HEADER HYDROLASE 06-OCT-18 6IIK TITLE USP14 CATALYTIC DOMAIN WITH IU1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEUBIQUITINATING ENZYME 14,UBIQUITIN THIOESTERASE 14, COMPND 5 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 14; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP14, TGT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 7 PPPARG4; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS USP14 INHIBITOR COMPLEX, STRUCTURAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.Q.MEI,Y.W.WANG,W.HE,F.WANG REVDAT 3 22-NOV-23 6IIK 1 REMARK REVDAT 2 19-DEC-18 6IIK 1 JRNL REVDAT 1 12-DEC-18 6IIK 0 JRNL AUTH Y.WANG,Y.JIANG,S.DING,J.LI,N.SONG,Y.REN,D.HONG,C.WU,B.LI, JRNL AUTH 2 F.WANG,W.HE,J.WANG,Z.MEI JRNL TITL SMALL MOLECULE INHIBITORS REVEAL ALLOSTERIC REGULATION OF JRNL TITL 2 USP14 VIA STERIC BLOCKADE. JRNL REF CELL RES. V. 28 1186 2018 JRNL REFN ISSN 1748-7838 JRNL PMID 30254335 JRNL DOI 10.1038/S41422-018-0091-X REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX.REFINE: 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 68318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2205 - 5.7454 0.95 2591 165 0.1856 0.1983 REMARK 3 2 5.7454 - 4.5659 0.99 2702 138 0.1618 0.1982 REMARK 3 3 4.5659 - 3.9904 0.99 2690 138 0.1632 0.1879 REMARK 3 4 3.9904 - 3.6263 0.99 2643 141 0.1735 0.1781 REMARK 3 5 3.6263 - 3.3668 0.99 2667 143 0.1807 0.2017 REMARK 3 6 3.3668 - 3.1685 0.98 2674 125 0.1988 0.2486 REMARK 3 7 3.1685 - 3.0100 0.98 2596 154 0.2019 0.2712 REMARK 3 8 3.0100 - 2.8791 0.98 2606 143 0.1929 0.2391 REMARK 3 9 2.8791 - 2.7683 0.98 2588 155 0.1954 0.2230 REMARK 3 10 2.7683 - 2.6729 0.97 2640 124 0.2018 0.2340 REMARK 3 11 2.6729 - 2.5894 0.98 2639 138 0.1958 0.2164 REMARK 3 12 2.5894 - 2.5154 0.98 2602 140 0.1992 0.2196 REMARK 3 13 2.5154 - 2.4492 0.97 2590 150 0.1935 0.2184 REMARK 3 14 2.4492 - 2.3895 0.97 2608 135 0.1961 0.2157 REMARK 3 15 2.3895 - 2.3352 0.98 2589 139 0.1895 0.2371 REMARK 3 16 2.3352 - 2.2855 0.98 2612 139 0.1900 0.2148 REMARK 3 17 2.2855 - 2.2398 0.99 2650 144 0.2042 0.2736 REMARK 3 18 2.2398 - 2.1975 0.97 2593 151 0.2035 0.2357 REMARK 3 19 2.1975 - 2.1583 0.98 2608 135 0.2148 0.2513 REMARK 3 20 2.1583 - 2.1217 0.98 2623 125 0.2208 0.2750 REMARK 3 21 2.1217 - 2.0875 0.99 2646 122 0.2295 0.2802 REMARK 3 22 2.0875 - 2.0554 0.98 2646 132 0.2410 0.2868 REMARK 3 23 2.0554 - 2.0252 0.98 2618 148 0.2523 0.2766 REMARK 3 24 2.0252 - 1.9967 0.99 2566 144 0.2840 0.2920 REMARK 3 25 1.9967 - 1.9697 0.68 1880 83 0.2684 0.3285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5537 REMARK 3 ANGLE : 1.208 7457 REMARK 3 CHIRALITY : 0.081 812 REMARK 3 PLANARITY : 0.005 951 REMARK 3 DIHEDRAL : 14.079 2098 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -6.7137 8.0693 -10.2972 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.2086 REMARK 3 T33: 0.1587 T12: 0.0195 REMARK 3 T13: -0.0331 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.0398 L22: 3.6033 REMARK 3 L33: 1.3543 L12: 0.0694 REMARK 3 L13: -0.1936 L23: 0.4998 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: 0.1031 S13: -0.0083 REMARK 3 S21: -0.2994 S22: -0.0439 S23: 0.2804 REMARK 3 S31: -0.0759 S32: -0.2070 S33: -0.0134 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -21.6187 48.2060 -41.7964 REMARK 3 T TENSOR REMARK 3 T11: 0.6114 T22: 0.2244 REMARK 3 T33: 0.1553 T12: 0.0101 REMARK 3 T13: -0.0987 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.8042 L22: 3.9633 REMARK 3 L33: 1.5306 L12: 0.4253 REMARK 3 L13: 0.6743 L23: -0.2444 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: -0.2151 S13: 0.0124 REMARK 3 S21: 0.3955 S22: -0.0903 S23: 0.0177 REMARK 3 S31: -0.1272 S32: -0.0816 S33: 0.0125 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD SAPPHIRE CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2AYN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NH4F. PEG 3350, GLYCINE, CSCL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.83500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 96 REMARK 465 LEU A 97 REMARK 465 ALA A 98 REMARK 465 SER A 99 REMARK 465 ALA A 100 REMARK 465 MET A 101 REMARK 465 ASP A 221 REMARK 465 SER A 222 REMARK 465 VAL A 223 REMARK 465 LYS A 224 REMARK 465 GLU A 225 REMARK 465 THR A 226 REMARK 465 ASP A 227 REMARK 465 SER A 228 REMARK 465 SER A 229 REMARK 465 SER A 230 REMARK 465 ALA A 231 REMARK 465 SER A 232 REMARK 465 ALA A 233 REMARK 465 ALA A 234 REMARK 465 THR A 235 REMARK 465 PRO A 236 REMARK 465 SER A 237 REMARK 465 LYS A 238 REMARK 465 LYS A 239 REMARK 465 TYR A 333 REMARK 465 LYS A 334 REMARK 465 GLU A 335 REMARK 465 LYS A 336 REMARK 465 GLU A 337 REMARK 465 SER A 338 REMARK 465 VAL A 339 REMARK 465 GLU A 378 REMARK 465 ASP A 379 REMARK 465 LYS A 380 REMARK 465 LYS A 381 REMARK 465 VAL A 382 REMARK 465 ASN A 383 REMARK 465 GLN A 384 REMARK 465 GLN A 385 REMARK 465 PRO A 386 REMARK 465 ASN A 387 REMARK 465 THR A 388 REMARK 465 SER A 389 REMARK 465 ASP A 390 REMARK 465 LYS A 391 REMARK 465 LYS A 392 REMARK 465 SER A 393 REMARK 465 SER A 394 REMARK 465 PRO A 395 REMARK 465 GLN A 396 REMARK 465 LYS A 397 REMARK 465 GLU A 398 REMARK 465 VAL A 399 REMARK 465 LYS A 400 REMARK 465 GLU A 486 REMARK 465 ILE A 487 REMARK 465 MET A 488 REMARK 465 GLU A 489 REMARK 465 GLU A 490 REMARK 465 GLU A 491 REMARK 465 SER A 492 REMARK 465 GLU A 493 REMARK 465 GLN A 494 REMARK 465 GLN B 96 REMARK 465 LEU B 97 REMARK 465 ALA B 98 REMARK 465 SER B 99 REMARK 465 ALA B 100 REMARK 465 MET B 101 REMARK 465 ASP B 221 REMARK 465 SER B 222 REMARK 465 VAL B 223 REMARK 465 LYS B 224 REMARK 465 GLU B 225 REMARK 465 THR B 226 REMARK 465 ASP B 227 REMARK 465 SER B 228 REMARK 465 SER B 229 REMARK 465 SER B 230 REMARK 465 ALA B 231 REMARK 465 SER B 232 REMARK 465 ALA B 233 REMARK 465 ALA B 234 REMARK 465 THR B 235 REMARK 465 PRO B 236 REMARK 465 SER B 237 REMARK 465 LYS B 238 REMARK 465 LYS B 239 REMARK 465 TYR B 333 REMARK 465 LYS B 334 REMARK 465 GLU B 335 REMARK 465 LYS B 336 REMARK 465 GLU B 337 REMARK 465 SER B 338 REMARK 465 VAL B 339 REMARK 465 ASN B 340 REMARK 465 ASP B 376 REMARK 465 LEU B 377 REMARK 465 GLU B 378 REMARK 465 ASP B 379 REMARK 465 LYS B 380 REMARK 465 LYS B 381 REMARK 465 VAL B 382 REMARK 465 ASN B 383 REMARK 465 GLN B 384 REMARK 465 GLN B 385 REMARK 465 PRO B 386 REMARK 465 ASN B 387 REMARK 465 THR B 388 REMARK 465 SER B 389 REMARK 465 ASP B 390 REMARK 465 LYS B 391 REMARK 465 LYS B 392 REMARK 465 SER B 393 REMARK 465 SER B 394 REMARK 465 PRO B 395 REMARK 465 GLN B 396 REMARK 465 LYS B 397 REMARK 465 GLU B 398 REMARK 465 VAL B 399 REMARK 465 ILE B 487 REMARK 465 MET B 488 REMARK 465 GLU B 489 REMARK 465 GLU B 490 REMARK 465 GLU B 491 REMARK 465 SER B 492 REMARK 465 GLU B 493 REMARK 465 GLN B 494 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B 332 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 285 O HOH A 601 1.81 REMARK 500 O HOH A 756 O HOH A 758 1.84 REMARK 500 O TRP B 472 O HOH B 601 1.89 REMARK 500 OE1 GLN B 206 O HOH B 602 2.05 REMARK 500 NE2 GLN A 177 O HOH A 602 2.06 REMARK 500 OE1 GLN A 301 O HOH A 603 2.08 REMARK 500 O HOH A 693 O HOH A 778 2.09 REMARK 500 O HOH B 664 O HOH B 702 2.14 REMARK 500 O HOH A 610 O HOH A 638 2.14 REMARK 500 O HOH A 672 O HOH A 770 2.16 REMARK 500 O HOH A 754 O HOH A 782 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 424 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 168 -121.15 -81.77 REMARK 500 ASN A 280 -152.95 -124.22 REMARK 500 PHE A 331 84.67 -56.41 REMARK 500 ASP A 409 84.10 -153.94 REMARK 500 SER A 432 30.48 -140.73 REMARK 500 ASP A 451 79.79 -101.54 REMARK 500 ASP A 452 -109.46 55.73 REMARK 500 SER B 168 -118.73 -91.22 REMARK 500 GLU B 259 36.21 -86.86 REMARK 500 SER B 260 132.09 70.54 REMARK 500 GLU B 261 -76.59 -160.43 REMARK 500 GLU B 264 101.87 55.69 REMARK 500 GLN B 281 -48.81 62.67 REMARK 500 LEU B 305 90.23 58.85 REMARK 500 SER B 433 -150.21 -157.73 REMARK 500 ASP B 451 78.46 -102.20 REMARK 500 ASP B 452 -110.92 55.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 796 DISTANCE = 6.50 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IU1 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IU1 B 501 DBREF 6IIK A 96 494 UNP P54578 UBP14_HUMAN 96 494 DBREF 6IIK B 96 494 UNP P54578 UBP14_HUMAN 96 494 SEQRES 1 A 399 GLN LEU ALA SER ALA MET GLU LEU PRO CYS GLY LEU THR SEQRES 2 A 399 ASN LEU GLY ASN THR CYS TYR MET ASN ALA THR VAL GLN SEQRES 3 A 399 CYS ILE ARG SER VAL PRO GLU LEU LYS ASP ALA LEU LYS SEQRES 4 A 399 ARG TYR ALA GLY ALA LEU ARG ALA SER GLY GLU MET ALA SEQRES 5 A 399 SER ALA GLN TYR ILE THR ALA ALA LEU ARG ASP LEU PHE SEQRES 6 A 399 ASP SER MET ASP LYS THR SER SER SER ILE PRO PRO ILE SEQRES 7 A 399 ILE LEU LEU GLN PHE LEU HIS MET ALA PHE PRO GLN PHE SEQRES 8 A 399 ALA GLU LYS GLY GLU GLN GLY GLN TYR LEU GLN GLN ASP SEQRES 9 A 399 ALA ASN GLU CYS TRP ILE GLN MET MET ARG VAL LEU GLN SEQRES 10 A 399 GLN LYS LEU GLU ALA ILE GLU ASP ASP SER VAL LYS GLU SEQRES 11 A 399 THR ASP SER SER SER ALA SER ALA ALA THR PRO SER LYS SEQRES 12 A 399 LYS LYS SER LEU ILE ASP GLN PHE PHE GLY VAL GLU PHE SEQRES 13 A 399 GLU THR THR MET LYS CYS THR GLU SER GLU GLU GLU GLU SEQRES 14 A 399 VAL THR LYS GLY LYS GLU ASN GLN LEU GLN LEU SER CYS SEQRES 15 A 399 PHE ILE ASN GLN GLU VAL LYS TYR LEU PHE THR GLY LEU SEQRES 16 A 399 LYS LEU ARG LEU GLN GLU GLU ILE THR LYS GLN SER PRO SEQRES 17 A 399 THR LEU GLN ARG ASN ALA LEU TYR ILE LYS SER SER LYS SEQRES 18 A 399 ILE SER ARG LEU PRO ALA TYR LEU THR ILE GLN MET VAL SEQRES 19 A 399 ARG PHE PHE TYR LYS GLU LYS GLU SER VAL ASN ALA LYS SEQRES 20 A 399 VAL LEU LYS ASP VAL LYS PHE PRO LEU MET LEU ASP MET SEQRES 21 A 399 TYR GLU LEU CYS THR PRO GLU LEU GLN GLU LYS MET VAL SEQRES 22 A 399 SER PHE ARG SER LYS PHE LYS ASP LEU GLU ASP LYS LYS SEQRES 23 A 399 VAL ASN GLN GLN PRO ASN THR SER ASP LYS LYS SER SER SEQRES 24 A 399 PRO GLN LYS GLU VAL LYS TYR GLU PRO PHE SER PHE ALA SEQRES 25 A 399 ASP ASP ILE GLY SER ASN ASN CYS GLY TYR TYR ASP LEU SEQRES 26 A 399 GLN ALA VAL LEU THR HIS GLN GLY ARG SER SER SER SER SEQRES 27 A 399 GLY HIS TYR VAL SER TRP VAL LYS ARG LYS GLN ASP GLU SEQRES 28 A 399 TRP ILE LYS PHE ASP ASP ASP LYS VAL SER ILE VAL THR SEQRES 29 A 399 PRO GLU ASP ILE LEU ARG LEU SER GLY GLY GLY ASP TRP SEQRES 30 A 399 HIS ILE ALA TYR VAL LEU LEU TYR GLY PRO ARG ARG VAL SEQRES 31 A 399 GLU ILE MET GLU GLU GLU SER GLU GLN SEQRES 1 B 399 GLN LEU ALA SER ALA MET GLU LEU PRO CYS GLY LEU THR SEQRES 2 B 399 ASN LEU GLY ASN THR CYS TYR MET ASN ALA THR VAL GLN SEQRES 3 B 399 CYS ILE ARG SER VAL PRO GLU LEU LYS ASP ALA LEU LYS SEQRES 4 B 399 ARG TYR ALA GLY ALA LEU ARG ALA SER GLY GLU MET ALA SEQRES 5 B 399 SER ALA GLN TYR ILE THR ALA ALA LEU ARG ASP LEU PHE SEQRES 6 B 399 ASP SER MET ASP LYS THR SER SER SER ILE PRO PRO ILE SEQRES 7 B 399 ILE LEU LEU GLN PHE LEU HIS MET ALA PHE PRO GLN PHE SEQRES 8 B 399 ALA GLU LYS GLY GLU GLN GLY GLN TYR LEU GLN GLN ASP SEQRES 9 B 399 ALA ASN GLU CYS TRP ILE GLN MET MET ARG VAL LEU GLN SEQRES 10 B 399 GLN LYS LEU GLU ALA ILE GLU ASP ASP SER VAL LYS GLU SEQRES 11 B 399 THR ASP SER SER SER ALA SER ALA ALA THR PRO SER LYS SEQRES 12 B 399 LYS LYS SER LEU ILE ASP GLN PHE PHE GLY VAL GLU PHE SEQRES 13 B 399 GLU THR THR MET LYS CYS THR GLU SER GLU GLU GLU GLU SEQRES 14 B 399 VAL THR LYS GLY LYS GLU ASN GLN LEU GLN LEU SER CYS SEQRES 15 B 399 PHE ILE ASN GLN GLU VAL LYS TYR LEU PHE THR GLY LEU SEQRES 16 B 399 LYS LEU ARG LEU GLN GLU GLU ILE THR LYS GLN SER PRO SEQRES 17 B 399 THR LEU GLN ARG ASN ALA LEU TYR ILE LYS SER SER LYS SEQRES 18 B 399 ILE SER ARG LEU PRO ALA TYR LEU THR ILE GLN MET VAL SEQRES 19 B 399 ARG PHE PHE TYR LYS GLU LYS GLU SER VAL ASN ALA LYS SEQRES 20 B 399 VAL LEU LYS ASP VAL LYS PHE PRO LEU MET LEU ASP MET SEQRES 21 B 399 TYR GLU LEU CYS THR PRO GLU LEU GLN GLU LYS MET VAL SEQRES 22 B 399 SER PHE ARG SER LYS PHE LYS ASP LEU GLU ASP LYS LYS SEQRES 23 B 399 VAL ASN GLN GLN PRO ASN THR SER ASP LYS LYS SER SER SEQRES 24 B 399 PRO GLN LYS GLU VAL LYS TYR GLU PRO PHE SER PHE ALA SEQRES 25 B 399 ASP ASP ILE GLY SER ASN ASN CYS GLY TYR TYR ASP LEU SEQRES 26 B 399 GLN ALA VAL LEU THR HIS GLN GLY ARG SER SER SER SER SEQRES 27 B 399 GLY HIS TYR VAL SER TRP VAL LYS ARG LYS GLN ASP GLU SEQRES 28 B 399 TRP ILE LYS PHE ASP ASP ASP LYS VAL SER ILE VAL THR SEQRES 29 B 399 PRO GLU ASP ILE LEU ARG LEU SER GLY GLY GLY ASP TRP SEQRES 30 B 399 HIS ILE ALA TYR VAL LEU LEU TYR GLY PRO ARG ARG VAL SEQRES 31 B 399 GLU ILE MET GLU GLU GLU SER GLU GLN HET IU1 A 501 22 HET IU1 B 501 22 HETNAM IU1 1-[1-(4-FLUOROPHENYL)-2,5-DIMETHYL-1H-PYRROL-3-YL]-2- HETNAM 2 IU1 (PYRROLIDIN-1-YL)ETHAN-1-ONE FORMUL 3 IU1 2(C18 H21 F N2 O) FORMUL 5 HOH *322(H2 O) HELIX 1 AA1 THR A 113 SER A 125 1 13 HELIX 2 AA2 VAL A 126 TYR A 136 1 11 HELIX 3 AA3 MET A 146 THR A 166 1 21 HELIX 4 AA4 PRO A 172 PHE A 183 1 12 HELIX 5 AA5 PRO A 184 GLU A 188 5 5 HELIX 6 AA6 ASP A 199 LEU A 215 1 17 HELIX 7 AA7 SER A 241 GLY A 248 1 8 HELIX 8 AA8 TYR A 285 LEU A 294 1 10 HELIX 9 AA9 TYR A 356 CYS A 359 5 4 HELIX 10 AB1 THR A 360 LEU A 377 1 18 HELIX 11 AB2 THR A 459 ARG A 465 1 7 HELIX 12 AB3 LEU A 466 GLY A 468 5 3 HELIX 13 AB4 THR B 113 SER B 125 1 13 HELIX 14 AB5 VAL B 126 TYR B 136 1 11 HELIX 15 AB6 MET B 146 THR B 166 1 21 HELIX 16 AB7 PRO B 172 PHE B 183 1 12 HELIX 17 AB8 PRO B 184 GLU B 188 5 5 HELIX 18 AB9 ASP B 199 LEU B 215 1 17 HELIX 19 AC1 SER B 241 GLY B 248 1 8 HELIX 20 AC2 TYR B 285 LEU B 294 1 10 HELIX 21 AC3 TYR B 356 CYS B 359 5 4 HELIX 22 AC4 THR B 360 SER B 372 1 13 HELIX 23 AC5 THR B 459 ARG B 465 1 7 HELIX 24 AC6 LEU B 466 GLY B 468 5 3 SHEET 1 AA1 2 GLY A 106 LEU A 107 0 SHEET 2 AA1 2 SER A 169 ILE A 170 1 O ILE A 170 N GLY A 106 SHEET 1 AA2 4 THR A 266 GLN A 272 0 SHEET 2 AA2 4 VAL A 249 CYS A 257 -1 N VAL A 249 O GLN A 272 SHEET 3 AA2 4 ARG A 307 ARG A 319 -1 O SER A 318 N GLU A 250 SHEET 4 AA2 4 GLN A 295 SER A 302 -1 N ILE A 298 O TYR A 311 SHEET 1 AA3 5 LEU A 275 PHE A 278 0 SHEET 2 AA3 5 LEU A 324 VAL A 329 1 O GLN A 327 N CYS A 277 SHEET 3 AA3 5 ILE A 474 PRO A 482 -1 O TYR A 476 N MET A 328 SHEET 4 AA3 5 TYR A 417 GLN A 427 -1 N GLN A 421 O LEU A 479 SHEET 5 AA3 5 MET A 352 ASP A 354 -1 N LEU A 353 O TYR A 418 SHEET 1 AA4 7 LEU A 275 PHE A 278 0 SHEET 2 AA4 7 LEU A 324 VAL A 329 1 O GLN A 327 N CYS A 277 SHEET 3 AA4 7 ILE A 474 PRO A 482 -1 O TYR A 476 N MET A 328 SHEET 4 AA4 7 TYR A 417 GLN A 427 -1 N GLN A 421 O LEU A 479 SHEET 5 AA4 7 HIS A 435 LYS A 443 -1 O VAL A 437 N THR A 425 SHEET 6 AA4 7 GLU A 446 ASP A 451 -1 O PHE A 450 N SER A 438 SHEET 7 AA4 7 LYS A 454 VAL A 458 -1 O SER A 456 N LYS A 449 SHEET 1 AA5 2 GLY B 106 LEU B 107 0 SHEET 2 AA5 2 SER B 169 ILE B 170 1 O ILE B 170 N GLY B 106 SHEET 1 AA6 4 THR B 266 GLN B 272 0 SHEET 2 AA6 4 VAL B 249 CYS B 257 -1 N VAL B 249 O GLN B 272 SHEET 3 AA6 4 ASN B 308 ARG B 319 -1 O SER B 318 N GLU B 250 SHEET 4 AA6 4 GLN B 295 GLN B 301 -1 N GLU B 296 O LYS B 313 SHEET 1 AA7 5 LEU B 275 PHE B 278 0 SHEET 2 AA7 5 LEU B 324 VAL B 329 1 O GLN B 327 N LEU B 275 SHEET 3 AA7 5 ILE B 474 PRO B 482 -1 O TYR B 480 N LEU B 324 SHEET 4 AA7 5 TYR B 417 GLN B 427 -1 N LEU B 424 O VAL B 477 SHEET 5 AA7 5 MET B 352 ASP B 354 -1 N LEU B 353 O TYR B 418 SHEET 1 AA8 7 LEU B 275 PHE B 278 0 SHEET 2 AA8 7 LEU B 324 VAL B 329 1 O GLN B 327 N LEU B 275 SHEET 3 AA8 7 ILE B 474 PRO B 482 -1 O TYR B 480 N LEU B 324 SHEET 4 AA8 7 TYR B 417 GLN B 427 -1 N LEU B 424 O VAL B 477 SHEET 5 AA8 7 HIS B 435 LYS B 443 -1 O VAL B 437 N THR B 425 SHEET 6 AA8 7 GLU B 446 ASP B 451 -1 O PHE B 450 N SER B 438 SHEET 7 AA8 7 LYS B 454 VAL B 458 -1 O SER B 456 N LYS B 449 CISPEP 1 GLU A 145 MET A 146 0 -3.11 CISPEP 2 GLU A 219 ASP A 220 0 4.56 CISPEP 3 SER B 260 GLU B 261 0 -6.99 SITE 1 AC1 9 GLN A 197 GLN A 198 ASP A 199 LYS A 342 SITE 2 AC1 9 HIS A 426 SER A 431 SER A 433 TYR A 436 SITE 3 AC1 9 TYR A 476 SITE 1 AC2 9 GLN B 197 GLN B 198 ASP B 199 LYS B 342 SITE 2 AC2 9 HIS B 426 SER B 431 SER B 433 TYR B 436 SITE 3 AC2 9 TYR B 476 CRYST1 57.869 81.670 107.371 90.00 93.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017280 0.000000 0.001111 0.00000 SCALE2 0.000000 0.012244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009333 0.00000