HEADER HYDROLASE 20-SEP-18 6IFQ TITLE CRYSTAL STRUCTURE OF A STANDALONE VERSATILE EAL PROTEIN FROM VIBRIO TITLE 2 CHOLERAE O395 - APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC DI NUCLEOTIDE PHOSHODIESTERASE; COMPND 3 CHAIN: B, A; COMPND 4 EC: 3.1.4.52; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 GENE: VC0395_A1247; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYCLIC DINUCLEOTIDE PHOSPHODIESTERASE, NUCLEOTIDE BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.YADAV,K.PAL,U.SEN REVDAT 3 27-MAR-24 6IFQ 1 LINK REVDAT 2 22-JAN-20 6IFQ 1 JRNL REVDAT 1 02-OCT-19 6IFQ 0 JRNL AUTH M.YADAV,K.PAL,U.SEN JRNL TITL STRUCTURES OF C-DI-GMP/CGAMP DEGRADING PHOSPHODIESTERASE JRNL TITL 2 VCEAL: IDENTIFICATION OF A NOVEL CONFORMATIONAL SWITCH AND JRNL TITL 3 ITS IMPLICATION. JRNL REF BIOCHEM.J. V. 476 3333 2019 JRNL REFN ESSN 1470-8728 JRNL PMID 31647518 JRNL DOI 10.1042/BCJ20190399 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 35358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.6062 - 4.5842 0.97 2699 116 0.1786 0.2528 REMARK 3 2 4.5842 - 3.6389 0.99 2640 156 0.1755 0.2210 REMARK 3 3 3.6389 - 3.1790 0.94 2465 147 0.2013 0.2506 REMARK 3 4 3.1790 - 2.8883 0.98 2579 144 0.2302 0.2448 REMARK 3 5 2.8883 - 2.6813 0.98 2610 123 0.2299 0.2734 REMARK 3 6 2.6813 - 2.5232 0.98 2569 141 0.2334 0.2917 REMARK 3 7 2.5232 - 2.3969 0.98 2592 133 0.2386 0.2797 REMARK 3 8 2.3969 - 2.2925 0.98 2557 150 0.2374 0.3275 REMARK 3 9 2.2925 - 2.2043 0.98 2577 152 0.2402 0.2622 REMARK 3 10 2.2043 - 2.1282 0.98 2554 142 0.2608 0.2789 REMARK 3 11 2.1282 - 2.0617 0.99 2584 152 0.2836 0.3246 REMARK 3 12 2.0617 - 2.0027 0.98 2568 132 0.3016 0.3443 REMARK 3 13 2.0027 - 1.9500 0.98 2546 130 0.3235 0.3920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3876 REMARK 3 ANGLE : 0.950 5226 REMARK 3 CHIRALITY : 0.044 574 REMARK 3 PLANARITY : 0.004 682 REMARK 3 DIHEDRAL : 14.977 1428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1530 -2.2888 10.4113 REMARK 3 T TENSOR REMARK 3 T11: 0.6331 T22: 1.1491 REMARK 3 T33: 0.5554 T12: -0.3640 REMARK 3 T13: 0.0678 T23: -0.0911 REMARK 3 L TENSOR REMARK 3 L11: 7.0999 L22: 2.8718 REMARK 3 L33: 3.2141 L12: 0.0258 REMARK 3 L13: 1.8757 L23: -0.3136 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.2390 S13: 0.0846 REMARK 3 S21: -0.3463 S22: 0.0582 S23: -0.7787 REMARK 3 S31: -0.5310 S32: 1.5709 S33: -0.0822 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9955 -11.3452 13.7851 REMARK 3 T TENSOR REMARK 3 T11: 0.4252 T22: 1.2017 REMARK 3 T33: 0.5973 T12: -0.0477 REMARK 3 T13: -0.0343 T23: -0.1193 REMARK 3 L TENSOR REMARK 3 L11: 5.5292 L22: 2.9610 REMARK 3 L33: 5.6265 L12: 1.8060 REMARK 3 L13: 2.5541 L23: -2.4151 REMARK 3 S TENSOR REMARK 3 S11: -0.1623 S12: 0.4172 S13: -0.4305 REMARK 3 S21: -0.3691 S22: 0.2979 S23: -0.7105 REMARK 3 S31: 0.4941 S32: 1.8415 S33: -0.2171 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5104 -17.3123 10.6831 REMARK 3 T TENSOR REMARK 3 T11: 0.5925 T22: 0.8336 REMARK 3 T33: 0.5871 T12: 0.2376 REMARK 3 T13: -0.0004 T23: 0.0978 REMARK 3 L TENSOR REMARK 3 L11: 6.1061 L22: 8.3899 REMARK 3 L33: 3.6907 L12: 1.8726 REMARK 3 L13: 1.7254 L23: 0.2403 REMARK 3 S TENSOR REMARK 3 S11: 0.1211 S12: -0.1707 S13: -0.5968 REMARK 3 S21: -0.3487 S22: -0.1831 S23: -0.8610 REMARK 3 S31: 0.9635 S32: 1.2601 S33: -0.0167 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0873 -5.0286 0.1896 REMARK 3 T TENSOR REMARK 3 T11: 0.4703 T22: 0.3238 REMARK 3 T33: 0.3214 T12: -0.1091 REMARK 3 T13: -0.0081 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.4874 L22: 4.1056 REMARK 3 L33: 8.0806 L12: -2.0572 REMARK 3 L13: 0.7432 L23: 1.4083 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: 0.0079 S13: 0.0254 REMARK 3 S21: -0.4176 S22: -0.1952 S23: -0.0365 REMARK 3 S31: -0.5802 S32: 0.2605 S33: 0.0396 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0916 8.1958 14.6548 REMARK 3 T TENSOR REMARK 3 T11: 1.1176 T22: 0.6566 REMARK 3 T33: 0.7240 T12: -0.4317 REMARK 3 T13: -0.0041 T23: -0.4602 REMARK 3 L TENSOR REMARK 3 L11: 8.8453 L22: 6.1952 REMARK 3 L33: 4.2933 L12: 2.3428 REMARK 3 L13: 3.8459 L23: -0.2098 REMARK 3 S TENSOR REMARK 3 S11: -0.6715 S12: -0.3068 S13: 1.3775 REMARK 3 S21: 0.3479 S22: 0.1350 S23: 0.7046 REMARK 3 S31: -1.4916 S32: 0.4704 S33: 0.8600 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2871 -18.4227 -32.2607 REMARK 3 T TENSOR REMARK 3 T11: 0.6392 T22: 0.9873 REMARK 3 T33: 0.5484 T12: 0.2307 REMARK 3 T13: -0.0744 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 8.2039 L22: 4.2677 REMARK 3 L33: 6.4614 L12: 2.1445 REMARK 3 L13: 0.1680 L23: -1.7445 REMARK 3 S TENSOR REMARK 3 S11: 0.1150 S12: 0.1578 S13: -0.3376 REMARK 3 S21: 0.0895 S22: -0.3512 S23: -0.9663 REMARK 3 S31: 0.9721 S32: 1.5097 S33: 0.0749 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1923 -14.3313 -23.8052 REMARK 3 T TENSOR REMARK 3 T11: 0.5099 T22: 0.3773 REMARK 3 T33: 0.3607 T12: 0.0366 REMARK 3 T13: -0.0713 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.0586 L22: 1.4737 REMARK 3 L33: 8.5441 L12: 0.6035 REMARK 3 L13: -1.0173 L23: 0.3647 REMARK 3 S TENSOR REMARK 3 S11: 0.0751 S12: 0.1808 S13: -0.0335 REMARK 3 S21: 0.0510 S22: 0.0295 S23: -0.1577 REMARK 3 S31: 0.3330 S32: 0.5692 S33: -0.1234 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4-8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35579 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 78.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CITRATE, AMMONIUM REMARK 280 ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.85050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.40600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.85050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.40600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 ILE B 3 REMARK 465 ILE B 4 REMARK 465 PRO B 5 REMARK 465 VAL B 6 REMARK 465 ALA B 7 REMARK 465 SER B 8 REMARK 465 ASP B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 THR B 12 REMARK 465 CYS B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 GLY B 16 REMARK 465 VAL B 17 REMARK 465 ASN B 18 REMARK 465 GLU B 19 REMARK 465 ASN B 20 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 ILE A 3 REMARK 465 ILE A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 PRO A 10 REMARK 465 LYS A 11 REMARK 465 THR A 12 REMARK 465 CYS A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 VAL A 17 REMARK 465 ASN A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 22 -109.30 -136.48 REMARK 500 ASN B 52 -21.23 -144.48 REMARK 500 SER B 90 -153.18 -105.66 REMARK 500 ASN B 99 71.18 -64.47 REMARK 500 ILE B 101 -142.93 -163.60 REMARK 500 TYR B 102 -171.18 63.30 REMARK 500 GLU B 105 30.86 -81.53 REMARK 500 ARG B 106 -24.46 -161.05 REMARK 500 GLU B 136 -10.31 69.80 REMARK 500 ASP B 137 73.54 56.04 REMARK 500 VAL B 138 -55.82 55.90 REMARK 500 ALA B 240 138.81 -170.14 REMARK 500 ASN B 251 112.44 -27.86 REMARK 500 LEU A 22 -147.96 -135.73 REMARK 500 ASP A 23 -125.40 -84.98 REMARK 500 PHE A 24 150.58 -39.58 REMARK 500 ASN A 52 105.81 -47.82 REMARK 500 ASN A 53 14.49 -46.27 REMARK 500 GLU A 54 39.19 177.12 REMARK 500 TYR A 57 -40.74 66.60 REMARK 500 SER A 90 -153.08 -113.75 REMARK 500 PRO A 98 40.34 -50.98 REMARK 500 GLU A 105 65.01 -60.28 REMARK 500 ARG A 106 -18.57 -166.05 REMARK 500 THR A 130 -121.12 -94.38 REMARK 500 GLU A 131 84.18 -61.54 REMARK 500 ARG A 134 171.10 59.94 REMARK 500 VAL A 135 59.19 -69.78 REMARK 500 GLU A 136 62.36 -33.43 REMARK 500 VAL A 138 -55.84 25.84 REMARK 500 SER A 162 -66.95 -124.09 REMARK 500 SER A 165 93.47 -69.98 REMARK 500 ALA A 240 141.54 -171.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 45 OE2 REMARK 620 2 ASN B 95 OD1 81.9 REMARK 620 3 GLU B 128 OE2 95.7 106.5 REMARK 620 4 ASP B 158 OD2 167.7 103.9 93.0 REMARK 620 5 HOH B 416 O 85.5 164.8 82.9 87.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 45 OE2 REMARK 620 2 ASN A 95 OD1 81.8 REMARK 620 3 GLU A 128 OE2 96.8 90.0 REMARK 620 4 ASP A 158 OD2 172.4 94.3 89.7 REMARK 620 5 HOH A 607 O 98.7 170.8 99.1 84.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 DBREF1 6IFQ B 1 257 UNP A0A0H3AJ04_VIBC3 DBREF2 6IFQ B A0A0H3AJ04 1 257 DBREF1 6IFQ A 1 257 UNP A0A0H3AJ04_VIBC3 DBREF2 6IFQ A A0A0H3AJ04 1 257 SEQADV 6IFQ SER B 15 UNP A0A0H3AJ0 CYS 15 ENGINEERED MUTATION SEQADV 6IFQ SER A 15 UNP A0A0H3AJ0 CYS 15 ENGINEERED MUTATION SEQRES 1 B 257 MET HIS ILE ILE PRO VAL ALA SER ASP PRO LYS THR CYS SEQRES 2 B 257 SER SER GLY VAL ASN GLU ASN SER LEU ASP PHE ASP PHE SEQRES 3 B 257 THR MET ALA PHE GLN PRO ILE VAL ASN CYS ARG THR LYS SEQRES 4 B 257 GLU ILE PHE GLY TYR GLU ALA LEU VAL ARG GLY LEU ASN SEQRES 5 B 257 ASN GLU SER ALA TYR SER VAL ILE SER ARG VAL ASN GLU SEQRES 6 B 257 ASP ASN ARG TYR LEU PHE ASP GLN MET CYS ARG VAL LYS SEQRES 7 B 257 ALA ILE ALA LEU ALA ALA LYS LEU GLY LEU THR SER LYS SEQRES 8 B 257 LEU SER ILE ASN PHE LEU PRO ASN ALA ILE TYR VAL PRO SEQRES 9 B 257 GLU ARG CYS ILE ARG THR THR LEU GLU ALA ALA LYS ARG SEQRES 10 B 257 TYR GLN PHE PRO ILE GLU ASN ILE MET PHE GLU PHE THR SEQRES 11 B 257 GLU ALA GLU ARG VAL GLU ASP VAL ASN HIS ILE LYS ARG SEQRES 12 B 257 ILE VAL GLU TYR TYR LYS SER LEU GLY PHE GLN THR ALA SEQRES 13 B 257 ILE ASP ASP PHE GLY SER GLY TYR SER GLY LEU ASN LEU SEQRES 14 B 257 LEU ALA ASP PHE GLN THR ASN ILE VAL LYS VAL ASP MET SEQRES 15 B 257 GLY LEU ILE ARG ASN ILE HIS ALA ASP GLN VAL ARG GLN SEQRES 16 B 257 SER ILE MET LYS ASN CYS LEU LYS LEU PHE SER ASP LEU SEQRES 17 B 257 ASN ILE GLN PRO LEU ALA GLU GLY VAL GLU SER HIS ALA SEQRES 18 B 257 GLU PHE ALA TRP LEU LYS ALA ALA GLY VAL GLU LEU MET SEQRES 19 B 257 GLN GLY TYR TYR PHE ALA LYS PRO GLY PHE GLU SER LEU SEQRES 20 B 257 PRO SER VAL ASN PRO GLU PHE SER GLU ALA SEQRES 1 A 257 MET HIS ILE ILE PRO VAL ALA SER ASP PRO LYS THR CYS SEQRES 2 A 257 SER SER GLY VAL ASN GLU ASN SER LEU ASP PHE ASP PHE SEQRES 3 A 257 THR MET ALA PHE GLN PRO ILE VAL ASN CYS ARG THR LYS SEQRES 4 A 257 GLU ILE PHE GLY TYR GLU ALA LEU VAL ARG GLY LEU ASN SEQRES 5 A 257 ASN GLU SER ALA TYR SER VAL ILE SER ARG VAL ASN GLU SEQRES 6 A 257 ASP ASN ARG TYR LEU PHE ASP GLN MET CYS ARG VAL LYS SEQRES 7 A 257 ALA ILE ALA LEU ALA ALA LYS LEU GLY LEU THR SER LYS SEQRES 8 A 257 LEU SER ILE ASN PHE LEU PRO ASN ALA ILE TYR VAL PRO SEQRES 9 A 257 GLU ARG CYS ILE ARG THR THR LEU GLU ALA ALA LYS ARG SEQRES 10 A 257 TYR GLN PHE PRO ILE GLU ASN ILE MET PHE GLU PHE THR SEQRES 11 A 257 GLU ALA GLU ARG VAL GLU ASP VAL ASN HIS ILE LYS ARG SEQRES 12 A 257 ILE VAL GLU TYR TYR LYS SER LEU GLY PHE GLN THR ALA SEQRES 13 A 257 ILE ASP ASP PHE GLY SER GLY TYR SER GLY LEU ASN LEU SEQRES 14 A 257 LEU ALA ASP PHE GLN THR ASN ILE VAL LYS VAL ASP MET SEQRES 15 A 257 GLY LEU ILE ARG ASN ILE HIS ALA ASP GLN VAL ARG GLN SEQRES 16 A 257 SER ILE MET LYS ASN CYS LEU LYS LEU PHE SER ASP LEU SEQRES 17 A 257 ASN ILE GLN PRO LEU ALA GLU GLY VAL GLU SER HIS ALA SEQRES 18 A 257 GLU PHE ALA TRP LEU LYS ALA ALA GLY VAL GLU LEU MET SEQRES 19 A 257 GLN GLY TYR TYR PHE ALA LYS PRO GLY PHE GLU SER LEU SEQRES 20 A 257 PRO SER VAL ASN PRO GLU PHE SER GLU ALA HET CA B 301 1 HET CA A 501 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *52(H2 O) HELIX 1 AA1 SER B 55 SER B 61 1 7 HELIX 2 AA2 ARG B 62 VAL B 63 5 2 HELIX 3 AA3 ASN B 64 ASP B 66 5 3 HELIX 4 AA4 ASN B 67 GLY B 87 1 21 HELIX 5 AA5 VAL B 103 ILE B 108 1 6 HELIX 6 AA6 ILE B 108 TYR B 118 1 11 HELIX 7 AA7 PRO B 121 GLU B 123 5 3 HELIX 8 AA8 VAL B 138 LEU B 151 1 14 HELIX 9 AA9 GLY B 166 PHE B 173 1 8 HELIX 10 AB1 ASP B 181 ARG B 186 1 6 HELIX 11 AB2 ASN B 187 ALA B 190 5 4 HELIX 12 AB3 ASP B 191 LEU B 208 1 18 HELIX 13 AB4 SER B 219 GLY B 230 1 12 HELIX 14 AB5 ASN B 251 GLU B 256 1 6 HELIX 15 AB6 TYR A 57 ARG A 62 1 6 HELIX 16 AB7 ASN A 67 LEU A 86 1 20 HELIX 17 AB8 ILE A 108 TYR A 118 1 11 HELIX 18 AB9 PRO A 121 GLU A 123 5 3 HELIX 19 AC1 VAL A 138 LEU A 151 1 14 HELIX 20 AC2 GLY A 166 PHE A 173 1 8 HELIX 21 AC3 ASP A 181 ARG A 186 1 6 HELIX 22 AC4 ASN A 187 ALA A 190 5 4 HELIX 23 AC5 ASP A 191 LEU A 208 1 18 HELIX 24 AC6 SER A 219 ALA A 229 1 11 HELIX 25 AC7 ASN A 251 GLU A 256 5 6 SHEET 1 AA110 GLY B 243 PHE B 244 0 SHEET 2 AA110 THR B 27 ASN B 35 -1 N PHE B 30 O GLY B 243 SHEET 3 AA110 LEU B 233 GLN B 235 -1 O MET B 234 N VAL B 34 SHEET 4 AA110 GLN B 211 ALA B 214 1 N ALA B 214 O GLN B 235 SHEET 5 AA110 ILE B 177 VAL B 180 1 N VAL B 178 O GLN B 211 SHEET 6 AA110 GLN B 154 PHE B 160 1 N ILE B 157 O LYS B 179 SHEET 7 AA110 ILE B 125 PHE B 129 1 N PHE B 129 O ALA B 156 SHEET 8 AA110 LYS B 91 PHE B 96 1 N ILE B 94 O MET B 126 SHEET 9 AA110 GLU B 40 ARG B 49 1 N ALA B 46 O SER B 93 SHEET 10 AA110 THR B 27 ASN B 35 -1 N ILE B 33 O GLY B 43 SHEET 1 AA210 GLY A 243 PHE A 244 0 SHEET 2 AA210 THR A 27 ASN A 35 -1 N PHE A 30 O GLY A 243 SHEET 3 AA210 LEU A 233 MET A 234 -1 O MET A 234 N VAL A 34 SHEET 4 AA210 GLN A 211 ALA A 214 1 N ALA A 214 O LEU A 233 SHEET 5 AA210 ILE A 177 VAL A 180 1 N VAL A 180 O LEU A 213 SHEET 6 AA210 GLN A 154 PHE A 160 1 N ILE A 157 O LYS A 179 SHEET 7 AA210 ILE A 125 PHE A 129 1 N PHE A 129 O ALA A 156 SHEET 8 AA210 LYS A 91 PHE A 96 1 N ILE A 94 O MET A 126 SHEET 9 AA210 GLU A 40 ARG A 49 1 N TYR A 44 O SER A 93 SHEET 10 AA210 THR A 27 ASN A 35 -1 N THR A 27 O ARG A 49 LINK OE2 GLU B 45 CA CA B 301 1555 1555 2.42 LINK OD1 ASN B 95 CA CA B 301 1555 1555 2.23 LINK OE2 GLU B 128 CA CA B 301 1555 1555 2.28 LINK OD2 ASP B 158 CA CA B 301 1555 1555 2.38 LINK CA CA B 301 O HOH B 416 1555 1555 2.25 LINK OE2 GLU A 45 CA CA A 501 1555 1555 2.46 LINK OD1 ASN A 95 CA CA A 501 1555 1555 2.29 LINK OE2 GLU A 128 CA CA A 501 1555 1555 2.29 LINK OD2 ASP A 158 CA CA A 501 1555 1555 2.36 LINK CA CA A 501 O HOH A 607 1555 1555 1.99 SITE 1 AC1 5 GLU B 45 ASN B 95 GLU B 128 ASP B 158 SITE 2 AC1 5 HOH B 416 SITE 1 AC2 5 GLU A 45 ASN A 95 GLU A 128 ASP A 158 SITE 2 AC2 5 HOH A 607 CRYST1 157.701 42.812 73.573 90.00 94.61 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006341 0.000000 0.000512 0.00000 SCALE2 0.000000 0.023358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013636 0.00000