HEADER TRANSFERASE 21-SEP-18 6IFV TITLE C-TERMINAL TRUNCATED KSGA FROM BACILLUS SUBTILIS 168 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL TRUNCATED; COMPND 5 SYNONYM: 16S RRNA (ADENINE(1518)-N(6)/ADENINE(1519)-N(6))- COMPND 6 DIMETHYLTRANSFERASE,16S RRNA DIMETHYLADENOSINE TRANSFERASE,16S RRNA COMPND 7 DIMETHYLASE,S-ADENOSYLMETHIONINE-6-N',N'-ADENOSYL(RRNA) COMPND 8 DIMETHYLTRANSFERASE; COMPND 9 EC: 2.1.1.182; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: RSMA, KSGA, BSU00420; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KSGA, RESISTANCE, ROSSMANN FOLD, TRUNCATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.BHUJBALRAO,R.ANAND REVDAT 3 27-MAR-24 6IFV 1 REMARK REVDAT 2 13-FEB-19 6IFV 1 JRNL REVDAT 1 30-JAN-19 6IFV 0 JRNL AUTH R.BHUJBALRAO,R.ANAND JRNL TITL DECIPHERING DETERMINANTS IN RIBOSOMAL METHYLTRANSFERASES JRNL TITL 2 THAT CONFER ANTIMICROBIAL RESISTANCE. JRNL REF J. AM. CHEM. SOC. V. 141 1425 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 30624914 JRNL DOI 10.1021/JACS.8B10277 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 7311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 12.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 500 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3058 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.579 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.457 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.012 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3105 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2992 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4245 ; 1.552 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6890 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 6.873 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;30.302 ;25.321 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;15.014 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.720 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3394 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 545 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1636 ; 3.716 ; 5.749 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1635 ; 3.717 ; 5.749 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2038 ; 5.978 ; 8.613 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2039 ; 5.977 ; 8.613 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1468 ; 3.315 ; 5.922 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1469 ; 3.313 ; 5.922 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2208 ; 5.408 ; 8.812 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3188 ; 8.236 ;68.554 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3188 ; 8.231 ;68.544 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 211 B 4 211 11342 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6IFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8452 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17800 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.72700 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXOGONAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES SODIUM PH 7.5, 1.4M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.81900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.93350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.93350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.90950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.93350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.93350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.72850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.93350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.93350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.90950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.93350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.93350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.72850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.81900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 23 REMARK 465 LYS A 24 REMARK 465 SER A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 ASP A 212 REMARK 465 GLY A 213 REMARK 465 PRO A 214 REMARK 465 ALA A 215 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 26 REMARK 465 GLY B 27 REMARK 465 ASP B 212 REMARK 465 GLY B 213 REMARK 465 PRO B 214 REMARK 465 ALA B 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 GLN A 80 CG CD OE1 NE2 REMARK 470 ARG A 81 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 TYR A 130 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 131 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 ASN B 35 CG OD1 ND2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 GLN B 80 CG CD OE1 NE2 REMARK 470 ARG B 81 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 PHE B 116 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 117 CG CD OE1 NE2 REMARK 470 ASP B 118 CG OD1 OD2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 35 CD ARG A 39 7555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 92 -4.45 -57.51 REMARK 500 LYS B 23 -134.19 -83.05 REMARK 500 LYS B 24 61.93 -155.32 REMARK 500 PRO B 92 -3.95 -57.93 REMARK 500 ASP B 118 44.75 -104.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 6IFV A 1 215 UNP P37468 RSMA_BACSU 1 215 DBREF 6IFV B 1 215 UNP P37468 RSMA_BACSU 1 215 SEQRES 1 A 215 MET ASN LYS ASP ILE ALA THR PRO ILE ARG THR LYS GLU SEQRES 2 A 215 ILE LEU LYS LYS TYR GLY PHE SER PHE LYS LYS SER LEU SEQRES 3 A 215 GLY GLN ASN PHE LEU ILE ASP THR ASN ILE LEU ASN ARG SEQRES 4 A 215 ILE VAL ASP HIS ALA GLU VAL THR GLU LYS THR GLY VAL SEQRES 5 A 215 ILE GLU ILE GLY PRO GLY ILE GLY ALA LEU THR GLU GLN SEQRES 6 A 215 LEU ALA LYS ARG ALA LYS LYS VAL VAL ALA PHE GLU ILE SEQRES 7 A 215 ASP GLN ARG LEU LEU PRO ILE LEU LYS ASP THR LEU SER SEQRES 8 A 215 PRO TYR GLU ASN VAL THR VAL ILE HIS GLN ASP VAL LEU SEQRES 9 A 215 LYS ALA ASP VAL LYS SER VAL ILE GLU GLU GLN PHE GLN SEQRES 10 A 215 ASP CYS ASP GLU ILE MET VAL VAL ALA ASN LEU PRO TYR SEQRES 11 A 215 TYR VAL THR THR PRO ILE ILE MET LYS LEU LEU GLU GLU SEQRES 12 A 215 HIS LEU PRO LEU LYS GLY ILE VAL VAL MET LEU GLN LYS SEQRES 13 A 215 GLU VAL ALA GLU ARG MET ALA ALA ASP PRO SER SER LYS SEQRES 14 A 215 GLU TYR GLY SER LEU SER ILE ALA VAL GLN PHE TYR THR SEQRES 15 A 215 GLU ALA LYS THR VAL MET ILE VAL PRO LYS THR VAL PHE SEQRES 16 A 215 VAL PRO GLN PRO ASN VAL ASP SER ALA VAL ILE ARG LEU SEQRES 17 A 215 ILE LEU ARG ASP GLY PRO ALA SEQRES 1 B 215 MET ASN LYS ASP ILE ALA THR PRO ILE ARG THR LYS GLU SEQRES 2 B 215 ILE LEU LYS LYS TYR GLY PHE SER PHE LYS LYS SER LEU SEQRES 3 B 215 GLY GLN ASN PHE LEU ILE ASP THR ASN ILE LEU ASN ARG SEQRES 4 B 215 ILE VAL ASP HIS ALA GLU VAL THR GLU LYS THR GLY VAL SEQRES 5 B 215 ILE GLU ILE GLY PRO GLY ILE GLY ALA LEU THR GLU GLN SEQRES 6 B 215 LEU ALA LYS ARG ALA LYS LYS VAL VAL ALA PHE GLU ILE SEQRES 7 B 215 ASP GLN ARG LEU LEU PRO ILE LEU LYS ASP THR LEU SER SEQRES 8 B 215 PRO TYR GLU ASN VAL THR VAL ILE HIS GLN ASP VAL LEU SEQRES 9 B 215 LYS ALA ASP VAL LYS SER VAL ILE GLU GLU GLN PHE GLN SEQRES 10 B 215 ASP CYS ASP GLU ILE MET VAL VAL ALA ASN LEU PRO TYR SEQRES 11 B 215 TYR VAL THR THR PRO ILE ILE MET LYS LEU LEU GLU GLU SEQRES 12 B 215 HIS LEU PRO LEU LYS GLY ILE VAL VAL MET LEU GLN LYS SEQRES 13 B 215 GLU VAL ALA GLU ARG MET ALA ALA ASP PRO SER SER LYS SEQRES 14 B 215 GLU TYR GLY SER LEU SER ILE ALA VAL GLN PHE TYR THR SEQRES 15 B 215 GLU ALA LYS THR VAL MET ILE VAL PRO LYS THR VAL PHE SEQRES 16 B 215 VAL PRO GLN PRO ASN VAL ASP SER ALA VAL ILE ARG LEU SEQRES 17 B 215 ILE LEU ARG ASP GLY PRO ALA FORMUL 3 HOH *10(H2 O) HELIX 1 AA1 THR A 7 TYR A 18 1 12 HELIX 2 AA2 ASP A 33 ALA A 44 1 12 HELIX 3 AA3 GLY A 60 ALA A 70 1 11 HELIX 4 AA4 ASP A 79 ARG A 81 5 3 HELIX 5 AA5 LEU A 82 LEU A 90 1 9 HELIX 6 AA6 ASP A 107 PHE A 116 1 10 HELIX 7 AA7 PRO A 129 TYR A 131 5 3 HELIX 8 AA8 VAL A 132 GLU A 143 1 12 HELIX 9 AA9 LYS A 156 ALA A 163 1 8 HELIX 10 AB1 GLY A 172 TYR A 181 1 10 HELIX 11 AB2 PRO A 191 THR A 193 5 3 HELIX 12 AB3 THR B 7 TYR B 18 1 12 HELIX 13 AB4 ASP B 33 ALA B 44 1 12 HELIX 14 AB5 GLY B 60 ALA B 70 1 11 HELIX 15 AB6 ASP B 79 ARG B 81 5 3 HELIX 16 AB7 LEU B 82 LEU B 90 1 9 HELIX 17 AB8 ASP B 107 PHE B 116 1 10 HELIX 18 AB9 PRO B 129 GLU B 143 1 15 HELIX 19 AC1 LYS B 156 ALA B 163 1 8 HELIX 20 AC2 GLY B 172 TYR B 181 1 10 HELIX 21 AC3 PRO B 191 THR B 193 5 3 SHEET 1 AA1 2 PHE A 30 LEU A 31 0 SHEET 2 AA1 2 PHE A 195 VAL A 196 -1 O VAL A 196 N PHE A 30 SHEET 1 AA2 7 VAL A 96 ILE A 99 0 SHEET 2 AA2 7 LYS A 72 PHE A 76 1 N ALA A 75 O THR A 97 SHEET 3 AA2 7 THR A 50 ILE A 55 1 N VAL A 52 O VAL A 74 SHEET 4 AA2 7 GLU A 121 ASN A 127 1 O MET A 123 N GLY A 51 SHEET 5 AA2 7 GLY A 149 GLN A 155 1 O VAL A 151 N VAL A 124 SHEET 6 AA2 7 SER A 203 LEU A 210 -1 O LEU A 208 N ILE A 150 SHEET 7 AA2 7 THR A 182 VAL A 190 -1 N VAL A 187 O VAL A 205 SHEET 1 AA3 2 PHE B 30 LEU B 31 0 SHEET 2 AA3 2 PHE B 195 VAL B 196 -1 O VAL B 196 N PHE B 30 SHEET 1 AA4 7 VAL B 96 ILE B 99 0 SHEET 2 AA4 7 LYS B 72 PHE B 76 1 N ALA B 75 O THR B 97 SHEET 3 AA4 7 THR B 50 ILE B 55 1 N VAL B 52 O VAL B 74 SHEET 4 AA4 7 GLU B 121 ASN B 127 1 O MET B 123 N GLY B 51 SHEET 5 AA4 7 GLY B 149 GLN B 155 1 O VAL B 151 N VAL B 124 SHEET 6 AA4 7 SER B 203 LEU B 210 -1 O LEU B 208 N ILE B 150 SHEET 7 AA4 7 THR B 182 VAL B 190 -1 N LYS B 185 O ARG B 207 CISPEP 1 VAL A 196 PRO A 197 0 -8.60 CISPEP 2 VAL B 196 PRO B 197 0 -10.11 CRYST1 77.867 77.867 143.638 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006962 0.00000