET TYR ASP ASP ILE ALA TYR ASN GLU SER SEQRES 9 B 483 ASN PRO PHE PRO GLY ILE ILE ILE ASN LYS PRO GLY GLY SEQRES 10 B 483 GLU ASN VAL TYR LYS GLY VAL PRO LYS ASP TYR THR GLY SEQRES 11 B 483 GLU ASP ILE ASN ASN VAL ASN PHE LEU ALA ALA ILE LEU SEQRES 12 B 483 GLY ASN LYS SER ALA ILE ILE GLY GLY SER GLY LYS VAL SEQRES 13 B 483 LEU ASP THR SER PRO ASN ASP HIS ILE PHE ILE TYR TYR SEQRES 14 B 483 ALA SNN HIS GLY ALA PRO GLY LYS ILE GLY MET PRO SER SEQRES 15 B 483 LYS PRO TYR LEU TYR ALA ASP ASP LEU VAL ASP THR LEU SEQRES 16 B 483 LYS GLN LYS ALA ALA THR GLY THR TYR LYS SER MET VAL SEQRES 17 B 483 PHE TYR VAL GLU ALA CYS ASN ALA GLY SER MET PHE GLU SEQRES 18 B 483 GLY LEU LEU PRO GLU GLY THR ASN ILE TYR ALA MET ALA SEQRES 19 B 483 ALA SER ASN SER THR GLU GLY SER TRP ILE THR TYR CYS SEQRES 20 B 483 PRO GLY THR PRO ASP PHE PRO PRO GLU PHE ASP VAL CYS SEQRES 21 B 483 LEU GLY ASP LEU TRP SER ILE THR PHE LEU GLU ASP CYS SEQRES 22 B 483 ASP ALA HIS ASN LEU ARG THR GLU THR VAL HIS GLN GLN SEQRES 23 B 483 PHE GLU LEU VAL LYS LYS LYS ILE ALA TYR ALA SER THR SEQRES 24 B 483 VAL SER GLN TYR GLY ASP ILE PRO ILE SER LYS ASP SER SEQRES 25 B 483 LEU SER VAL TYR MET GLY THR ASP PRO ALA ASN ASP ASN SEQRES 26 B 483 ARG THR PHE VAL ASP GLU ASN SER LEU ARG PRO PRO LEU SEQRES 27 B 483 LYS VAL ILE HIS GLN HIS ASP ALA ASP LEU TYR HIS ILE SEQRES 28 B 483 TRP CYS LYS TYR ASN MET ALA PRO GLU GLY SER SER LYS SEQRES 29 B 483 LYS ILE GLU ALA GLN LYS GLN LEU LEU GLU LEU MET SER SEQRES 30 B 483 HIS ARG ALA HIS VAL ASP ASN SER ILE THR LEU ILE GLY SEQRES 31 B 483 LYS LEU LEU PHE GLY VAL ASN LYS ALA SER LYS VAL LEU SEQRES 32 B 483 ASN THR VAL ARG PRO VAL GLY GLN PRO LEU VAL ASP ASP SEQRES 33 B 483 TRP GLN CYS LEU LYS ALA MET ILE ARG THR PHE GLU THR SEQRES 34 B 483 HIS CYS GLY SER LEU SER GLU TYR GLY MET LYS HIS THR SEQRES 35 B 483 LEU SER PHE ALA ASN MET CYS ASN ALA GLY ILE GLN LYS SEQRES 36 B 483 GLU GLN LEU ALA GLU ALA ALA ALA GLN ALA CYS VAL THR SEQRES 37 B 483 PHE PRO SER ASN PRO TYR SER SER LEU ALA GLU GLY PHE SEQRES 38 B 483 SER ALA HET SNN A 171 8 HET SNN B 171 8 HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG A 501 14 HET EDO A 502 4 HET NAG B 701 14 HET NAG B 702 14 HET PEG B 703 7 HET EDO B 704 4 HETNAM SNN L-3-AMINOSUCCINIMIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 SNN 2(C4 H6 N2 O2) FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 10 PEG C4 H10 O3 FORMUL 12 HOH *427(H2 O) HELIX 1 AA1 GLY A 64 HIS A 66 5 3 HELIX 2 AA2 ASN A 67 GLY A 84 1 18 HELIX 3 AA3 LYS A 87 GLU A 89 5 3 HELIX 4 AA4 THR A 129 ILE A 133 5 5 HELIX 5 AA5 ASN A 134 GLY A 144 1 11 HELIX 6 AA6 ASN A 145 ILE A 149 5 5 HELIX 7 AA7 ALA A 188 GLY A 202 1 15 HELIX 8 AA8 ASN A 215 PHE A 220 5 6 HELIX 9 AA9 LEU A 264 HIS A 276 1 13 HELIX 10 AB1 THR A 282 ALA A 295 1 14 HELIX 11 AB2 ILE A 306 SER A 312 5 7 HELIX 12 AB3 LEU A 313 GLY A 318 1 6 HELIX 13 AB4 ASP A 320 ASP A 324 5 5 HELIX 14 AB5 ASP A 345 ALA A 358 1 14 HELIX 15 AB6 SER A 362 GLY A 395 1 34 HELIX 16 AB7 LYS A 398 THR A 405 1 8 HELIX 17 AB8 ASP A 416 GLY A 432 1 17 HELIX 18 AB9 GLU A 436 LYS A 440 5 5 HELIX 19 AC1 HIS A 441 ALA A 451 1 11 HELIX 20 AC2 GLN A 454 CYS A 466 1 13 HELIX 21 AC3 ASN A 472 SER A 476 5 5 HELIX 22 AC4 GLY B 64 HIS B 66 5 3 HELIX 23 AC5 ASN B 67 GLY B 84 1 18 HELIX 24 AC6 LYS B 87 GLU B 89 5 3 HELIX 25 AC7 THR B 129 ILE B 133 5 5 HELIX 26 AC8 ASN B 134 GLY B 144 1 11 HELIX 27 AC9 ASN B 145 ILE B 149 5 5 HELIX 28 AD1 ALA B 188 THR B 201 1 14 HELIX 29 AD2 ASN B 215 PHE B 220 5 6 HELIX 30 AD3 LEU B 264 HIS B 276 1 13 HELIX 31 AD4 THR B 282 ALA B 295 1 14 HELIX 32 AD5 ILE B 306 SER B 312 5 7 HELIX 33 AD6 LEU B 313 GLY B 318 1 6 HELIX 34 AD7 ASP B 320 ASP B 324 5 5 HELIX 35 AD8 ASP B 345 ALA B 358 1 14 HELIX 36 AD9 SER B 362 GLY B 395 1 34 HELIX 37 AE1 LYS B 398 ASN B 404 1 7 HELIX 38 AE2 ASP B 416 GLY B 432 1 17 HELIX 39 AE3 GLU B 436 LYS B 440 5 5 HELIX 40 AE4 HIS B 441 ALA B 451 1 11 HELIX 41 AE5 GLN B 454 CYS B 466 1 13 HELIX 42 AE6 ASN B 472 SER B 476 5 5 SHEET 1 AA1 6 ILE A 91 PHE A 94 0 SHEET 2 AA1 6 ARG A 54 ALA A 60 1 N LEU A 58 O ILE A 92 SHEET 3 AA1 6 HIS A 164 ALA A 170 1 O HIS A 164 N TRP A 55 SHEET 4 AA1 6 SER A 206 GLU A 212 1 O TYR A 210 N ILE A 167 SHEET 5 AA1 6 ILE A 230 ALA A 234 1 O MET A 233 N VAL A 211 SHEET 6 AA1 6 SER A 301 GLY A 304 -1 O TYR A 303 N ALA A 232 SHEET 1 AA2 3 GLY A 173 ALA A 174 0 SHEET 2 AA2 3 LYS A 177 ILE A 178 -1 O LYS A 177 N ALA A 174 SHEET 3 AA2 3 LEU A 186 TYR A 187 -1 O LEU A 186 N ILE A 178 SHEET 1 AA3 3 GLY A 262 ASP A 263 0 SHEET 2 AA3 3 TRP A 243 THR A 245 -1 N THR A 245 O GLY A 262 SHEET 3 AA3 3 ILE A 341 HIS A 342 -1 O ILE A 341 N ILE A 244 SHEET 1 AA4 6 ILE B 91 PHE B 94 0 SHEET 2 AA4 6 ARG B 54 ALA B 60 1 N LEU B 58 O ILE B 92 SHEET 3 AA4 6 HIS B 164 ALA B 170 1 O HIS B 164 N TRP B 55 SHEET 4 AA4 6 SER B 206 GLU B 212 1 O TYR B 210 N ILE B 167 SHEET 5 AA4 6 ILE B 230 ALA B 234 1 O MET B 233 N PHE B 209 SHEET 6 AA4 6 SER B 301 GLY B 304 -1 O TYR B 303 N ALA B 232 SHEET 1 AA5 3 GLY B 173 ALA B 174 0 SHEET 2 AA5 3 LYS B 177 ILE B 178 -1 O LYS B 177 N ALA B 174 SHEET 3 AA5 3 LEU B 186 TYR B 187 -1 O LEU B 186 N ILE B 178 SHEET 1 AA6 3 GLY B 262 ASP B 263 0 SHEET 2 AA6 3 TRP B 243 THR B 245 -1 N THR B 245 O GLY B 262 SHEET 3 AA6 3 ILE B 341 HIS B 342 -1 O ILE B 341 N ILE B 244 SSBOND 1 CYS A 247 CYS A 260 1555 1555 2.04 SSBOND 2 CYS A 419 CYS A 449 1555 1555 2.07 SSBOND 3 CYS B 247 CYS B 260 1555 1555 2.04 SSBOND 4 CYS B 419 CYS B 449 1555 1555 2.06 LINK ND2 ASN A 102 C1 NAG D 1 1555 1555 1.43 LINK C ALA A 170 N SNN A 171 1555 1555 1.39 LINK N1 SNN A 171 CA HIS A 172 1555 1555 1.40 LINK ND2 ASN A 237 C1 NAG C 1 1555 1555 1.42 LINK ND2 ASN B 102 C1 NAG E 1 1555 1555 1.42 LINK C ALA B 170 N SNN B 171 1555 1555 1.36 LINK N1 SNN B 171 CA HIS B 172 1555 1555 1.45 LINK ND2 ASN B 237 C1 NAG B 701 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.41 LINK O4 NAG C 2 C1 FUC C 3 1555 1555 1.42 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.41 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.42 LINK O4 NAG E 2 C1 FUC E 3 1555 1555 1.46 CISPEP 1 LYS A 183 PRO A 184 0 2.23 CISPEP 2 LYS B 183 PRO B 184 0 2.73 CRYST1 156.800 69.800 104.480 90.00 110.22 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006378 0.000000 0.002349 0.00000 SCALE2 0.000000 0.014327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010200 0.00000