HEADER OXIDOREDUCTASE 29-SEP-18 6IHE TITLE CRYSTAL STRUCTURE OF MALATE DEHYDROGENASE FROM METALLOSPHAERA SEDULA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE (NAD); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-304; COMPND 5 EC: 1.1.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METALLOSPHAERA SEDULA; SOURCE 3 ORGANISM_TAXID: 43687; SOURCE 4 GENE: MSED_0455; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21_T1R(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.LEE,K.J.KIM REVDAT 3 27-MAR-24 6IHE 1 REMARK REVDAT 2 09-SEP-20 6IHE 1 TITLE REVDAT 1 06-FEB-19 6IHE 0 JRNL AUTH D.LEE,J.HONG,K.J.KIM JRNL TITL CRYSTAL STRUCTURE AND BIOCHEMICAL CHARACTERIZATION OF MALATE JRNL TITL 2 DEHYDROGENASE FROM METALLOSPHAERA SEDULA JRNL REF BIOCHEM. BIOPHYS. RES. V. 509 833 2019 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 30638660 JRNL DOI 10.1016/J.BBRC.2019.01.018 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 61878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3181 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4526 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.4390 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 220 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.139 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4949 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4879 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6646 ; 1.977 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11295 ; 1.067 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 604 ; 6.581 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;40.333 ;25.055 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 872 ;14.933 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.009 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 752 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5306 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 990 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6IHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65061 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 % (V/V) POLYETHYLENE GLYCOL (PEG) REMARK 280 300, 0.1 M CHES / SODIUM HYDROXIDE PH 9.5, 0.2 M SODIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.31333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.62667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.62667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.31333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.31333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 248 NZ LYS A 251 6554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 37 -9.41 69.14 REMARK 500 GLU A 192 7.48 -65.72 REMARK 500 THR A 219 -80.11 -133.64 REMARK 500 SER A 242 58.51 -90.52 REMARK 500 GLN A 302 48.48 -90.91 REMARK 500 GLU B 37 -10.29 68.59 REMARK 500 THR B 219 -73.51 -137.93 REMARK 500 ALA B 303 -60.04 -96.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 405 REMARK 610 PG4 A 408 REMARK 610 PGE B 406 REMARK 610 PEG B 410 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 410 DBREF1 6IHE A 2 304 UNP A0A088E2H7_9CREN DBREF2 6IHE A A0A088E2H7 2 304 DBREF1 6IHE B 2 304 UNP A0A088E2H7_9CREN DBREF2 6IHE B A0A088E2H7 2 304 SEQRES 1 A 303 ALA LYS VAL GLY PHE ILE GLY ALA GLY LYS ILE GLY GLN SEQRES 2 A 303 THR ILE ALA TYR SER ALA LEU VAL SER GLY ALA VAL ASP SEQRES 3 A 303 GLU ALA VAL ILE TYR ASP ILE ILE PRO GLU LEU PRO ASP SEQRES 4 A 303 LYS PHE GLU HIS GLU LEU ARG HIS ALA PHE ALA THR LYS SEQRES 5 A 303 GLY ILE LYS ALA ASN VAL LEU GLY THR ASN SER LEU ASP SEQRES 6 A 303 ASP VAL SER GLY MET ASP ILE VAL VAL ILE SER ALA GLY SEQRES 7 A 303 LYS PRO ARG LYS PRO GLY MET SER ARG ARG ASP LEU PHE SEQRES 8 A 303 VAL ASP ASN ALA LYS ILE MET ILE ASP LEU ALA GLN LYS SEQRES 9 A 303 LEU PRO SER LYS ASN PRO GLY ALA ILE TYR LEU MET VAL SEQRES 10 A 303 ALA ASN PRO VAL ASP MET MET ALA SER VAL PHE MET LYS SEQRES 11 A 303 TYR SER LYS GLN PHE THR ILE SER ALA GLY ASP GLN VAL SEQRES 12 A 303 GLU THR MET ARG MET ARG SER PHE ILE ALA LYS LYS LEU SEQRES 13 A 303 LYS ILE PRO VAL THR SER VAL ASP GLY PHE VAL GLY GLY SEQRES 14 A 303 GLU HIS GLY GLU ASP ALA VAL VAL LEU TRP SER THR VAL SEQRES 15 A 303 LYS ILE LYS GLY LYS PRO VAL ASP GLU PHE ASN ILE ASN SEQRES 16 A 303 LYS ASP GLU VAL SER ASP TYR VAL LYS LYS ILE PRO GLY SEQRES 17 A 303 GLU ILE ILE ARG VAL ILE GLY GLY THR THR TRP GLY PRO SEQRES 18 A 303 GLY THR ILE ILE ALA ASP ILE ILE LYS SER ILE ALA PHE SEQRES 19 A 303 SER GLU ASN ARG VAL MET SER ILE ALA THR PRO LYS GLU SEQRES 20 A 303 TYR GLU LYS GLU ILE ILE HIS VAL SER ALA PRO THR VAL SEQRES 21 A 303 VAL GLY SER SER ILE GLY PRO SER LEU GLU SER LEU LEU SEQRES 22 A 303 ASP GLU LYS ASP ARG TRP HIS LEU ASN SER ALA MET LYS SEQRES 23 A 303 ASP PHE TYR GLU ALA TYR LYS GLU ASN LEU LYS GLN LEU SEQRES 24 A 303 GLU GLN ALA THR SEQRES 1 B 303 ALA LYS VAL GLY PHE ILE GLY ALA GLY LYS ILE GLY GLN SEQRES 2 B 303 THR ILE ALA TYR SER ALA LEU VAL SER GLY ALA VAL ASP SEQRES 3 B 303 GLU ALA VAL ILE TYR ASP ILE ILE PRO GLU LEU PRO ASP SEQRES 4 B 303 LYS PHE GLU HIS GLU LEU ARG HIS ALA PHE ALA THR LYS SEQRES 5 B 303 GLY ILE LYS ALA ASN VAL LEU GLY THR ASN SER LEU ASP SEQRES 6 B 303 ASP VAL SER GLY MET ASP ILE VAL VAL ILE SER ALA GLY SEQRES 7 B 303 LYS PRO ARG LYS PRO GLY MET SER ARG ARG ASP LEU PHE SEQRES 8 B 303 VAL ASP ASN ALA LYS ILE MET ILE ASP LEU ALA GLN LYS SEQRES 9 B 303 LEU PRO SER LYS ASN PRO GLY ALA ILE TYR LEU MET VAL SEQRES 10 B 303 ALA ASN PRO VAL ASP MET MET ALA SER VAL PHE MET LYS SEQRES 11 B 303 TYR SER LYS GLN PHE THR ILE SER ALA GLY ASP GLN VAL SEQRES 12 B 303 GLU THR MET ARG MET ARG SER PHE ILE ALA LYS LYS LEU SEQRES 13 B 303 LYS ILE PRO VAL THR SER VAL ASP GLY PHE VAL GLY GLY SEQRES 14 B 303 GLU HIS GLY GLU ASP ALA VAL VAL LEU TRP SER THR VAL SEQRES 15 B 303 LYS ILE LYS GLY LYS PRO VAL ASP GLU PHE ASN ILE ASN SEQRES 16 B 303 LYS ASP GLU VAL SER ASP TYR VAL LYS LYS ILE PRO GLY SEQRES 17 B 303 GLU ILE ILE ARG VAL ILE GLY GLY THR THR TRP GLY PRO SEQRES 18 B 303 GLY THR ILE ILE ALA ASP ILE ILE LYS SER ILE ALA PHE SEQRES 19 B 303 SER GLU ASN ARG VAL MET SER ILE ALA THR PRO LYS GLU SEQRES 20 B 303 TYR GLU LYS GLU ILE ILE HIS VAL SER ALA PRO THR VAL SEQRES 21 B 303 VAL GLY SER SER ILE GLY PRO SER LEU GLU SER LEU LEU SEQRES 22 B 303 ASP GLU LYS ASP ARG TRP HIS LEU ASN SER ALA MET LYS SEQRES 23 B 303 ASP PHE TYR GLU ALA TYR LYS GLU ASN LEU LYS GLN LEU SEQRES 24 B 303 GLU GLN ALA THR HET NAD A 401 44 HET MLT A 402 9 HET GOL A 403 6 HET PGE A 404 10 HET PGE A 405 9 HET EDO A 406 4 HET PG4 A 407 13 HET PG4 A 408 12 HET PEG A 409 7 HET NAD B 401 44 HET MLT B 402 9 HET GOL B 403 6 HET PGE B 404 10 HET PGE B 405 10 HET PGE B 406 9 HET EDO B 407 4 HET EDO B 408 4 HET EDO B 409 4 HET PEG B 410 6 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM MLT D-MALATE HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 MLT 2(C4 H6 O5) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 PGE 5(C6 H14 O4) FORMUL 8 EDO 4(C2 H6 O2) FORMUL 9 PG4 2(C8 H18 O5) FORMUL 11 PEG 2(C4 H10 O3) FORMUL 22 HOH *226(H2 O) HELIX 1 AA1 GLY A 10 SER A 23 1 14 HELIX 2 AA2 GLU A 37 GLY A 54 1 18 HELIX 3 AA3 SER A 64 VAL A 68 5 5 HELIX 4 AA4 SER A 87 ASP A 90 5 4 HELIX 5 AA5 LEU A 91 LEU A 106 1 16 HELIX 6 AA6 PRO A 107 ASN A 110 5 4 HELIX 7 AA7 PRO A 121 LYS A 134 1 14 HELIX 8 AA8 ASP A 142 LEU A 157 1 16 HELIX 9 AA9 PRO A 160 THR A 162 5 3 HELIX 10 AB1 HIS A 172 GLU A 174 5 3 HELIX 11 AB2 TRP A 180 THR A 182 5 3 HELIX 12 AB3 ASP A 191 PHE A 193 5 3 HELIX 13 AB4 ASN A 196 GLY A 216 1 21 HELIX 14 AB5 THR A 219 PHE A 235 1 17 HELIX 15 AB6 GLU A 271 LEU A 274 5 4 HELIX 16 AB7 ASP A 275 GLN A 302 1 28 HELIX 17 AB8 GLY B 10 SER B 23 1 14 HELIX 18 AB9 GLU B 37 GLY B 54 1 18 HELIX 19 AC1 SER B 64 VAL B 68 5 5 HELIX 20 AC2 ARG B 88 ASP B 90 5 3 HELIX 21 AC3 LEU B 91 GLN B 104 1 14 HELIX 22 AC4 LYS B 105 ASN B 110 1 6 HELIX 23 AC5 PRO B 121 LYS B 134 1 14 HELIX 24 AC6 ASP B 142 LYS B 158 1 17 HELIX 25 AC7 PRO B 160 THR B 162 5 3 HELIX 26 AC8 HIS B 172 GLU B 174 5 3 HELIX 27 AC9 ASP B 191 PHE B 193 5 3 HELIX 28 AD1 ASN B 196 GLY B 216 1 21 HELIX 29 AD2 THR B 219 PHE B 235 1 17 HELIX 30 AD3 GLU B 271 LEU B 274 5 4 HELIX 31 AD4 ASP B 275 GLN B 302 1 28 SHEET 1 AA1 6 ASN A 58 THR A 62 0 SHEET 2 AA1 6 GLU A 28 TYR A 32 1 N ILE A 31 O LEU A 60 SHEET 3 AA1 6 LYS A 3 ILE A 7 1 N PHE A 6 O TYR A 32 SHEET 4 AA1 6 ILE A 73 ILE A 76 1 O VAL A 75 N GLY A 5 SHEET 5 AA1 6 ILE A 114 MET A 117 1 O LEU A 116 N VAL A 74 SHEET 6 AA1 6 THR A 137 SER A 139 1 O ILE A 138 N MET A 117 SHEET 1 AA2 3 VAL A 164 ASP A 165 0 SHEET 2 AA2 3 LYS A 184 ILE A 185 -1 O LYS A 184 N ASP A 165 SHEET 3 AA2 3 LYS A 188 PRO A 189 -1 O LYS A 188 N ILE A 185 SHEET 1 AA3 2 VAL A 168 GLY A 170 0 SHEET 2 AA3 2 ALA A 176 VAL A 178 -1 O VAL A 177 N GLY A 169 SHEET 1 AA4 3 ARG A 239 MET A 241 0 SHEET 2 AA4 3 THR A 260 VAL A 262 -1 O VAL A 262 N ARG A 239 SHEET 3 AA4 3 ILE A 266 SER A 269 -1 O GLY A 267 N VAL A 261 SHEET 1 AA5 2 ALA A 244 TYR A 249 0 SHEET 2 AA5 2 GLU A 252 SER A 257 -1 O ILE A 254 N LYS A 247 SHEET 1 AA6 6 ASN B 58 THR B 62 0 SHEET 2 AA6 6 GLU B 28 TYR B 32 1 N ILE B 31 O LEU B 60 SHEET 3 AA6 6 LYS B 3 ILE B 7 1 N PHE B 6 O TYR B 32 SHEET 4 AA6 6 ILE B 73 ILE B 76 1 O VAL B 75 N GLY B 5 SHEET 5 AA6 6 ILE B 114 MET B 117 1 O LEU B 116 N VAL B 74 SHEET 6 AA6 6 THR B 137 SER B 139 1 O ILE B 138 N TYR B 115 SHEET 1 AA7 3 VAL B 164 GLY B 170 0 SHEET 2 AA7 3 ALA B 176 ILE B 185 -1 O LEU B 179 N PHE B 167 SHEET 3 AA7 3 LYS B 188 PRO B 189 -1 O LYS B 188 N ILE B 185 SHEET 1 AA8 3 ARG B 239 MET B 241 0 SHEET 2 AA8 3 THR B 260 VAL B 262 -1 O THR B 260 N MET B 241 SHEET 3 AA8 3 ILE B 266 SER B 269 -1 O GLY B 267 N VAL B 261 SHEET 1 AA9 2 ALA B 244 TYR B 249 0 SHEET 2 AA9 2 GLU B 252 SER B 257 -1 O ILE B 254 N LYS B 247 CISPEP 1 ASN A 120 PRO A 121 0 -3.37 CISPEP 2 GLY A 267 PRO A 268 0 1.30 CISPEP 3 ASN B 120 PRO B 121 0 -1.34 CISPEP 4 GLY B 267 PRO B 268 0 1.05 SITE 1 AC1 23 GLY A 10 LYS A 11 ILE A 12 TYR A 32 SITE 2 AC1 23 ASP A 33 ILE A 34 ILE A 35 SER A 77 SITE 3 AC1 23 ALA A 78 GLY A 79 LYS A 80 PRO A 81 SITE 4 AC1 23 VAL A 118 ASN A 120 VAL A 144 THR A 218 SITE 5 AC1 23 MLT A 402 HOH A 509 HOH A 515 HOH A 532 SITE 6 AC1 23 HOH A 553 HOH A 560 HOH A 563 SITE 1 AC2 11 ARG A 82 ARG A 88 ASN A 120 ARG A 148 SITE 2 AC2 11 HIS A 172 PRO A 208 ILE A 212 THR A 218 SITE 3 AC2 11 NAD A 401 HOH A 509 HOH A 560 SITE 1 AC3 5 LYS A 131 TYR A 132 LYS A 134 GLU A 250 SITE 2 AC3 5 HOH A 507 SITE 1 AC4 3 ASP A 27 ASN A 58 HOH A 526 SITE 1 AC5 6 PHE A 167 THR A 182 LEU A 273 HOH A 580 SITE 2 AC5 6 GLY B 267 PRO B 268 SITE 1 AC6 5 SER A 19 VAL A 22 SER A 23 LYS A 53 SITE 2 AC6 5 HOH A 504 SITE 1 AC7 4 ASP A 72 GLY A 112 HOH A 568 LYS B 186 SITE 1 AC8 6 THR A 162 SER A 163 LYS A 186 ASP B 72 SITE 2 AC8 6 GLY B 112 PGE B 405 SITE 1 AC9 1 GLU A 276 SITE 1 AD1 30 GLY B 10 LYS B 11 ILE B 12 TYR B 32 SITE 2 AD1 30 ASP B 33 ILE B 34 ILE B 35 LEU B 38 SITE 3 AD1 30 SER B 77 ALA B 78 GLY B 79 LYS B 80 SITE 4 AD1 30 PRO B 81 ASN B 95 ILE B 98 VAL B 118 SITE 5 AD1 30 ALA B 119 ASN B 120 VAL B 144 THR B 218 SITE 6 AD1 30 PRO B 222 MLT B 402 HOH B 502 HOH B 503 SITE 7 AD1 30 HOH B 515 HOH B 530 HOH B 534 HOH B 538 SITE 8 AD1 30 HOH B 571 HOH B 578 SITE 1 AD2 8 ARG B 82 ARG B 88 ASN B 120 ARG B 148 SITE 2 AD2 8 ILE B 212 THR B 218 NAD B 401 HOH B 502 SITE 1 AD3 5 LYS A 231 GLU A 237 LYS B 231 GLU B 237 SITE 2 AD3 5 HOH B 565 SITE 1 AD4 4 ASP A 40 LYS A 41 ILE A 207 LYS B 251 SITE 1 AD5 8 LYS A 186 GLY A 187 PG4 A 408 GLY B 112 SITE 2 AD5 8 PHE B 136 SER B 264 SER B 265 ILE B 266 SITE 1 AD6 2 SER B 108 LYS B 109 SITE 1 AD7 4 TRP B 280 ASN B 283 SER B 284 LYS B 287 SITE 1 AD8 3 PHE B 167 THR B 182 HOH B 501 SITE 1 AD9 4 SER B 19 VAL B 22 SER B 23 LYS B 53 SITE 1 AE1 3 GLU B 199 ASP B 202 HOH B 582 CRYST1 134.194 134.194 81.940 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007452 0.004302 0.000000 0.00000 SCALE2 0.000000 0.008605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012204 0.00000