HEADER ENDOCYTOSIS 18-SEP-18 6IF2 TITLE COMPLEX STRUCTURE OF RAB35 AND ITS EFFECTOR RUSC2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-35; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: GTP-BINDING PROTEIN RAY,RAS-RELATED PROTEIN RAB-1C; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IPORIN; COMPND 9 CHAIN: A; COMPND 10 SYNONYM: INTERACTING PROTEIN OF RAB1,RUN AND SH3 DOMAIN-CONTAINING COMPND 11 PROTEIN 2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB35, RAB1C, RAY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: RUSC2, KIAA0375; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RAB35, RUSC2, COMPLEX, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR L.LIN,J.ZHU,R.ZHANG REVDAT 4 22-NOV-23 6IF2 1 REMARK REVDAT 3 22-MAY-19 6IF2 1 JRNL REVDAT 2 10-APR-19 6IF2 1 JRNL REVDAT 1 03-APR-19 6IF2 0 JRNL AUTH L.LIN,Y.SHI,M.WANG,C.WANG,J.ZHU,R.ZHANG JRNL TITL RAB35/ACAP2 AND RAB35/RUSC2 COMPLEX STRUCTURES REVEAL JRNL TITL 2 MOLECULAR BASIS FOR EFFECTOR RECOGNITION BY RAB35 GTPASE. JRNL REF STRUCTURE V. 27 729 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 30905672 JRNL DOI 10.1016/J.STR.2019.02.008 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 29959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0623 - 5.3354 0.97 2632 152 0.1536 0.1824 REMARK 3 2 5.3354 - 4.2357 0.99 2645 142 0.1315 0.1507 REMARK 3 3 4.2357 - 3.7005 1.00 2597 131 0.1427 0.1728 REMARK 3 4 3.7005 - 3.3623 1.00 2586 146 0.1673 0.2182 REMARK 3 5 3.3623 - 3.1214 1.00 2615 125 0.1795 0.2243 REMARK 3 6 3.1214 - 2.9374 0.99 2591 132 0.1864 0.2234 REMARK 3 7 2.9374 - 2.7903 1.00 2577 144 0.1881 0.2143 REMARK 3 8 2.7903 - 2.6688 0.99 2525 133 0.2046 0.2670 REMARK 3 9 2.6688 - 2.5661 0.99 2588 152 0.2113 0.2733 REMARK 3 10 2.5661 - 2.4775 0.99 2521 116 0.2150 0.2714 REMARK 3 11 2.4775 - 2.4001 0.99 2564 145 0.2271 0.2692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3036 REMARK 3 ANGLE : 1.134 4134 REMARK 3 CHIRALITY : 0.048 478 REMARK 3 PLANARITY : 0.005 522 REMARK 3 DIHEDRAL : 18.607 1086 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 161.5183 106.6873 8.6927 REMARK 3 T TENSOR REMARK 3 T11: 0.3424 T22: 0.3720 REMARK 3 T33: 0.3053 T12: -0.0812 REMARK 3 T13: 0.0748 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 2.5539 L22: 2.8254 REMARK 3 L33: 0.9898 L12: -1.0453 REMARK 3 L13: 0.9349 L23: 0.8683 REMARK 3 S TENSOR REMARK 3 S11: 0.1189 S12: -0.4790 S13: 0.1694 REMARK 3 S21: 0.5881 S22: -0.1139 S23: 0.2663 REMARK 3 S31: 0.1259 S32: -0.1649 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 169.0627 107.4809 10.6059 REMARK 3 T TENSOR REMARK 3 T11: 0.3271 T22: 0.2818 REMARK 3 T33: 0.3133 T12: -0.0417 REMARK 3 T13: -0.0275 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 3.5740 L22: 3.8003 REMARK 3 L33: 1.8030 L12: 1.7323 REMARK 3 L13: 1.0448 L23: -0.5016 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: -0.2810 S13: -0.1839 REMARK 3 S21: 0.5500 S22: -0.1609 S23: -0.3175 REMARK 3 S31: -0.1644 S32: -0.0520 S33: 0.2272 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 169.1783 103.4089 -4.8329 REMARK 3 T TENSOR REMARK 3 T11: 0.3386 T22: 0.5740 REMARK 3 T33: 0.4267 T12: -0.0262 REMARK 3 T13: 0.0159 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 1.1778 L22: 0.3396 REMARK 3 L33: 0.7154 L12: -0.3336 REMARK 3 L13: 0.8767 L23: -0.1193 REMARK 3 S TENSOR REMARK 3 S11: -0.0447 S12: 0.8201 S13: -0.1437 REMARK 3 S21: -0.3224 S22: 0.0452 S23: -0.2364 REMARK 3 S31: 0.2016 S32: 0.0556 S33: -0.0112 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 166.3248 116.1366 -4.3464 REMARK 3 T TENSOR REMARK 3 T11: 0.2976 T22: 0.3858 REMARK 3 T33: 0.2861 T12: 0.0186 REMARK 3 T13: -0.0158 T23: 0.0691 REMARK 3 L TENSOR REMARK 3 L11: 0.8926 L22: 2.3985 REMARK 3 L33: 2.6677 L12: -0.7439 REMARK 3 L13: -0.6943 L23: 0.0649 REMARK 3 S TENSOR REMARK 3 S11: 0.2203 S12: 0.3753 S13: 0.2575 REMARK 3 S21: -0.3322 S22: -0.2503 S23: 0.1181 REMARK 3 S31: 0.0441 S32: -0.3606 S33: 0.0273 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 164.5597 121.6122 5.4826 REMARK 3 T TENSOR REMARK 3 T11: 0.2988 T22: 0.2206 REMARK 3 T33: 0.3069 T12: 0.0187 REMARK 3 T13: 0.0128 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 1.1779 L22: 2.6913 REMARK 3 L33: 2.4143 L12: 0.1621 REMARK 3 L13: -0.0169 L23: -0.9235 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: 0.1368 S13: 0.3537 REMARK 3 S21: 0.3329 S22: -0.0405 S23: 0.1147 REMARK 3 S31: -0.4012 S32: -0.1728 S33: 0.0180 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 984 THROUGH 1011 ) REMARK 3 ORIGIN FOR THE GROUP (A): 153.8850 91.1480 13.5630 REMARK 3 T TENSOR REMARK 3 T11: 0.3027 T22: 0.4315 REMARK 3 T33: 0.2081 T12: -0.1037 REMARK 3 T13: -0.0102 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 2.7486 L22: 1.9681 REMARK 3 L33: 0.6966 L12: -0.9082 REMARK 3 L13: -1.2076 L23: 0.4279 REMARK 3 S TENSOR REMARK 3 S11: 0.2076 S12: -0.1075 S13: 0.5630 REMARK 3 S21: 0.1368 S22: -0.1043 S23: -0.0741 REMARK 3 S31: 0.0505 S32: -0.1008 S33: -0.0180 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1012 THROUGH 1076 ) REMARK 3 ORIGIN FOR THE GROUP (A): 161.6275 80.3664 7.6101 REMARK 3 T TENSOR REMARK 3 T11: 0.2893 T22: 0.3586 REMARK 3 T33: 0.2705 T12: -0.0794 REMARK 3 T13: -0.0429 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 2.6883 L22: 0.8150 REMARK 3 L33: 0.3810 L12: 0.3598 REMARK 3 L13: 0.3776 L23: 0.0234 REMARK 3 S TENSOR REMARK 3 S11: 0.1858 S12: -0.0965 S13: -0.3813 REMARK 3 S21: 0.1093 S22: -0.0794 S23: -0.2190 REMARK 3 S31: 0.1411 S32: -0.0104 S33: -0.0981 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1077 THROUGH 1094 ) REMARK 3 ORIGIN FOR THE GROUP (A): 163.7455 75.9084 -6.2452 REMARK 3 T TENSOR REMARK 3 T11: 0.3769 T22: 0.6042 REMARK 3 T33: 0.2832 T12: -0.0175 REMARK 3 T13: 0.0068 T23: -0.0798 REMARK 3 L TENSOR REMARK 3 L11: 3.8450 L22: 3.4987 REMARK 3 L33: 5.8541 L12: 0.9702 REMARK 3 L13: 1.0445 L23: -0.5169 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: 0.9967 S13: -0.3088 REMARK 3 S21: -0.8737 S22: 0.1222 S23: 0.0054 REMARK 3 S31: 0.0953 S32: -0.0661 S33: -0.1418 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1095 THROUGH 1149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 155.0585 81.2298 2.0938 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.3324 REMARK 3 T33: 0.1773 T12: -0.0847 REMARK 3 T13: -0.0148 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.6862 L22: 1.1571 REMARK 3 L33: 0.9797 L12: 0.7311 REMARK 3 L13: -0.3035 L23: 0.1201 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: 0.3001 S13: -0.0446 REMARK 3 S21: 0.0250 S22: -0.0046 S23: 0.0272 REMARK 3 S31: 0.1459 S32: -0.0923 S33: 0.0074 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1150 THROUGH 1178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 164.5672 87.0289 6.9908 REMARK 3 T TENSOR REMARK 3 T11: 0.2481 T22: 0.3542 REMARK 3 T33: 0.3239 T12: -0.0874 REMARK 3 T13: -0.0596 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.4290 L22: 1.4043 REMARK 3 L33: 1.2852 L12: -0.0497 REMARK 3 L13: -1.0061 L23: -0.1549 REMARK 3 S TENSOR REMARK 3 S11: 0.1392 S12: -0.0161 S13: 0.0902 REMARK 3 S21: 0.0158 S22: -0.1052 S23: -0.1362 REMARK 3 S31: 0.0140 S32: 0.0703 S33: -0.0049 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300009069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TW8, 4GIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, PEG 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.79000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.39500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.59250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 6.19750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.98750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -5 REMARK 465 PRO B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLU B -1 REMARK 465 PHE B 0 REMARK 465 GLN B 179 REMARK 465 GLN B 180 REMARK 465 GLY A 977 REMARK 465 PRO A 978 REMARK 465 GLY A 979 REMARK 465 SER A 980 REMARK 465 GLU A 981 REMARK 465 PHE A 982 REMARK 465 SER A 983 REMARK 465 LEU A 1179 REMARK 465 GLN A 1180 REMARK 465 SER A 1181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 1 CG SD CE REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 GLU A 984 CG CD OE1 OE2 REMARK 470 VAL A1059 CG1 CG2 REMARK 470 ILE A1060 CG1 CG2 CD1 REMARK 470 LYS A1065 CG CD CE NZ REMARK 470 LYS A1083 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS B 110 O HOH B 301 1.92 REMARK 500 O HOH B 380 O HOH B 405 1.93 REMARK 500 O HOH B 353 O HOH B 410 2.00 REMARK 500 O LEU A 1178 O HOH A 1201 2.02 REMARK 500 O HOH B 400 O HOH A 1285 2.05 REMARK 500 O HOH B 308 O HOH B 370 2.05 REMARK 500 O HOH B 311 O HOH B 389 2.07 REMARK 500 O HOH A 1217 O HOH A 1288 2.09 REMARK 500 O HOH B 381 O HOH B 406 2.09 REMARK 500 O GLU A 1097 O HOH A 1202 2.12 REMARK 500 O HOH B 402 O HOH B 404 2.13 REMARK 500 O HOH B 358 O HOH B 399 2.14 REMARK 500 O HOH B 374 O HOH B 395 2.14 REMARK 500 O HOH A 1267 O HOH A 1290 2.16 REMARK 500 NH2 ARG B 127 O HOH B 302 2.18 REMARK 500 O HOH B 390 O HOH B 397 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 90 -4.92 -59.11 REMARK 500 TYR A1039 -60.45 -106.80 REMARK 500 THR A1082 20.19 -148.66 REMARK 500 THR A1147 -69.82 -99.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1313 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 22 OG REMARK 620 2 THR B 40 OG1 81.8 REMARK 620 3 GTP B 202 O2G 170.5 92.1 REMARK 620 4 GTP B 202 O2B 86.6 168.1 99.1 REMARK 620 5 HOH B 312 O 82.5 96.3 91.0 79.5 REMARK 620 6 HOH B 322 O 97.1 95.6 90.7 88.4 167.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 202 DBREF 6IF2 B 1 180 UNP Q15286 RAB35_HUMAN 1 180 DBREF 6IF2 A 983 1181 UNP Q8N2Y8 RUSC2_HUMAN 983 1181 SEQADV 6IF2 GLY B -5 UNP Q15286 EXPRESSION TAG SEQADV 6IF2 PRO B -4 UNP Q15286 EXPRESSION TAG SEQADV 6IF2 GLY B -3 UNP Q15286 EXPRESSION TAG SEQADV 6IF2 SER B -2 UNP Q15286 EXPRESSION TAG SEQADV 6IF2 GLU B -1 UNP Q15286 EXPRESSION TAG SEQADV 6IF2 PHE B 0 UNP Q15286 EXPRESSION TAG SEQADV 6IF2 LEU B 67 UNP Q15286 GLN 67 ENGINEERED MUTATION SEQADV 6IF2 GLY A 977 UNP Q8N2Y8 EXPRESSION TAG SEQADV 6IF2 PRO A 978 UNP Q8N2Y8 EXPRESSION TAG SEQADV 6IF2 GLY A 979 UNP Q8N2Y8 EXPRESSION TAG SEQADV 6IF2 SER A 980 UNP Q8N2Y8 EXPRESSION TAG SEQADV 6IF2 GLU A 981 UNP Q8N2Y8 EXPRESSION TAG SEQADV 6IF2 PHE A 982 UNP Q8N2Y8 EXPRESSION TAG SEQRES 1 B 186 GLY PRO GLY SER GLU PHE MET ALA ARG ASP TYR ASP HIS SEQRES 2 B 186 LEU PHE LYS LEU LEU ILE ILE GLY ASP SER GLY VAL GLY SEQRES 3 B 186 LYS SER SER LEU LEU LEU ARG PHE ALA ASP ASN THR PHE SEQRES 4 B 186 SER GLY SER TYR ILE THR THR ILE GLY VAL ASP PHE LYS SEQRES 5 B 186 ILE ARG THR VAL GLU ILE ASN GLY GLU LYS VAL LYS LEU SEQRES 6 B 186 GLN ILE TRP ASP THR ALA GLY LEU GLU ARG PHE ARG THR SEQRES 7 B 186 ILE THR SER THR TYR TYR ARG GLY THR HIS GLY VAL ILE SEQRES 8 B 186 VAL VAL TYR ASP VAL THR SER ALA GLU SER PHE VAL ASN SEQRES 9 B 186 VAL LYS ARG TRP LEU HIS GLU ILE ASN GLN ASN CYS ASP SEQRES 10 B 186 ASP VAL CYS ARG ILE LEU VAL GLY ASN LYS ASN ASP ASP SEQRES 11 B 186 PRO GLU ARG LYS VAL VAL GLU THR GLU ASP ALA TYR LYS SEQRES 12 B 186 PHE ALA GLY GLN MET GLY ILE GLN LEU PHE GLU THR SER SEQRES 13 B 186 ALA LYS GLU ASN VAL ASN VAL GLU GLU MET PHE ASN CYS SEQRES 14 B 186 ILE THR GLU LEU VAL LEU ARG ALA LYS LYS ASP ASN LEU SEQRES 15 B 186 ALA LYS GLN GLN SEQRES 1 A 205 GLY PRO GLY SER GLU PHE SER GLU ALA ILE SER ILE ASP SEQRES 2 A 205 LEU LEU GLN LYS LYS GLY LEU VAL LYS ALA VAL ASN ILE SEQRES 3 A 205 ALA VAL ASP LEU ILE VAL ALA HIS PHE GLY THR SER ARG SEQRES 4 A 205 ASP PRO GLY VAL LYS ALA LYS LEU GLY ASN SER SER VAL SEQRES 5 A 205 SER PRO ASN VAL GLY HIS LEU VAL LEU LYS TYR LEU CYS SEQRES 6 A 205 PRO ALA VAL ARG ALA VAL LEU GLU ASP GLY LEU LYS ALA SEQRES 7 A 205 PHE VAL LEU ASP VAL ILE ILE GLY GLN ARG LYS ASN MET SEQRES 8 A 205 PRO TRP SER VAL VAL GLU ALA SER THR GLN LEU GLY PRO SEQRES 9 A 205 SER THR LYS VAL LEU HIS GLY LEU TYR ASN LYS VAL SER SEQRES 10 A 205 GLN PHE PRO GLU LEU THR SER HIS THR MET ARG PHE ASN SEQRES 11 A 205 ALA PHE ILE LEU GLY LEU LEU ASN ILE ARG SER LEU GLU SEQRES 12 A 205 PHE TRP PHE ASN HIS LEU TYR ASN HIS GLU ASP ILE ILE SEQRES 13 A 205 GLN THR HIS TYR GLN PRO TRP GLY PHE LEU SER ALA ALA SEQRES 14 A 205 HIS THR VAL CYS PRO GLY LEU PHE GLU GLU LEU LEU LEU SEQRES 15 A 205 LEU LEU GLN PRO LEU ALA LEU LEU PRO PHE SER LEU ASP SEQRES 16 A 205 LEU LEU PHE GLN HIS ARG LEU LEU GLN SER HET MG B 201 1 HET GTP B 202 32 HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 GTP C10 H16 N5 O14 P3 FORMUL 5 HOH *231(H2 O) HELIX 1 AA1 GLY B 20 ASN B 31 1 12 HELIX 2 AA2 LEU B 67 ARG B 71 5 5 HELIX 3 AA3 ILE B 73 ARG B 79 1 7 HELIX 4 AA4 SER B 92 ASN B 98 1 7 HELIX 5 AA5 ASN B 98 CYS B 110 1 13 HELIX 6 AA6 ASP B 124 LYS B 128 5 5 HELIX 7 AA7 GLU B 131 MET B 142 1 12 HELIX 8 AA8 ASN B 156 LYS B 178 1 23 HELIX 9 AA9 ASP A 989 PHE A 1011 1 23 HELIX 10 AB1 ASP A 1016 GLY A 1024 1 9 HELIX 11 AB2 SER A 1029 TYR A 1039 1 11 HELIX 12 AB3 TYR A 1039 ASP A 1050 1 12 HELIX 13 AB4 MET A 1067 SER A 1075 1 9 HELIX 14 AB5 THR A 1082 PHE A 1095 1 14 HELIX 15 AB6 SER A 1100 ILE A 1115 1 16 HELIX 16 AB7 SER A 1117 ASN A 1127 1 11 HELIX 17 AB8 HIS A 1128 TYR A 1136 1 9 HELIX 18 AB9 GLY A 1140 VAL A 1148 1 9 HELIX 19 AC1 CYS A 1149 GLN A 1161 1 13 HELIX 20 AC2 PRO A 1162 LEU A 1166 5 5 HELIX 21 AC3 LEU A 1173 LEU A 1178 1 6 SHEET 1 AA1 6 VAL B 43 ILE B 52 0 SHEET 2 AA1 6 GLU B 55 THR B 64 -1 O LEU B 59 N ARG B 48 SHEET 3 AA1 6 HIS B 7 GLY B 15 1 N LEU B 11 O TRP B 62 SHEET 4 AA1 6 GLY B 83 ASP B 89 1 O ILE B 85 N LEU B 12 SHEET 5 AA1 6 CYS B 114 ASN B 120 1 O VAL B 118 N VAL B 86 SHEET 6 AA1 6 GLN B 145 GLU B 148 1 O PHE B 147 N GLY B 119 SHEET 1 AA2 2 PHE A1055 ASP A1058 0 SHEET 2 AA2 2 GLY A1062 LYS A1065 -1 O GLY A1062 N ASP A1058 LINK OG SER B 22 MG MG B 201 1555 1555 2.12 LINK OG1 THR B 40 MG MG B 201 1555 1555 2.20 LINK MG MG B 201 O2G GTP B 202 1555 1555 1.99 LINK MG MG B 201 O2B GTP B 202 1555 1555 2.04 LINK MG MG B 201 O HOH B 312 1555 1555 2.05 LINK MG MG B 201 O HOH B 322 1555 1555 2.07 SITE 1 AC1 5 SER B 22 THR B 40 GTP B 202 HOH B 312 SITE 2 AC1 5 HOH B 322 SITE 1 AC2 27 SER B 17 GLY B 18 VAL B 19 GLY B 20 SITE 2 AC2 27 LYS B 21 SER B 22 SER B 23 PHE B 33 SITE 3 AC2 27 SER B 34 GLY B 35 SER B 36 TYR B 37 SITE 4 AC2 27 THR B 39 THR B 40 GLY B 66 ARG B 69 SITE 5 AC2 27 PHE B 70 ASN B 120 LYS B 121 ASP B 123 SITE 6 AC2 27 ALA B 151 LYS B 152 MG B 201 HOH B 312 SITE 7 AC2 27 HOH B 322 HOH B 340 HOH B 371 CRYST1 188.213 188.213 37.185 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005313 0.003068 0.000000 0.00000 SCALE2 0.000000 0.006135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026893 0.00000