HEADER HYDROLASE 07-OCT-18 6IIM TITLE USP14 CATALYTIC DOMAIN WITH IU1-206 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 14,UBIQUITIN THIOESTERASE 14, COMPND 6 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 14; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP14, TGT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS USP14 INHIBITOR COMPLEX, STRUCTURAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.Q.MEI,J.W.WANG,F.WANG,Y.W.WANG REVDAT 3 22-NOV-23 6IIM 1 REMARK REVDAT 2 19-DEC-18 6IIM 1 JRNL REVDAT 1 12-DEC-18 6IIM 0 JRNL AUTH Y.WANG,Y.JIANG,S.DING,J.LI,N.SONG,Y.REN,D.HONG,C.WU,B.LI, JRNL AUTH 2 F.WANG,W.HE,J.WANG,Z.MEI JRNL TITL SMALL MOLECULE INHIBITORS REVEAL ALLOSTERIC REGULATION OF JRNL TITL 2 USP14 VIA STERIC BLOCKADE. JRNL REF CELL RES. V. 28 1186 2018 JRNL REFN ISSN 1748-7838 JRNL PMID 30254335 JRNL DOI 10.1038/S41422-018-0091-X REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 48730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2472 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6389 - 5.7722 0.92 2522 146 0.1954 0.2176 REMARK 3 2 5.7722 - 4.5871 0.96 2619 135 0.1839 0.2172 REMARK 3 3 4.5871 - 4.0088 0.94 2529 143 0.1877 0.2187 REMARK 3 4 4.0088 - 3.6430 0.95 2535 152 0.2042 0.2552 REMARK 3 5 3.6430 - 3.3823 0.96 2561 138 0.1996 0.2475 REMARK 3 6 3.3823 - 3.1831 0.97 2639 134 0.2144 0.2368 REMARK 3 7 3.1831 - 3.0239 0.98 2593 147 0.2153 0.2559 REMARK 3 8 3.0239 - 2.8924 0.98 2634 118 0.2128 0.2743 REMARK 3 9 2.8924 - 2.7811 0.98 2613 127 0.2052 0.2847 REMARK 3 10 2.7811 - 2.6852 0.98 2672 130 0.2239 0.3012 REMARK 3 11 2.6852 - 2.6013 0.98 2601 135 0.2127 0.2313 REMARK 3 12 2.6013 - 2.5270 0.98 2595 144 0.2267 0.2872 REMARK 3 13 2.5270 - 2.4605 0.98 2619 126 0.2238 0.2930 REMARK 3 14 2.4605 - 2.4005 0.97 2608 141 0.2341 0.2855 REMARK 3 15 2.4005 - 2.3459 0.97 2589 140 0.2275 0.2798 REMARK 3 16 2.3459 - 2.2960 0.95 2508 144 0.2512 0.3093 REMARK 3 17 2.2960 - 2.2501 0.94 2458 134 0.2675 0.3391 REMARK 3 18 2.2501 - 2.2077 0.88 2363 138 0.2696 0.3187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5543 REMARK 3 ANGLE : 1.178 7466 REMARK 3 CHIRALITY : 0.074 815 REMARK 3 PLANARITY : 0.005 951 REMARK 3 DIHEDRAL : 14.173 2101 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -7.2367 7.3384 -10.0296 REMARK 3 T TENSOR REMARK 3 T11: 0.1054 T22: 0.2512 REMARK 3 T33: 0.2723 T12: 0.0218 REMARK 3 T13: -0.0118 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.4962 L22: 3.3620 REMARK 3 L33: 1.1023 L12: -0.1199 REMARK 3 L13: -0.1538 L23: 0.1214 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: 0.1018 S13: -0.0656 REMARK 3 S21: -0.2724 S22: -0.1098 S23: 0.2429 REMARK 3 S31: -0.0639 S32: -0.1729 S33: -0.0042 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -21.3965 46.9630 -42.0722 REMARK 3 T TENSOR REMARK 3 T11: 0.7930 T22: 0.3200 REMARK 3 T33: 0.3664 T12: 0.0129 REMARK 3 T13: -0.1871 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.3761 L22: 4.5993 REMARK 3 L33: 2.5870 L12: 0.3961 REMARK 3 L13: 1.2231 L23: -0.7727 REMARK 3 S TENSOR REMARK 3 S11: 0.0908 S12: -0.3431 S13: 0.0120 REMARK 3 S21: 0.1702 S22: -0.1279 S23: 0.2128 REMARK 3 S31: -0.2738 S32: -0.1471 S33: -0.0055 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48730 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2AYN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NH4F, CSCL, GLYCINE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.59300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 96 REMARK 465 LEU A 97 REMARK 465 ALA A 98 REMARK 465 SER A 99 REMARK 465 ALA A 100 REMARK 465 MET A 101 REMARK 465 ASP A 221 REMARK 465 SER A 222 REMARK 465 VAL A 223 REMARK 465 LYS A 224 REMARK 465 GLU A 225 REMARK 465 THR A 226 REMARK 465 ASP A 227 REMARK 465 SER A 228 REMARK 465 SER A 229 REMARK 465 SER A 230 REMARK 465 ALA A 231 REMARK 465 SER A 232 REMARK 465 ALA A 233 REMARK 465 ALA A 234 REMARK 465 THR A 235 REMARK 465 PRO A 236 REMARK 465 SER A 237 REMARK 465 LYS A 238 REMARK 465 LYS A 239 REMARK 465 LYS A 336 REMARK 465 GLU A 337 REMARK 465 SER A 338 REMARK 465 GLU A 378 REMARK 465 ASP A 379 REMARK 465 LYS A 380 REMARK 465 LYS A 381 REMARK 465 VAL A 382 REMARK 465 ASN A 383 REMARK 465 GLN A 384 REMARK 465 GLN A 385 REMARK 465 PRO A 386 REMARK 465 ASN A 387 REMARK 465 THR A 388 REMARK 465 SER A 389 REMARK 465 ASP A 390 REMARK 465 LYS A 391 REMARK 465 LYS A 392 REMARK 465 SER A 393 REMARK 465 SER A 394 REMARK 465 PRO A 395 REMARK 465 GLN A 396 REMARK 465 LYS A 397 REMARK 465 GLU A 398 REMARK 465 VAL A 399 REMARK 465 LYS A 400 REMARK 465 TYR A 401 REMARK 465 GLU A 486 REMARK 465 ILE A 487 REMARK 465 MET A 488 REMARK 465 GLU A 489 REMARK 465 GLU A 490 REMARK 465 GLU A 491 REMARK 465 SER A 492 REMARK 465 GLU A 493 REMARK 465 GLN A 494 REMARK 465 GLN B 96 REMARK 465 LEU B 97 REMARK 465 ALA B 98 REMARK 465 SER B 99 REMARK 465 ALA B 100 REMARK 465 MET B 101 REMARK 465 ASP B 221 REMARK 465 SER B 222 REMARK 465 VAL B 223 REMARK 465 LYS B 224 REMARK 465 GLU B 225 REMARK 465 THR B 226 REMARK 465 ASP B 227 REMARK 465 SER B 228 REMARK 465 SER B 229 REMARK 465 SER B 230 REMARK 465 ALA B 231 REMARK 465 SER B 232 REMARK 465 ALA B 233 REMARK 465 ALA B 234 REMARK 465 THR B 235 REMARK 465 PRO B 236 REMARK 465 SER B 237 REMARK 465 LYS B 238 REMARK 465 LYS B 239 REMARK 465 PHE B 332 REMARK 465 TYR B 333 REMARK 465 LYS B 334 REMARK 465 GLU B 335 REMARK 465 LYS B 336 REMARK 465 GLU B 337 REMARK 465 SER B 338 REMARK 465 VAL B 339 REMARK 465 ASN B 340 REMARK 465 ASP B 376 REMARK 465 LEU B 377 REMARK 465 GLU B 378 REMARK 465 ASP B 379 REMARK 465 LYS B 380 REMARK 465 LYS B 381 REMARK 465 VAL B 382 REMARK 465 ASN B 383 REMARK 465 GLN B 384 REMARK 465 GLN B 385 REMARK 465 PRO B 386 REMARK 465 ASN B 387 REMARK 465 THR B 388 REMARK 465 SER B 389 REMARK 465 ASP B 390 REMARK 465 LYS B 391 REMARK 465 LYS B 392 REMARK 465 SER B 393 REMARK 465 SER B 394 REMARK 465 PRO B 395 REMARK 465 GLN B 396 REMARK 465 LYS B 397 REMARK 465 GLU B 398 REMARK 465 VAL B 399 REMARK 465 LYS B 400 REMARK 465 GLU B 486 REMARK 465 ILE B 487 REMARK 465 MET B 488 REMARK 465 GLU B 489 REMARK 465 GLU B 490 REMARK 465 GLU B 491 REMARK 465 SER B 492 REMARK 465 GLU B 493 REMARK 465 GLN B 494 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 151 O HOH A 601 1.89 REMARK 500 O HOH A 772 O HOH A 791 1.90 REMARK 500 O HOH A 709 O HOH A 763 1.91 REMARK 500 OG SER B 456 O HOH B 601 1.94 REMARK 500 O HOH A 787 O HOH A 790 1.98 REMARK 500 O CYS A 359 O HOH A 602 1.99 REMARK 500 O HOH A 753 O HOH A 767 1.99 REMARK 500 NZ LYS B 449 O HOH B 602 2.01 REMARK 500 OE1 GLU A 446 O HOH A 603 2.02 REMARK 500 O HOH A 728 O HOH A 760 2.02 REMARK 500 O SER A 467 O HOH A 604 2.06 REMARK 500 OE2 GLU A 446 O HOH A 605 2.06 REMARK 500 O HOH A 744 O HOH A 777 2.06 REMARK 500 O HOH A 624 O HOH A 672 2.07 REMARK 500 O HOH A 701 O HOH A 775 2.07 REMARK 500 NZ LYS A 316 O HOH A 606 2.09 REMARK 500 O HOH A 693 O HOH A 724 2.10 REMARK 500 O HOH A 622 O HOH A 706 2.10 REMARK 500 O HOH A 626 O HOH A 774 2.11 REMARK 500 O HOH B 656 O HOH B 681 2.12 REMARK 500 O HOH A 720 O HOH A 742 2.12 REMARK 500 O HOH A 627 O HOH A 771 2.13 REMARK 500 O HOH A 604 O HOH A 674 2.13 REMARK 500 O HOH B 623 O HOH B 673 2.13 REMARK 500 O HOH B 606 O HOH B 647 2.15 REMARK 500 O HOH B 672 O HOH B 680 2.16 REMARK 500 OE1 GLU A 296 O HOH A 607 2.16 REMARK 500 NH1 ARG A 330 O HOH A 604 2.18 REMARK 500 O HOH A 667 O HOH A 736 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 734 O HOH A 750 2555 1.88 REMARK 500 O HOH A 703 O HOH A 782 2555 1.90 REMARK 500 O HOH A 708 O HOH A 765 2545 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 142 -61.28 -108.46 REMARK 500 SER A 143 141.62 66.42 REMARK 500 SER A 168 -102.90 -96.42 REMARK 500 ASN A 280 -152.05 -138.45 REMARK 500 ARG A 330 56.32 -99.21 REMARK 500 PHE A 332 145.45 66.08 REMARK 500 TYR A 333 -41.49 -144.98 REMARK 500 LYS A 334 79.14 -151.26 REMARK 500 ASP A 376 48.86 -68.03 REMARK 500 ASP A 409 79.23 -153.96 REMARK 500 SER A 433 -157.28 -147.90 REMARK 500 ASP A 452 -107.82 51.07 REMARK 500 ALA B 142 -75.19 -117.70 REMARK 500 SER B 143 141.30 65.50 REMARK 500 MET B 146 42.16 -97.09 REMARK 500 SER B 167 -24.77 69.25 REMARK 500 SER B 168 -102.81 -94.91 REMARK 500 THR B 258 -77.58 -64.93 REMARK 500 GLU B 264 -15.35 71.00 REMARK 500 VAL B 265 148.01 58.54 REMARK 500 ASN B 280 -154.51 -119.93 REMARK 500 ILE B 298 114.77 -164.75 REMARK 500 LEU B 305 -120.64 -76.18 REMARK 500 GLN B 306 -142.25 -162.81 REMARK 500 ASN B 308 -159.87 -134.54 REMARK 500 ALA B 309 -150.76 -135.33 REMARK 500 LEU B 310 -37.30 -147.77 REMARK 500 TYR B 311 149.74 63.82 REMARK 500 LYS B 342 127.68 64.43 REMARK 500 ARG B 442 -60.18 -130.35 REMARK 500 ASP B 452 -108.66 52.26 REMARK 500 ARG B 465 0.53 -66.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 792 DISTANCE = 6.39 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A8L A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A8L B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6IIK RELATED DB: PDB REMARK 900 RELATED ID: 6IIL RELATED DB: PDB DBREF 6IIM A 96 494 UNP P54578 UBP14_HUMAN 96 494 DBREF 6IIM B 96 494 UNP P54578 UBP14_HUMAN 96 494 SEQRES 1 A 399 GLN LEU ALA SER ALA MET GLU LEU PRO CYS GLY LEU THR SEQRES 2 A 399 ASN LEU GLY ASN THR CYS TYR MET ASN ALA THR VAL GLN SEQRES 3 A 399 CYS ILE ARG SER VAL PRO GLU LEU LYS ASP ALA LEU LYS SEQRES 4 A 399 ARG TYR ALA GLY ALA LEU ARG ALA SER GLY GLU MET ALA SEQRES 5 A 399 SER ALA GLN TYR ILE THR ALA ALA LEU ARG ASP LEU PHE SEQRES 6 A 399 ASP SER MET ASP LYS THR SER SER SER ILE PRO PRO ILE SEQRES 7 A 399 ILE LEU LEU GLN PHE LEU HIS MET ALA PHE PRO GLN PHE SEQRES 8 A 399 ALA GLU LYS GLY GLU GLN GLY GLN TYR LEU GLN GLN ASP SEQRES 9 A 399 ALA ASN GLU CYS TRP ILE GLN MET MET ARG VAL LEU GLN SEQRES 10 A 399 GLN LYS LEU GLU ALA ILE GLU ASP ASP SER VAL LYS GLU SEQRES 11 A 399 THR ASP SER SER SER ALA SER ALA ALA THR PRO SER LYS SEQRES 12 A 399 LYS LYS SER LEU ILE ASP GLN PHE PHE GLY VAL GLU PHE SEQRES 13 A 399 GLU THR THR MET LYS CYS THR GLU SER GLU GLU GLU GLU SEQRES 14 A 399 VAL THR LYS GLY LYS GLU ASN GLN LEU GLN LEU SER CYS SEQRES 15 A 399 PHE ILE ASN GLN GLU VAL LYS TYR LEU PHE THR GLY LEU SEQRES 16 A 399 LYS LEU ARG LEU GLN GLU GLU ILE THR LYS GLN SER PRO SEQRES 17 A 399 THR LEU GLN ARG ASN ALA LEU TYR ILE LYS SER SER LYS SEQRES 18 A 399 ILE SER ARG LEU PRO ALA TYR LEU THR ILE GLN MET VAL SEQRES 19 A 399 ARG PHE PHE TYR LYS GLU LYS GLU SER VAL ASN ALA LYS SEQRES 20 A 399 VAL LEU LYS ASP VAL LYS PHE PRO LEU MET LEU ASP MET SEQRES 21 A 399 TYR GLU LEU CYS THR PRO GLU LEU GLN GLU LYS MET VAL SEQRES 22 A 399 SER PHE ARG SER LYS PHE LYS ASP LEU GLU ASP LYS LYS SEQRES 23 A 399 VAL ASN GLN GLN PRO ASN THR SER ASP LYS LYS SER SER SEQRES 24 A 399 PRO GLN LYS GLU VAL LYS TYR GLU PRO PHE SER PHE ALA SEQRES 25 A 399 ASP ASP ILE GLY SER ASN ASN CYS GLY TYR TYR ASP LEU SEQRES 26 A 399 GLN ALA VAL LEU THR HIS GLN GLY ARG SER SER SER SER SEQRES 27 A 399 GLY HIS TYR VAL SER TRP VAL LYS ARG LYS GLN ASP GLU SEQRES 28 A 399 TRP ILE LYS PHE ASP ASP ASP LYS VAL SER ILE VAL THR SEQRES 29 A 399 PRO GLU ASP ILE LEU ARG LEU SER GLY GLY GLY ASP TRP SEQRES 30 A 399 HIS ILE ALA TYR VAL LEU LEU TYR GLY PRO ARG ARG VAL SEQRES 31 A 399 GLU ILE MET GLU GLU GLU SER GLU GLN SEQRES 1 B 399 GLN LEU ALA SER ALA MET GLU LEU PRO CYS GLY LEU THR SEQRES 2 B 399 ASN LEU GLY ASN THR CYS TYR MET ASN ALA THR VAL GLN SEQRES 3 B 399 CYS ILE ARG SER VAL PRO GLU LEU LYS ASP ALA LEU LYS SEQRES 4 B 399 ARG TYR ALA GLY ALA LEU ARG ALA SER GLY GLU MET ALA SEQRES 5 B 399 SER ALA GLN TYR ILE THR ALA ALA LEU ARG ASP LEU PHE SEQRES 6 B 399 ASP SER MET ASP LYS THR SER SER SER ILE PRO PRO ILE SEQRES 7 B 399 ILE LEU LEU GLN PHE LEU HIS MET ALA PHE PRO GLN PHE SEQRES 8 B 399 ALA GLU LYS GLY GLU GLN GLY GLN TYR LEU GLN GLN ASP SEQRES 9 B 399 ALA ASN GLU CYS TRP ILE GLN MET MET ARG VAL LEU GLN SEQRES 10 B 399 GLN LYS LEU GLU ALA ILE GLU ASP ASP SER VAL LYS GLU SEQRES 11 B 399 THR ASP SER SER SER ALA SER ALA ALA THR PRO SER LYS SEQRES 12 B 399 LYS LYS SER LEU ILE ASP GLN PHE PHE GLY VAL GLU PHE SEQRES 13 B 399 GLU THR THR MET LYS CYS THR GLU SER GLU GLU GLU GLU SEQRES 14 B 399 VAL THR LYS GLY LYS GLU ASN GLN LEU GLN LEU SER CYS SEQRES 15 B 399 PHE ILE ASN GLN GLU VAL LYS TYR LEU PHE THR GLY LEU SEQRES 16 B 399 LYS LEU ARG LEU GLN GLU GLU ILE THR LYS GLN SER PRO SEQRES 17 B 399 THR LEU GLN ARG ASN ALA LEU TYR ILE LYS SER SER LYS SEQRES 18 B 399 ILE SER ARG LEU PRO ALA TYR LEU THR ILE GLN MET VAL SEQRES 19 B 399 ARG PHE PHE TYR LYS GLU LYS GLU SER VAL ASN ALA LYS SEQRES 20 B 399 VAL LEU LYS ASP VAL LYS PHE PRO LEU MET LEU ASP MET SEQRES 21 B 399 TYR GLU LEU CYS THR PRO GLU LEU GLN GLU LYS MET VAL SEQRES 22 B 399 SER PHE ARG SER LYS PHE LYS ASP LEU GLU ASP LYS LYS SEQRES 23 B 399 VAL ASN GLN GLN PRO ASN THR SER ASP LYS LYS SER SER SEQRES 24 B 399 PRO GLN LYS GLU VAL LYS TYR GLU PRO PHE SER PHE ALA SEQRES 25 B 399 ASP ASP ILE GLY SER ASN ASN CYS GLY TYR TYR ASP LEU SEQRES 26 B 399 GLN ALA VAL LEU THR HIS GLN GLY ARG SER SER SER SER SEQRES 27 B 399 GLY HIS TYR VAL SER TRP VAL LYS ARG LYS GLN ASP GLU SEQRES 28 B 399 TRP ILE LYS PHE ASP ASP ASP LYS VAL SER ILE VAL THR SEQRES 29 B 399 PRO GLU ASP ILE LEU ARG LEU SER GLY GLY GLY ASP TRP SEQRES 30 B 399 HIS ILE ALA TYR VAL LEU LEU TYR GLY PRO ARG ARG VAL SEQRES 31 B 399 GLU ILE MET GLU GLU GLU SER GLU GLN HET A8L A 501 24 HET A8L B 501 24 HETNAM A8L 1-[1-(4-CHLOROPHENYL)-2,5-DIMETHYL-1H-PYRROL-3-YL]-2- HETNAM 2 A8L (4-HYDROXYPIPERIDIN-1-YL)ETHAN-1-ONE FORMUL 3 A8L 2(C19 H23 CL N2 O2) FORMUL 5 HOH *274(H2 O) HELIX 1 AA1 THR A 113 SER A 125 1 13 HELIX 2 AA2 VAL A 126 TYR A 136 1 11 HELIX 3 AA3 MET A 146 THR A 166 1 21 HELIX 4 AA4 PRO A 172 PHE A 183 1 12 HELIX 5 AA5 PRO A 184 GLU A 188 5 5 HELIX 6 AA6 ASP A 199 LEU A 215 1 17 HELIX 7 AA7 SER A 241 GLY A 248 1 8 HELIX 8 AA8 TYR A 285 LEU A 294 1 10 HELIX 9 AA9 TYR A 356 CYS A 359 5 4 HELIX 10 AB1 THR A 360 ASP A 376 1 17 HELIX 11 AB2 THR A 459 ARG A 465 1 7 HELIX 12 AB3 LEU A 466 GLY A 468 5 3 HELIX 13 AB4 THR B 113 SER B 125 1 13 HELIX 14 AB5 VAL B 126 TYR B 136 1 11 HELIX 15 AB6 MET B 146 SER B 167 1 22 HELIX 16 AB7 PRO B 172 PHE B 183 1 12 HELIX 17 AB8 PRO B 184 GLU B 188 5 5 HELIX 18 AB9 ASP B 199 LEU B 215 1 17 HELIX 19 AC1 SER B 241 GLY B 248 1 8 HELIX 20 AC2 TYR B 285 LEU B 294 1 10 HELIX 21 AC3 TYR B 356 CYS B 359 5 4 HELIX 22 AC4 THR B 360 LYS B 373 1 14 HELIX 23 AC5 THR B 459 ARG B 465 1 7 HELIX 24 AC6 LEU B 466 GLY B 468 5 3 SHEET 1 AA1 2 GLY A 106 LEU A 107 0 SHEET 2 AA1 2 SER A 169 ILE A 170 1 O ILE A 170 N GLY A 106 SHEET 1 AA2 4 THR A 266 GLN A 272 0 SHEET 2 AA2 4 VAL A 249 CYS A 257 -1 N VAL A 249 O GLN A 272 SHEET 3 AA2 4 ARG A 307 ARG A 319 -1 O SER A 318 N GLU A 250 SHEET 4 AA2 4 GLN A 295 SER A 302 -1 N SER A 302 O ARG A 307 SHEET 1 AA3 5 LEU A 275 PHE A 278 0 SHEET 2 AA3 5 LEU A 324 VAL A 329 1 O THR A 325 N LEU A 275 SHEET 3 AA3 5 ILE A 474 PRO A 482 -1 O TYR A 476 N MET A 328 SHEET 4 AA3 5 TYR A 417 GLN A 427 -1 N LEU A 424 O VAL A 477 SHEET 5 AA3 5 MET A 352 ASP A 354 -1 N LEU A 353 O TYR A 418 SHEET 1 AA4 7 LEU A 275 PHE A 278 0 SHEET 2 AA4 7 LEU A 324 VAL A 329 1 O THR A 325 N LEU A 275 SHEET 3 AA4 7 ILE A 474 PRO A 482 -1 O TYR A 476 N MET A 328 SHEET 4 AA4 7 TYR A 417 GLN A 427 -1 N LEU A 424 O VAL A 477 SHEET 5 AA4 7 HIS A 435 LYS A 443 -1 O VAL A 437 N THR A 425 SHEET 6 AA4 7 GLU A 446 ASP A 451 -1 O PHE A 450 N SER A 438 SHEET 7 AA4 7 LYS A 454 VAL A 458 -1 O LYS A 454 N ASP A 451 SHEET 1 AA5 2 GLY B 106 LEU B 107 0 SHEET 2 AA5 2 SER B 169 ILE B 170 1 O ILE B 170 N GLY B 106 SHEET 1 AA6 4 THR B 266 GLN B 272 0 SHEET 2 AA6 4 VAL B 249 LYS B 256 -1 N THR B 253 O GLY B 268 SHEET 3 AA6 4 ILE B 312 ARG B 319 -1 O SER B 318 N GLU B 250 SHEET 4 AA6 4 GLN B 295 GLU B 297 -1 N GLU B 296 O LYS B 313 SHEET 1 AA7 5 LEU B 275 PHE B 278 0 SHEET 2 AA7 5 LEU B 324 VAL B 329 1 O GLN B 327 N CYS B 277 SHEET 3 AA7 5 ILE B 474 PRO B 482 -1 O TYR B 480 N LEU B 324 SHEET 4 AA7 5 TYR B 417 GLN B 427 -1 N ASP B 419 O GLY B 481 SHEET 5 AA7 5 MET B 352 ASP B 354 -1 N LEU B 353 O TYR B 418 SHEET 1 AA8 7 LEU B 275 PHE B 278 0 SHEET 2 AA8 7 LEU B 324 VAL B 329 1 O GLN B 327 N CYS B 277 SHEET 3 AA8 7 ILE B 474 PRO B 482 -1 O TYR B 480 N LEU B 324 SHEET 4 AA8 7 TYR B 417 GLN B 427 -1 N ASP B 419 O GLY B 481 SHEET 5 AA8 7 HIS B 435 LYS B 443 -1 O VAL B 437 N THR B 425 SHEET 6 AA8 7 GLU B 446 ASP B 451 -1 O PHE B 450 N SER B 438 SHEET 7 AA8 7 LYS B 454 VAL B 458 -1 O SER B 456 N LYS B 449 CISPEP 1 LYS A 334 GLU A 335 0 -3.38 CISPEP 2 ARG B 307 ASN B 308 0 1.53 CISPEP 3 ILE B 410 GLY B 411 0 -0.18 SITE 1 AC1 11 GLN A 197 GLN A 198 ASP A 199 PHE A 331 SITE 2 AC1 11 LYS A 342 HIS A 426 SER A 431 SER A 432 SITE 3 AC1 11 SER A 433 TYR A 436 TYR A 476 SITE 1 AC2 11 LEU B 196 GLN B 197 GLN B 198 ASP B 199 SITE 2 AC2 11 PHE B 331 LYS B 342 SER B 431 SER B 432 SITE 3 AC2 11 SER B 433 TYR B 436 TYR B 476 CRYST1 58.310 81.186 108.511 90.00 94.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017150 0.000000 0.001422 0.00000 SCALE2 0.000000 0.012317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009247 0.00000